Wall clock time and date at job start Tue Mar 31 2020 05:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47180 * 2 1 4 4 N 1.31127 * 126.55163 * 89.99932 * 3 2 1 5 5 C 1.34502 * 105.61417 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.28709 * 179.97438 * 5 4 3 7 7 H 1.09004 * 110.33145 * 347.25901 * 6 5 4 8 8 C 1.54911 * 110.36887 * 109.62719 * 6 5 4 9 9 C 1.55140 * 101.64811 * 155.90014 * 8 6 5 10 10 C 1.54316 * 103.02251 * 324.34746 * 9 8 6 11 11 N 1.47446 * 107.23165 * 22.28444 * 10 9 8 12 12 C 1.46897 * 110.99712 * 123.25909 * 11 10 9 13 13 C 1.50699 * 109.47346 * 69.16146 * 12 11 10 14 14 C 1.38114 * 120.02319 * 259.99655 * 13 12 11 15 15 C 1.38388 * 120.05164 * 179.97438 * 14 13 12 16 16 Cl 1.73602 * 119.94090 * 180.02562 * 15 14 13 17 17 C 1.38427 * 120.11454 * 0.04543 * 15 14 13 18 18 C 1.38067 * 120.05661 * 0.02562 * 17 15 14 19 19 C 1.38859 * 120.03128 * 79.72020 * 13 12 11 20 20 O 1.35764 * 120.05310 * 0.02562 * 19 13 12 21 21 C 1.34825 * 116.99473 * 174.12145 * 20 19 13 22 22 H 1.08004 * 120.00250 * 5.07784 * 21 20 19 23 23 C 1.38653 * 119.99466 * 185.06930 * 21 20 19 24 24 N 1.31557 * 120.00343 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99424 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47635 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47140 * 120.00586 * 25 23 21 28 28 H 1.48500 * 109.46789 * 239.99994 * 25 23 21 29 29 N 1.29945 * 107.42180 * 0.02562 * 5 4 3 30 30 O 1.21298 * 110.25318 * 359.70254 * 29 5 4 31 31 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46830 * 299.99569 * 1 2 3 33 33 H 1.08999 * 109.47769 * 59.99736 * 1 2 3 34 34 H 1.08996 * 109.47270 * 120.00267 * 2 1 3 35 35 H 1.08994 * 109.46988 * 240.00148 * 2 1 3 36 36 H 1.08990 * 110.99240 * 273.99130 * 8 6 5 37 37 H 1.09001 * 110.98806 * 37.81152 * 8 6 5 38 38 H 1.09000 * 110.70464 * 205.96790 * 9 8 6 39 39 H 1.08999 * 110.85634 * 82.80024 * 9 8 6 40 40 H 1.09005 * 109.89075 * 262.87792 * 10 9 8 41 41 H 1.08999 * 110.02940 * 141.76849 * 10 9 8 42 42 H 1.09005 * 109.46849 * 189.15846 * 12 11 10 43 43 H 1.09001 * 109.47228 * 309.15590 * 12 11 10 44 44 H 1.07995 * 119.97330 * 359.97438 * 14 13 12 45 45 H 1.08003 * 119.96918 * 179.97438 * 17 15 14 46 46 H 1.08004 * 120.02907 * 180.02562 * 18 17 15 47 47 H 0.97000 * 120.00090 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2926 2.1571 1.0534 5 6 2.7108 3.3416 0.5727 6 6 3.1325 4.5365 1.3885 7 1 2.8461 4.4030 2.4318 8 6 4.6611 4.7577 1.2705 9 6 4.7849 6.2697 1.5954 10 6 3.5086 6.8662 0.9657 11 7 2.5290 5.7710 0.8431 12 6 1.2805 6.1006 1.5434 13 6 0.5712 7.2100 0.8104 14 6 0.6679 8.5107 1.2647 15 6 0.0172 9.5300 0.5918 16 17 0.1412 11.1639 1.1649 17 6 -0.7327 9.2488 -0.5373 18 6 -0.8337 7.9500 -0.9946 19 6 -0.1754 6.9262 -0.3254 20 8 -0.2678 5.6491 -0.7768 21 6 -1.1045 5.4242 -1.8099 22 1 -1.6012 6.2527 -2.2928 23 6 -1.3271 4.1291 -2.2522 24 7 -0.7223 3.1198 -1.6637 25 14 -2.4858 3.8175 -3.6840 26 1 -3.0341 5.1101 -4.1675 27 1 -1.7442 3.1521 -4.7851 28 1 -3.5996 2.9426 -3.2379 29 7 2.6835 3.2668 -0.7243 30 8 2.3018 2.1697 -1.0736 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 5.2004 4.1558 2.0018 37 1 5.0094 4.5458 0.2596 38 1 5.6766 6.6917 1.1321 39 1 4.7968 6.4354 2.6727 40 1 3.7362 7.2722 -0.0199 41 1 3.1082 7.6518 1.6066 42 1 0.6395 5.2196 1.5773 43 1 1.5080 6.4237 2.5592 44 1 1.2517 8.7325 2.1457 45 1 -1.2399 10.0460 -1.0604 46 1 -1.4186 7.7311 -1.8758 47 1 -0.8784 2.2138 -1.9730 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076016948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:26 Heat of formation + Delta-G solvation = 65.476013 kcal Electronic energy + Delta-G solvation = -33675.311140 eV Core-core repulsion = 29274.126777 eV Total energy + Delta-G solvation = -4401.184362 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.129 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.71486 -39.59058 -38.52858 -36.75062 -35.53846 -35.18004 -33.99870 -32.81641 -32.25304 -30.56144 -29.86142 -28.68177 -28.64915 -25.45723 -25.10737 -24.38949 -23.29888 -21.86485 -21.72834 -21.36378 -20.26392 -19.45641 -18.05326 -17.16368 -16.99360 -16.86422 -15.94212 -15.46394 -15.32830 -14.92463 -14.69073 -14.51417 -14.10165 -13.88034 -13.64503 -13.44901 -13.27340 -13.03527 -12.76614 -12.59597 -12.45838 -12.29772 -12.00656 -11.82940 -11.73904 -11.73493 -11.39745 -11.35855 -11.15115 -11.11922 -10.93230 -10.87705 -10.85106 -10.61555 -10.50574 -10.45265 -10.34420 -10.29024 -10.25904 -9.38329 -9.02591 -8.82127 -8.28640 -7.92243 -7.18604 -6.48199 -4.02762 1.96585 2.04291 2.13521 2.84254 2.93939 3.08826 3.11798 3.15361 3.56448 3.92725 3.95763 4.32662 4.59370 4.67637 4.85915 4.96023 5.05241 5.10319 5.15817 5.30692 5.33440 5.36691 5.39120 5.53106 5.54086 5.61193 5.63849 5.82054 5.84642 5.87447 5.94385 6.00585 6.06200 6.12562 6.16253 6.20108 6.24743 6.39395 6.44624 6.46127 6.55092 6.67487 6.74687 6.90811 6.91220 7.16615 7.27823 7.33762 7.49607 7.60267 7.95081 8.96953 9.05059 9.65159 10.66489 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.007597 B = 0.004321 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.893525 B = 6478.118414 C = 9540.016096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.022 4.022 3 C 0.175 3.825 4 N -0.491 5.491 5 C 0.172 3.828 6 C 0.169 3.831 7 H 0.077 0.923 8 C -0.116 4.116 9 C -0.139 4.139 10 C 0.048 3.952 11 N -0.502 5.502 12 C 0.117 3.883 13 C -0.149 4.149 14 C -0.056 4.056 15 C -0.130 4.130 16 Cl -0.110 7.110 17 C -0.057 4.057 18 C -0.229 4.229 19 C 0.176 3.824 20 O -0.144 6.144 21 C -0.393 4.393 22 H 0.089 0.911 23 C 0.050 3.950 24 N -0.836 5.836 25 Si 0.934 3.066 26 H -0.269 1.269 27 H -0.276 1.276 28 H -0.277 1.277 29 N -0.328 5.328 30 O 0.099 5.901 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.134 0.866 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.528 -1.726 5.374 8.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.061 4.061 3 C -0.046 4.046 4 N -0.226 5.226 5 C -0.102 4.102 6 C 0.059 3.941 7 H 0.095 0.905 8 C -0.155 4.155 9 C -0.178 4.178 10 C -0.079 4.079 11 N -0.227 5.227 12 C -0.009 4.009 13 C -0.151 4.151 14 C -0.076 4.076 15 C -0.157 4.157 16 Cl -0.082 7.082 17 C -0.076 4.076 18 C -0.249 4.249 19 C 0.119 3.881 20 O -0.045 6.045 21 C -0.469 4.469 22 H 0.106 0.894 23 C -0.157 4.157 24 N -0.469 5.469 25 Si 0.759 3.241 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.203 1.203 29 N -0.028 5.028 30 O 0.034 5.966 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.151 0.849 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.800 -1.373 4.854 8.467 hybrid contribution -0.799 0.226 -0.039 0.832 sum 6.001 -1.147 4.814 7.779 Atomic orbital electron populations 1.21759 0.92466 1.01902 1.04524 1.19998 0.97510 0.84216 1.04382 1.28303 0.97104 0.97919 0.81266 1.71632 1.18568 1.02944 1.29422 1.25019 1.02079 0.94590 0.88493 1.20429 0.93628 0.85679 0.94322 0.90539 1.22707 0.93701 0.96328 1.02795 1.22797 0.99021 0.95240 1.00729 1.22796 0.90661 0.93465 1.01007 1.63199 1.03480 1.00979 1.54998 1.20802 0.90421 0.97243 0.92484 1.18578 1.05320 0.93293 0.97885 1.20351 0.98018 0.90517 0.98674 1.20175 1.10356 0.83905 1.01286 1.98271 1.97843 1.22798 1.89292 1.20604 0.96600 0.96317 0.94108 1.21082 1.07560 0.91932 1.04296 1.19104 0.91940 0.86015 0.91031 1.84043 1.55201 1.20428 1.44815 1.21351 1.22867 0.93871 1.08853 0.89355 1.25157 0.97648 0.94319 0.98562 1.70089 1.39070 0.98868 1.38882 0.85753 0.79293 0.78945 0.80092 1.19294 1.20134 1.20268 1.74558 1.15137 0.97915 1.15233 1.85312 1.58752 1.17114 1.35387 0.91793 0.91895 0.90607 0.88447 0.88998 0.90581 0.90289 0.90619 0.91402 0.90539 0.92319 0.89917 0.94855 0.86533 0.86658 0.84850 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.89 37.16 0.37 -1.61 16 2 C -0.02 -0.27 6.56 -27.88 -0.18 -0.46 16 3 C 0.17 3.10 7.77 -13.06 -0.10 3.00 16 4 N -0.49 -9.42 11.55 -9.87 -0.11 -9.53 16 5 C 0.17 3.44 7.12 -156.37 -1.11 2.32 16 6 C 0.17 2.91 2.95 -67.34 -0.20 2.71 16 7 H 0.08 1.25 7.81 -51.93 -0.41 0.85 16 8 C -0.12 -1.61 6.48 -24.59 -0.16 -1.77 16 9 C -0.14 -1.69 6.94 -24.91 -0.17 -1.86 16 10 C 0.05 0.74 6.39 -2.84 -0.02 0.72 16 11 N -0.50 -9.28 4.79 -226.18 -1.08 -10.36 16 12 C 0.12 2.24 4.36 -4.98 -0.02 2.22 16 13 C -0.15 -3.01 4.94 -104.44 -0.52 -3.53 16 14 C -0.06 -1.00 8.57 -39.57 -0.34 -1.34 16 15 C -0.13 -2.34 6.32 -39.46 -0.25 -2.59 16 16 Cl -0.11 -1.72 28.95 -51.86 -1.50 -3.22 16 17 C -0.06 -1.07 9.82 -39.57 -0.39 -1.46 16 18 C -0.23 -4.89 9.17 -39.40 -0.36 -5.25 16 19 C 0.18 4.10 6.62 -39.11 -0.26 3.84 16 20 O -0.14 -3.86 9.00 0.02 0.00 -3.86 16 21 C -0.39 -10.42 9.49 30.89 0.29 -10.13 16 22 H 0.09 2.22 5.20 -52.48 -0.27 1.95 16 23 C 0.05 1.27 5.49 -17.52 -0.10 1.18 16 24 N -0.84 -21.72 13.67 55.48 0.76 -20.96 16 25 Si 0.93 19.75 29.55 -169.99 -5.02 14.72 16 26 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 28 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 29 N -0.33 -7.19 12.16 30.90 0.38 -6.82 16 30 O 0.10 2.03 11.31 18.10 0.20 2.24 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.20 6.94 -51.93 -0.36 0.84 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.19 8.05 -51.93 -0.42 0.78 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.06 0.85 6.15 -51.93 -0.32 0.53 16 42 H 0.08 1.84 7.80 -51.93 -0.41 1.44 16 43 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 44 H 0.12 1.82 7.64 -52.49 -0.40 1.42 16 45 H 0.12 1.89 8.06 -52.48 -0.42 1.47 16 46 H 0.13 2.85 5.64 -52.48 -0.30 2.55 16 47 H 0.27 6.35 7.11 -40.82 -0.29 6.06 16 LS Contribution 404.57 15.07 6.10 6.10 Total: -1.00 -29.81 404.57 -9.98 -39.79 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.18 Total: 5.92 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -3.52 Total: -14.01 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.06 Total: -47.67 kcal Atomic # 8 Polarization: -1.83 SS G_CDS: 0.20 Total: -1.62 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 17 Polarization: -1.72 SS G_CDS: -1.50 Total: -3.22 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -29.81 -9.98 -39.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076016948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.264 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds