Wall clock time and date at job start Tue Mar 31 2020 05:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99733 * 2 1 4 4 H 1.48500 * 109.47212 * 269.99940 * 3 2 1 5 5 H 1.48503 * 109.47164 * 30.00163 * 3 2 1 6 6 H 1.48496 * 109.47047 * 149.99627 * 3 2 1 7 7 C 1.37875 * 120.00079 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99661 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00157 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47130 * 185.04591 * 9 7 2 11 11 C 1.46902 * 110.99814 * 195.55222 * 10 9 7 12 12 C 1.50698 * 109.47069 * 166.07540 * 11 10 9 13 13 N 1.30981 * 126.43937 * 98.58556 * 12 11 10 14 14 C 1.35222 * 105.58257 * 179.97438 * 13 12 11 15 15 C 1.48394 * 126.41597 * 179.97438 * 14 13 12 16 16 C 1.39350 * 120.10708 * 359.72924 * 15 14 13 17 17 C 1.37985 * 119.88720 * 179.78364 * 16 15 14 18 18 C 1.38448 * 120.11315 * 0.49068 * 17 16 15 19 19 Cl 1.73595 * 119.89413 * 179.76391 * 18 17 16 20 20 C 1.38444 * 120.20933 * 359.74124 * 18 17 16 21 21 C 1.37979 * 120.11308 * 0.02562 * 20 18 17 22 22 N 1.30773 * 107.16912 * 0.02562 * 14 13 12 23 23 O 1.21292 * 110.09487 * 359.97438 * 22 14 13 24 24 C 1.46896 * 111.00243 * 71.59420 * 10 9 7 25 25 C 1.53173 * 109.54579 * 209.81201 * 24 10 9 26 26 C 1.53093 * 109.16417 * 183.15260 * 25 24 10 27 27 O 1.42911 * 109.41191 * 57.60701 * 26 25 24 28 28 C 1.42892 * 114.09862 * 298.84161 * 27 26 25 29 29 C 1.53090 * 109.41646 * 61.15984 * 28 27 26 30 30 H 0.97001 * 120.00117 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.46749 * 65.04960 * 9 7 2 32 32 H 1.08999 * 109.47173 * 305.05180 * 9 7 2 33 33 H 1.08996 * 109.47381 * 46.07287 * 11 10 9 34 34 H 1.09001 * 109.47115 * 286.07048 * 11 10 9 35 35 H 1.07998 * 120.05118 * 0.02562 * 16 15 14 36 36 H 1.08006 * 119.93900 * 180.23004 * 17 16 15 37 37 H 1.08004 * 119.94634 * 179.97438 * 20 18 17 38 38 H 1.08001 * 120.06295 * 180.02562 * 21 20 18 39 39 H 1.08999 * 109.54168 * 330.08411 * 24 10 9 40 40 H 1.08998 * 109.52535 * 303.05490 * 25 24 10 41 41 H 1.09000 * 109.52410 * 63.24688 * 25 24 10 42 42 H 1.09001 * 109.47954 * 297.62944 * 26 25 24 43 43 H 1.08995 * 109.48373 * 177.58750 * 26 25 24 44 44 H 1.08994 * 109.48420 * 301.17348 * 28 27 26 45 45 H 1.09005 * 109.49152 * 181.14934 * 28 27 26 46 46 H 1.09004 * 109.52368 * 182.47972 * 29 28 27 47 47 H 1.09003 * 109.52003 * 62.29502 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2011 -3.6130 0.1207 11 6 1.5667 -4.8877 -0.2408 12 6 2.6282 -5.9391 -0.4377 13 7 3.0006 -6.8417 0.4353 14 6 3.9705 -7.5593 -0.1753 15 6 4.7164 -8.7040 0.4037 16 6 4.4441 -9.1308 1.7020 17 6 5.1372 -10.1986 2.2344 18 6 6.1089 -10.8393 1.4846 19 17 6.9817 -12.1781 2.1621 20 6 6.3863 -10.4158 0.1960 21 6 5.6953 -9.3521 -0.3470 22 7 4.1289 -7.0547 -1.3714 23 8 3.3665 -6.1259 -1.5362 24 6 2.7716 -3.6736 1.4729 25 6 4.1855 -4.2591 1.4069 26 6 4.7414 -4.3916 2.8271 27 8 3.8676 -5.2129 3.6046 28 6 2.5443 -4.6914 3.7406 29 6 1.9001 -4.5709 2.3570 30 1 -0.4850 0.8400 -0.0004 31 1 0.6937 -2.5968 -0.9321 32 1 0.5587 -2.5189 0.8410 33 1 1.0024 -4.7635 -1.1649 34 1 0.8925 -5.1973 0.5578 35 1 3.6891 -8.6291 2.2891 36 1 4.9243 -10.5324 3.2392 37 1 7.1454 -10.9185 -0.3850 38 1 5.9121 -9.0227 -1.3525 39 1 2.8104 -2.6705 1.8976 40 1 4.1513 -5.2416 0.9361 41 1 4.8270 -3.5974 0.8249 42 1 4.8133 -3.4041 3.2830 43 1 5.7307 -4.8476 2.7892 44 1 2.5874 -3.7079 4.2083 45 1 1.9506 -5.3630 4.3607 46 1 0.9070 -4.1322 2.4546 47 1 1.8197 -5.5597 1.9053 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071912092.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:53 Heat of formation + Delta-G solvation = 47.209021 kcal Electronic energy + Delta-G solvation = -32956.712604 eV Core-core repulsion = 28554.736126 eV Total energy + Delta-G solvation = -4401.976479 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.129 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -46.63361 -40.85975 -40.38135 -38.28408 -37.64806 -36.73904 -34.97306 -34.03175 -32.80275 -32.23592 -31.99406 -31.51191 -29.72798 -27.35620 -25.82890 -25.50439 -24.62889 -24.34284 -23.41344 -22.88772 -21.98971 -20.76716 -19.17137 -18.95602 -18.38230 -17.91991 -17.40805 -17.03251 -16.91409 -16.82164 -16.40542 -16.05669 -15.76679 -15.64536 -15.35702 -15.08672 -14.90056 -14.72946 -14.60505 -14.30366 -14.19130 -13.84126 -13.43559 -13.37954 -13.14982 -13.00412 -12.95234 -12.70828 -12.70036 -12.67079 -12.52688 -12.26588 -12.10702 -12.00056 -11.89671 -11.83298 -11.79145 -11.42637 -11.23940 -10.88120 -10.60035 -10.44504 -10.17797 -9.64677 -9.13512 -8.18248 -6.25987 -0.54321 0.19139 0.20766 1.02458 1.28890 1.42224 1.43863 1.53210 1.74516 2.34364 2.42387 2.58284 2.83284 2.95952 3.15349 3.20320 3.69781 3.81213 3.82477 3.85373 3.90741 4.08520 4.13375 4.17490 4.23703 4.27392 4.32769 4.40439 4.52838 4.53338 4.57577 4.63471 4.74392 4.74760 4.79717 4.88970 4.95498 5.01064 5.07139 5.09786 5.11577 5.16946 5.31006 5.32740 5.38953 5.58104 5.68619 6.04088 6.20976 6.27156 6.47591 6.87816 7.04421 7.42664 8.91316 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.002264 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.162139 B =12366.349581 C =13059.795739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.212 3.788 10 N -0.533 5.533 11 C 0.126 3.874 12 C 0.221 3.779 13 N -0.469 5.469 14 C 0.207 3.793 15 C -0.033 4.033 16 C -0.060 4.060 17 C -0.109 4.109 18 C -0.022 4.022 19 Cl -0.058 7.058 20 C -0.109 4.109 21 C -0.076 4.076 22 N -0.393 5.393 23 O 0.075 5.925 24 C 0.092 3.908 25 C -0.147 4.147 26 C 0.070 3.930 27 O -0.386 6.386 28 C 0.071 3.929 29 C -0.186 4.186 30 H 0.264 0.736 31 H 0.018 0.982 32 H -0.014 1.014 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.141 0.859 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.100 0.900 44 H 0.047 0.953 45 H 0.111 0.889 46 H 0.066 0.934 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.301 -21.088 5.257 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.087 3.913 10 N -0.258 5.258 11 C -0.004 4.004 12 C 0.001 3.999 13 N -0.203 5.203 14 C -0.063 4.063 15 C -0.035 4.035 16 C -0.081 4.081 17 C -0.127 4.127 18 C -0.049 4.049 19 Cl -0.029 7.029 20 C -0.127 4.127 21 C -0.096 4.096 22 N -0.103 5.103 23 O 0.018 5.982 24 C -0.016 4.016 25 C -0.186 4.186 26 C -0.007 4.007 27 O -0.304 6.304 28 C -0.006 4.006 29 C -0.225 4.225 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.004 0.996 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.162 0.838 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.159 0.841 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.118 0.882 44 H 0.065 0.935 45 H 0.129 0.871 46 H 0.085 0.915 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.206 -21.649 4.828 24.416 hybrid contribution -0.673 1.579 0.037 1.716 sum 9.533 -20.070 4.865 22.746 Atomic orbital electron populations 1.70034 1.07229 1.27756 1.51693 1.25693 0.95620 1.02420 0.95097 0.85565 0.78609 0.79287 0.78256 1.20209 1.20917 1.19403 1.21338 0.93384 0.90975 1.49868 0.92602 1.19446 0.89499 0.87170 0.95196 1.62118 1.36018 1.01548 1.26107 1.20865 0.88946 0.85729 1.04823 1.28779 0.94364 0.95816 0.80987 1.72026 1.13031 1.07060 1.28202 1.24158 0.95638 0.98510 0.87965 1.17593 0.97549 0.92971 0.95363 1.21243 0.98666 0.95104 0.93046 1.21213 0.94931 0.95173 1.01397 1.21251 0.96424 0.92462 0.94773 1.98390 1.75077 1.44451 1.84950 1.21160 1.00834 0.96765 0.93944 1.21213 0.93618 0.94535 1.00247 1.74861 1.13081 1.02526 1.19783 1.85292 1.36744 1.37463 1.38674 1.21606 0.93822 0.98554 0.87653 1.22387 0.96509 1.01307 0.98354 1.22501 0.93590 0.95165 0.89465 1.87863 1.21876 1.48862 1.71849 1.22517 0.83219 0.99449 0.95413 1.22920 0.99621 1.01966 0.97998 0.92718 0.96367 0.99570 0.86330 0.88033 0.83761 0.82208 0.82069 0.84135 0.91599 0.91566 0.92457 0.93013 0.88241 0.93492 0.87067 0.91505 0.88680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.09 13.29 21.45 0.28 -51.80 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.52 -27.19 8.30 25.60 0.21 -26.97 16 8 H 0.06 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.21 9.95 4.66 85.56 0.40 10.34 16 10 N -0.53 -20.45 4.33 -879.40 -3.81 -24.27 16 11 C 0.13 3.91 5.10 85.56 0.44 4.34 16 12 C 0.22 6.75 5.68 88.35 0.50 7.25 16 13 N -0.47 -13.75 8.27 -302.49 -2.50 -16.25 16 14 C 0.21 5.93 7.41 137.28 1.02 6.95 16 15 C -0.03 -0.77 5.88 -20.04 -0.12 -0.89 16 16 C -0.06 -1.24 9.70 22.48 0.22 -1.02 16 17 C -0.11 -1.78 9.81 22.26 0.22 -1.56 16 18 C -0.02 -0.35 6.32 22.37 0.14 -0.20 16 19 Cl -0.06 -0.82 28.95 -2.72 -0.08 -0.90 16 20 C -0.11 -1.71 9.81 22.26 0.22 -1.49 16 21 C -0.08 -1.50 9.69 22.48 0.22 -1.28 16 22 N -0.39 -12.17 11.86 -59.11 -0.70 -12.87 16 23 O 0.08 2.43 11.29 74.61 0.84 3.27 16 24 C 0.09 3.27 2.01 45.03 0.09 3.36 16 25 C -0.15 -4.81 5.43 30.68 0.17 -4.65 16 26 C 0.07 1.98 6.84 72.01 0.49 2.47 16 27 O -0.39 -11.05 10.77 -148.98 -1.60 -12.65 16 28 C 0.07 1.88 6.84 72.01 0.49 2.38 16 29 C -0.19 -5.57 4.19 30.68 0.13 -5.44 16 30 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 31 H 0.02 0.90 7.76 -2.39 -0.02 0.88 16 32 H -0.01 -0.68 7.69 -2.39 -0.02 -0.69 16 33 H 0.12 3.39 7.78 -2.39 -0.02 3.37 16 34 H 0.10 2.89 5.60 -2.39 -0.01 2.87 16 35 H 0.14 3.03 7.88 -2.91 -0.02 3.01 16 36 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.14 2.69 7.87 -2.91 -0.02 2.67 16 39 H 0.07 2.72 7.04 -2.39 -0.02 2.71 16 40 H 0.07 2.20 3.75 -2.39 -0.01 2.19 16 41 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 46 H 0.07 2.07 7.77 -2.38 -0.02 2.05 16 47 H 0.09 2.77 4.41 -2.39 -0.01 2.76 16 Total: -1.00 -59.83 393.24 0.77 -59.06 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 1.01 Total: 17.18 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: 5.30 Total: -5.40 kcal Atomic # 7 Polarization: -98.46 SS G_CDS: -6.73 Total: -105.19 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.76 Total: -9.38 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.08 Total: -0.90 kcal Total: -59.83 0.77 -59.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071912092.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.270 kcal (2) G-P(sol) polarization free energy of solvation -59.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds