Wall clock time and date at job start Tue Mar 31 2020 05:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00354 * 2 1 4 4 H 1.48501 * 109.47293 * 240.00337 * 3 2 1 5 5 H 1.48501 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47198 * 120.00466 * 3 2 1 7 7 C 1.37883 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99820 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00020 * 89.99760 * 10 9 7 12 12 O 1.21587 * 120.00203 * 186.54533 * 11 10 9 13 13 N 1.34782 * 119.99550 * 6.55267 * 11 10 9 14 14 C 1.39828 * 119.99503 * 183.58463 * 13 11 10 15 15 C 1.37804 * 120.19342 * 329.79892 * 14 13 11 16 16 C 1.39135 * 120.70087 * 179.81250 * 15 14 13 17 17 C 1.37561 * 120.95384 * 0.44835 * 16 15 14 18 18 O 1.35953 * 120.08845 * 179.80917 * 17 16 15 19 19 C 1.42899 * 117.00019 * 359.97438 * 18 17 16 20 20 F 1.39903 * 109.46924 * 299.99902 * 19 18 17 21 21 F 1.39899 * 109.47310 * 59.99700 * 19 18 17 22 22 C 1.40941 * 119.82748 * 359.79293 * 17 16 15 23 23 N 1.33689 * 120.96345 * 180.02562 * 22 17 16 24 24 C 1.31096 * 121.32531 * 179.97438 * 23 22 17 25 25 C 1.39287 * 121.72438 * 0.02562 * 24 23 22 26 26 C 1.36637 * 119.91464 * 359.97438 * 25 24 23 27 27 C 1.40602 * 118.18199 * 0.02562 * 26 25 24 28 28 C 1.46501 * 120.00094 * 270.00535 * 10 9 7 29 29 C 1.53000 * 117.49754 * 197.06694 * 28 10 9 30 30 C 1.52995 * 60.00075 * 252.50779 * 29 28 10 31 31 H 0.97006 * 119.99356 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47274 * 60.00310 * 9 7 2 33 33 H 1.09000 * 109.47488 * 300.00592 * 9 7 2 34 34 H 0.97000 * 119.99981 * 3.86255 * 13 11 10 35 35 H 1.07997 * 119.65050 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.52382 * 180.24247 * 16 15 14 37 37 H 1.08998 * 109.47669 * 180.02562 * 19 18 17 38 38 H 1.08004 * 119.13853 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.04295 * 180.02562 * 25 24 23 40 40 H 1.08002 * 120.90515 * 180.02562 * 26 25 24 41 41 H 1.08998 * 115.54937 * 342.76980 * 28 10 9 42 42 H 1.09008 * 117.49801 * 359.97438 * 29 28 10 43 43 H 1.08995 * 117.49971 * 145.01648 * 29 28 10 44 44 H 1.08995 * 117.50301 * 252.50760 * 30 29 28 45 45 H 1.09006 * 117.51971 * 107.48020 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6407 -4.1250 1.1667 12 8 3.5181 -4.9667 1.1702 13 7 2.1058 -3.7042 2.3301 14 6 2.6110 -4.1796 3.5442 15 6 3.1573 -5.4425 3.6206 16 6 3.6665 -5.9246 4.8223 17 6 3.6298 -5.1588 5.9644 18 8 4.1290 -5.6490 7.1301 19 6 4.6768 -6.9684 7.0973 20 9 3.6871 -7.8745 6.7016 21 9 5.7382 -7.0101 6.1868 22 6 3.0736 -3.8644 5.9229 23 7 3.0267 -3.1005 7.0190 24 6 2.5114 -1.8954 6.9883 25 6 1.9883 -1.3521 5.8173 26 6 2.0052 -2.0804 4.6613 27 6 2.5586 -3.3723 4.6985 28 6 2.6788 -4.1695 -1.2693 29 6 3.3356 -5.5509 -1.2324 30 6 4.1911 -4.3029 -1.4591 31 1 -0.4849 0.8402 0.0004 32 1 0.6239 -2.5567 -0.8903 33 1 0.6245 -2.5571 0.8896 34 1 1.3678 -3.0747 2.3250 35 1 3.1935 -6.0632 2.7376 36 1 4.0939 -6.9158 4.8597 37 1 5.0385 -7.2365 8.0899 38 1 2.4920 -1.3085 7.8948 39 1 1.5707 -0.3562 5.8228 40 1 1.6043 -1.6747 3.7442 41 1 2.0817 -3.9191 -2.1460 42 1 3.4139 -6.0453 -0.2640 43 1 3.1705 -6.2096 -2.0849 44 1 4.5889 -4.1406 -2.4608 45 1 4.8319 -3.9760 -0.6401 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076019218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:30 Heat of formation + Delta-G solvation = -60.924248 kcal Electronic energy + Delta-G solvation = -35136.834971 eV Core-core repulsion = 30178.372802 eV Total energy + Delta-G solvation = -4958.462169 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.47400 -47.45732 -41.18813 -40.05096 -38.70460 -37.33889 -35.62244 -34.80963 -33.66626 -32.55594 -31.91293 -30.57296 -28.60443 -27.22440 -26.07475 -24.18688 -23.83993 -23.31562 -22.74929 -21.84333 -21.26325 -19.86401 -19.18041 -18.79392 -18.02040 -17.53844 -17.41877 -16.81382 -16.61290 -16.40121 -16.03071 -15.19448 -15.08923 -14.75540 -14.64091 -14.60677 -14.49767 -14.22835 -14.12653 -13.81900 -13.43186 -13.35832 -13.33297 -13.16462 -12.92708 -12.68864 -12.56124 -12.39050 -12.09641 -11.81177 -11.63779 -11.29228 -11.18109 -10.96566 -10.85006 -10.67274 -10.35464 -10.25633 -9.79130 -9.73027 -9.60584 -9.46136 -9.12862 -8.76480 -8.69325 -7.73522 -7.22158 -6.32227 -4.40962 0.47799 0.83044 1.99110 2.44990 2.94411 3.02752 3.16037 3.21433 3.25713 3.32581 3.59549 4.12588 4.14784 4.16418 4.21355 4.32314 4.51194 4.56735 4.77344 4.86302 4.91654 4.98770 5.00325 5.11317 5.30213 5.38907 5.47098 5.52202 5.61917 5.69752 5.91405 6.09329 6.12417 6.14441 6.18911 6.35111 6.41349 6.55005 6.59564 6.63116 6.77192 6.87029 6.94826 7.15905 7.22274 7.57205 7.63354 7.87383 7.92109 8.34276 8.68913 9.01850 9.28385 10.73408 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.009158 B = 0.003356 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.740140 B = 8342.176252 C =10710.395473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.242 3.758 10 N -0.580 5.580 11 C 0.710 3.290 12 O -0.589 6.589 13 N -0.674 5.674 14 C 0.184 3.816 15 C -0.109 4.109 16 C -0.148 4.148 17 C 0.091 3.909 18 O -0.301 6.301 19 C 0.407 3.593 20 F -0.201 7.201 21 F -0.200 7.200 22 C 0.141 3.859 23 N -0.463 5.463 24 C 0.127 3.873 25 C -0.174 4.174 26 C -0.048 4.048 27 C -0.096 4.096 28 C 0.104 3.896 29 C -0.200 4.200 30 C -0.187 4.187 31 H 0.267 0.733 32 H 0.043 0.957 33 H 0.029 0.971 34 H 0.416 0.584 35 H 0.161 0.839 36 H 0.139 0.861 37 H 0.179 0.821 38 H 0.159 0.841 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.127 0.873 42 H 0.133 0.867 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 -9.294 11.625 15.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.122 3.878 10 N -0.311 5.311 11 C 0.413 3.587 12 O -0.470 6.470 13 N -0.322 5.322 14 C 0.085 3.915 15 C -0.130 4.130 16 C -0.169 4.169 17 C 0.046 3.954 18 O -0.218 6.218 19 C 0.317 3.683 20 F -0.183 7.183 21 F -0.181 7.181 22 C 0.019 3.981 23 N -0.171 5.171 24 C -0.046 4.046 25 C -0.194 4.194 26 C -0.074 4.074 27 C -0.100 4.100 28 C -0.002 4.002 29 C -0.238 4.238 30 C -0.226 4.226 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.256 0.744 35 H 0.178 0.822 36 H 0.156 0.844 37 H 0.196 0.804 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.165 0.835 41 H 0.144 0.856 42 H 0.150 0.850 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.446 -10.057 12.382 16.560 hybrid contribution -0.206 1.715 -1.177 2.090 sum 4.240 -8.342 11.205 14.599 Atomic orbital electron populations 1.69907 1.05949 1.27666 1.49339 1.24932 0.94858 0.99308 0.94542 0.86560 0.79584 0.82392 0.79042 1.20008 1.21044 1.20047 1.21466 0.93774 0.90199 1.52461 0.91919 1.19392 0.87278 0.82718 0.98382 1.46832 1.46924 1.35238 1.02075 1.15789 0.81175 0.81293 0.80403 1.90661 1.34078 1.36688 1.85615 1.42862 1.37562 1.48920 1.02830 1.17360 0.98007 0.91951 0.84182 1.21235 0.99306 0.94199 0.98272 1.21340 1.03132 1.00598 0.91789 1.18332 0.99764 0.92457 0.84858 1.86691 1.73634 1.29479 1.31997 1.23412 0.75273 0.77026 0.92600 1.93094 1.63762 1.68489 1.92917 1.93104 1.57625 1.95820 1.71592 1.17644 0.99276 0.92106 0.89102 1.68050 1.15162 1.05762 1.28080 1.22928 0.92515 0.91262 0.97877 1.21880 1.02176 1.01829 0.93531 1.21483 0.94444 0.91959 0.99549 1.18344 1.03060 0.95322 0.93256 1.21359 0.94184 0.97761 0.86851 1.23794 1.03929 0.91363 1.04721 1.23153 0.94871 1.02641 1.01926 0.92287 0.93914 0.95332 0.74370 0.82188 0.84371 0.80420 0.82342 0.84223 0.83522 0.85589 0.84960 0.90086 0.89513 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.93 13.29 55.43 0.74 -22.20 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 19.78 29.54 -169.99 -5.02 14.76 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.30 9.39 -34.44 -0.32 -13.62 16 8 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 9 C 0.24 5.34 5.15 -5.20 -0.03 5.31 16 10 N -0.58 -11.61 2.82 -173.17 -0.49 -12.10 16 11 C 0.71 14.12 7.92 -86.91 -0.69 13.43 16 12 O -0.59 -12.04 9.23 5.29 0.05 -11.99 16 13 N -0.67 -12.25 4.97 -13.99 -0.07 -12.32 16 14 C 0.18 3.20 6.40 -83.34 -0.53 2.67 16 15 C -0.11 -1.83 8.71 -39.41 -0.34 -2.17 16 16 C -0.15 -2.27 8.24 -39.50 -0.33 -2.60 16 17 C 0.09 1.43 6.53 -38.81 -0.25 1.17 16 18 O -0.30 -4.07 10.22 -19.59 -0.20 -4.27 16 19 C 0.41 3.93 5.98 101.05 0.60 4.53 16 20 F -0.20 -2.19 15.58 2.25 0.04 -2.16 16 21 F -0.20 -2.28 15.58 2.25 0.04 -2.25 16 22 C 0.14 2.33 6.61 -84.74 -0.56 1.77 16 23 N -0.46 -7.17 10.13 -10.90 -0.11 -7.28 16 24 C 0.13 1.60 11.15 -17.48 -0.19 1.40 16 25 C -0.17 -2.20 10.03 -39.77 -0.40 -2.60 16 26 C -0.05 -0.73 9.54 -39.27 -0.37 -1.10 16 27 C -0.10 -1.58 5.75 -106.68 -0.61 -2.20 16 28 C 0.10 1.87 6.62 -67.93 -0.45 1.42 16 29 C -0.20 -3.27 9.63 -26.73 -0.26 -3.53 16 30 C -0.19 -3.22 9.86 -26.73 -0.26 -3.48 16 31 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.04 0.99 8.03 -51.93 -0.42 0.57 16 33 H 0.03 0.63 6.09 -51.93 -0.32 0.32 16 34 H 0.42 7.40 5.09 -40.82 -0.21 7.19 16 35 H 0.16 2.81 5.83 -52.49 -0.31 2.50 16 36 H 0.14 1.93 5.01 -52.49 -0.26 1.66 16 37 H 0.18 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.14 1.39 8.06 -52.49 -0.42 0.96 16 40 H 0.15 2.24 6.86 -52.49 -0.36 1.88 16 41 H 0.13 2.09 8.09 -51.93 -0.42 1.67 16 42 H 0.13 2.41 5.28 -51.98 -0.27 2.14 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.09 1.85 7.52 -51.93 -0.39 1.46 16 LS Contribution 380.12 15.07 5.73 5.73 Total: -1.00 -29.51 380.12 -9.02 -38.53 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -4.61 Total: 13.54 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -5.10 Total: 1.99 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.07 Total: -53.89 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.15 Total: -16.26 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.07 Total: -4.40 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.51 -9.02 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076019218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.389 kcal (2) G-P(sol) polarization free energy of solvation -29.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds