Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.47180 * 2 1 4 4 N 1.31127 * 126.55163 * 89.99932 * 3 2 1 5 5 C 1.34502 * 105.61417 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.28709 * 179.97438 * 5 4 3 7 7 H 1.09004 * 110.33145 * 347.25901 * 6 5 4 8 8 C 1.54911 * 110.36887 * 109.62719 * 6 5 4 9 9 C 1.55140 * 101.64811 * 155.90014 * 8 6 5 10 10 C 1.54316 * 103.02251 * 324.34746 * 9 8 6 11 11 N 1.47446 * 107.23165 * 22.28444 * 10 9 8 12 12 C 1.46897 * 110.99712 * 123.25909 * 11 10 9 13 13 C 1.50699 * 109.47346 * 69.16146 * 12 11 10 14 14 C 1.38114 * 120.02319 * 259.99655 * 13 12 11 15 15 C 1.38388 * 120.05164 * 179.97438 * 14 13 12 16 16 Cl 1.73602 * 119.94090 * 180.02562 * 15 14 13 17 17 C 1.38427 * 120.11454 * 0.04543 * 15 14 13 18 18 C 1.38067 * 120.05661 * 0.02562 * 17 15 14 19 19 C 1.38859 * 120.03128 * 79.72020 * 13 12 11 20 20 O 1.35764 * 120.05310 * 0.02562 * 19 13 12 21 21 C 1.34825 * 116.99473 * 174.12145 * 20 19 13 22 22 H 1.08004 * 120.00250 * 5.07784 * 21 20 19 23 23 C 1.38653 * 119.99466 * 185.06930 * 21 20 19 24 24 N 1.31557 * 120.00343 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 119.99424 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47635 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47140 * 120.00586 * 25 23 21 28 28 H 1.48500 * 109.46789 * 239.99994 * 25 23 21 29 29 N 1.29945 * 107.42180 * 0.02562 * 5 4 3 30 30 O 1.21298 * 110.25318 * 359.70254 * 29 5 4 31 31 H 1.08998 * 109.47072 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46830 * 299.99569 * 1 2 3 33 33 H 1.08999 * 109.47769 * 59.99736 * 1 2 3 34 34 H 1.08996 * 109.47270 * 120.00267 * 2 1 3 35 35 H 1.08994 * 109.46988 * 240.00148 * 2 1 3 36 36 H 1.08990 * 110.99240 * 273.99130 * 8 6 5 37 37 H 1.09001 * 110.98806 * 37.81152 * 8 6 5 38 38 H 1.09000 * 110.70464 * 205.96790 * 9 8 6 39 39 H 1.08999 * 110.85634 * 82.80024 * 9 8 6 40 40 H 1.09005 * 109.89075 * 262.87792 * 10 9 8 41 41 H 1.08999 * 110.02940 * 141.76849 * 10 9 8 42 42 H 1.09005 * 109.46849 * 189.15846 * 12 11 10 43 43 H 1.09001 * 109.47228 * 309.15590 * 12 11 10 44 44 H 1.07995 * 119.97330 * 359.97438 * 14 13 12 45 45 H 1.08003 * 119.96918 * 179.97438 * 17 15 14 46 46 H 1.08004 * 120.02907 * 180.02562 * 18 17 15 47 47 H 0.97000 * 120.00090 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2926 2.1571 1.0534 5 6 2.7108 3.3416 0.5727 6 6 3.1325 4.5365 1.3885 7 1 2.8461 4.4030 2.4318 8 6 4.6611 4.7577 1.2705 9 6 4.7849 6.2697 1.5954 10 6 3.5086 6.8662 0.9657 11 7 2.5290 5.7710 0.8431 12 6 1.2805 6.1006 1.5434 13 6 0.5712 7.2100 0.8104 14 6 0.6679 8.5107 1.2647 15 6 0.0172 9.5300 0.5918 16 17 0.1412 11.1639 1.1649 17 6 -0.7327 9.2488 -0.5373 18 6 -0.8337 7.9500 -0.9946 19 6 -0.1754 6.9262 -0.3254 20 8 -0.2678 5.6491 -0.7768 21 6 -1.1045 5.4242 -1.8099 22 1 -1.6012 6.2527 -2.2928 23 6 -1.3271 4.1291 -2.2522 24 7 -0.7223 3.1198 -1.6637 25 14 -2.4858 3.8175 -3.6840 26 1 -3.0341 5.1101 -4.1675 27 1 -1.7442 3.1521 -4.7851 28 1 -3.5996 2.9426 -3.2379 29 7 2.6835 3.2668 -0.7243 30 8 2.3018 2.1697 -1.0736 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 5.2004 4.1558 2.0018 37 1 5.0094 4.5458 0.2596 38 1 5.6766 6.6917 1.1321 39 1 4.7968 6.4354 2.6727 40 1 3.7362 7.2722 -0.0199 41 1 3.1082 7.6518 1.6066 42 1 0.6395 5.2196 1.5773 43 1 1.5080 6.4237 2.5592 44 1 1.2517 8.7325 2.1457 45 1 -1.2399 10.0460 -1.0604 46 1 -1.4186 7.7311 -1.8758 47 1 -0.8784 2.2138 -1.9730 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076016948.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = 46.688586 kcal Electronic energy + Delta-G solvation = -33676.125824 eV Core-core repulsion = 29274.126777 eV Total energy + Delta-G solvation = -4401.999046 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.129 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.20706 -41.14613 -39.93859 -38.37590 -37.00854 -36.58724 -35.27315 -34.30607 -34.00634 -31.86580 -31.30892 -30.26498 -29.98350 -27.30551 -26.56945 -25.64175 -24.74236 -23.39467 -23.17352 -22.67673 -21.62108 -20.79656 -19.83221 -18.68723 -18.63701 -18.34648 -17.26018 -16.92560 -16.85287 -16.43569 -16.22069 -15.90574 -15.54536 -15.38123 -15.09237 -14.81787 -14.76019 -14.47440 -14.11540 -13.92052 -13.73336 -13.67829 -13.58240 -13.44769 -13.17288 -12.95389 -12.83773 -12.75898 -12.61445 -12.43735 -12.39705 -12.16360 -12.08433 -12.03394 -11.91658 -11.81326 -11.80051 -11.74554 -11.60050 -11.13029 -10.65618 -10.50454 -9.84118 -9.25366 -8.85751 -8.33971 -5.98411 0.38874 0.53104 0.60541 1.35131 1.36610 1.41054 1.48714 1.49058 2.18974 2.27025 2.57533 2.79904 3.12763 3.28402 3.43367 3.50045 3.65841 3.73920 3.90154 3.93119 4.01741 4.13507 4.21404 4.25599 4.30290 4.35072 4.41293 4.53345 4.53754 4.59952 4.71550 4.77356 4.85838 4.87147 4.94288 4.95991 5.03406 5.04582 5.07896 5.10835 5.15979 5.28196 5.35342 5.36252 5.40036 5.47106 5.64219 5.95735 6.01200 6.09750 6.16485 7.07413 7.58140 7.84423 8.83025 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.007597 B = 0.004321 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3684.893525 B = 6478.118414 C = 9540.016096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C 0.179 3.821 4 N -0.511 5.511 5 C 0.168 3.832 6 C 0.164 3.836 7 H 0.083 0.917 8 C -0.108 4.108 9 C -0.123 4.123 10 C 0.046 3.954 11 N -0.530 5.530 12 C 0.129 3.871 13 C -0.150 4.150 14 C -0.049 4.049 15 C -0.117 4.117 16 Cl -0.077 7.077 17 C -0.057 4.057 18 C -0.241 4.241 19 C 0.143 3.857 20 O -0.186 6.186 21 C -0.424 4.424 22 H 0.088 0.912 23 C 0.000 4.000 24 N -0.866 5.866 25 Si 0.999 3.001 26 H -0.264 1.264 27 H -0.273 1.273 28 H -0.269 1.269 29 N -0.367 5.367 30 O 0.075 5.925 31 H 0.104 0.896 32 H 0.036 0.964 33 H 0.045 0.955 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.150 0.850 45 H 0.142 0.858 46 H 0.124 0.876 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.532 -0.395 6.956 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.059 4.059 3 C -0.041 4.041 4 N -0.245 5.245 5 C -0.106 4.106 6 C 0.054 3.946 7 H 0.101 0.899 8 C -0.147 4.147 9 C -0.161 4.161 10 C -0.080 4.080 11 N -0.255 5.255 12 C 0.002 3.998 13 C -0.153 4.153 14 C -0.068 4.068 15 C -0.144 4.144 16 Cl -0.048 7.048 17 C -0.075 4.075 18 C -0.261 4.261 19 C 0.089 3.911 20 O -0.089 6.089 21 C -0.500 4.500 22 H 0.106 0.894 23 C -0.202 4.202 24 N -0.500 5.500 25 Si 0.821 3.179 26 H -0.188 1.188 27 H -0.198 1.198 28 H -0.194 1.194 29 N -0.073 5.073 30 O 0.015 5.985 31 H 0.122 0.878 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.145 0.855 35 H 0.141 0.859 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.168 0.832 45 H 0.159 0.841 46 H 0.141 0.859 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.807 -0.016 6.448 10.125 hybrid contribution -1.100 0.056 -0.379 1.165 sum 6.707 0.040 6.070 9.045 Atomic orbital electron populations 1.21699 0.93017 1.03566 1.01707 1.20388 0.96719 0.81523 1.07319 1.29401 0.95183 0.99224 0.80289 1.71647 1.19690 1.03179 1.30020 1.25668 1.00935 0.95593 0.88402 1.20659 0.95766 0.84307 0.93841 0.89914 1.22686 0.91184 0.98287 1.02535 1.22764 0.97936 0.93177 1.02223 1.22822 0.91605 0.92961 1.00661 1.63010 1.04102 1.02470 1.55927 1.20606 0.90208 0.95041 0.93977 1.18884 1.04557 0.94808 0.97002 1.20645 0.97602 0.89255 0.99279 1.20383 1.08215 0.85610 1.00215 1.98292 1.97637 1.20101 1.88797 1.20844 0.96538 0.95714 0.94452 1.21141 1.07757 0.92937 1.04249 1.19696 0.93263 0.85690 0.92485 1.84028 1.56847 1.22150 1.45872 1.21632 1.24030 0.94479 1.09875 0.89423 1.26123 0.99154 0.93955 1.01003 1.70200 1.40401 0.99120 1.40312 0.84804 0.77382 0.78831 0.76915 1.18834 1.19828 1.19376 1.74518 1.17312 0.98955 1.16465 1.85240 1.59530 1.17272 1.36443 0.87774 0.94457 0.93602 0.85485 0.85950 0.88064 0.92191 0.88613 0.88734 0.92426 0.91023 0.94417 0.91718 0.83215 0.84058 0.85871 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.89 71.98 0.71 -3.11 16 2 C -0.02 -0.51 6.56 29.85 0.20 -0.31 16 3 C 0.18 6.60 7.77 88.38 0.69 7.29 16 4 N -0.51 -20.37 11.55 -303.20 -3.50 -23.88 16 5 C 0.17 7.03 7.12 138.46 0.99 8.02 16 6 C 0.16 5.70 2.95 44.64 0.13 5.83 16 7 H 0.08 2.70 7.81 -2.38 -0.02 2.68 16 8 C -0.11 -2.85 6.48 31.98 0.21 -2.65 16 9 C -0.12 -2.62 6.94 31.77 0.22 -2.40 16 10 C 0.05 1.35 6.39 86.65 0.55 1.91 16 11 N -0.53 -19.91 4.79 -869.51 -4.17 -24.08 16 12 C 0.13 5.01 4.36 85.56 0.37 5.38 16 13 C -0.15 -6.15 4.94 -19.75 -0.10 -6.24 16 14 C -0.05 -1.63 8.57 22.28 0.19 -1.44 16 15 C -0.12 -3.90 6.32 22.35 0.14 -3.76 16 16 Cl -0.08 -2.10 28.95 -2.72 -0.08 -2.18 16 17 C -0.06 -2.04 9.82 22.27 0.22 -1.83 16 18 C -0.24 -10.59 9.17 22.39 0.21 -10.39 16 19 C 0.14 6.94 6.62 22.58 0.15 7.09 16 20 O -0.19 -10.66 9.00 -22.85 -0.21 -10.86 16 21 C -0.42 -24.02 9.49 67.92 0.64 -23.37 16 22 H 0.09 4.73 5.20 -2.91 -0.02 4.72 16 23 C 0.00 0.02 5.49 84.83 0.47 0.48 16 24 N -0.87 -47.93 13.67 21.61 0.30 -47.63 16 25 Si 1.00 42.33 29.55 68.60 2.03 44.36 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 28 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 29 N -0.37 -17.15 12.16 -60.32 -0.73 -17.89 16 30 O 0.07 3.29 11.31 74.83 0.85 4.13 16 31 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.04 1.52 6.94 -2.39 -0.02 1.50 16 34 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.06 1.82 8.05 -2.39 -0.02 1.80 16 38 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 41 H 0.07 1.86 6.15 -2.39 -0.01 1.85 16 42 H 0.04 1.79 7.80 -2.38 -0.02 1.77 16 43 H 0.06 2.03 7.85 -2.39 -0.02 2.01 16 44 H 0.15 4.04 7.64 -2.91 -0.02 4.02 16 45 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 46 H 0.12 5.56 5.64 -2.91 -0.02 5.55 16 47 H 0.27 13.67 7.11 -92.71 -0.66 13.01 16 Total: -1.00 -71.87 404.57 1.59 -70.28 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 1.12 Total: 27.23 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 5.98 Total: -19.49 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -8.11 Total: -113.47 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.64 Total: -6.73 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -2.10 SS G_CDS: -0.08 Total: -2.18 kcal Total: -71.87 1.59 -70.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076016948.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.972 kcal (2) G-P(sol) polarization free energy of solvation -71.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds