Wall clock time and date at job start Tue Mar 31 2020 05:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00354 * 2 1 4 4 H 1.48501 * 109.47293 * 240.00337 * 3 2 1 5 5 H 1.48501 * 109.47247 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47198 * 120.00466 * 3 2 1 7 7 C 1.37883 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99820 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47252 * 180.02562 * 9 7 2 11 11 C 1.34783 * 120.00020 * 89.99760 * 10 9 7 12 12 O 1.21587 * 120.00203 * 186.54533 * 11 10 9 13 13 N 1.34782 * 119.99550 * 6.55267 * 11 10 9 14 14 C 1.39828 * 119.99503 * 183.58463 * 13 11 10 15 15 C 1.37804 * 120.19342 * 329.79892 * 14 13 11 16 16 C 1.39135 * 120.70087 * 179.81250 * 15 14 13 17 17 C 1.37561 * 120.95384 * 0.44835 * 16 15 14 18 18 O 1.35953 * 120.08845 * 179.80917 * 17 16 15 19 19 C 1.42899 * 117.00019 * 359.97438 * 18 17 16 20 20 F 1.39903 * 109.46924 * 299.99902 * 19 18 17 21 21 F 1.39899 * 109.47310 * 59.99700 * 19 18 17 22 22 C 1.40941 * 119.82748 * 359.79293 * 17 16 15 23 23 N 1.33689 * 120.96345 * 180.02562 * 22 17 16 24 24 C 1.31096 * 121.32531 * 179.97438 * 23 22 17 25 25 C 1.39287 * 121.72438 * 0.02562 * 24 23 22 26 26 C 1.36637 * 119.91464 * 359.97438 * 25 24 23 27 27 C 1.40602 * 118.18199 * 0.02562 * 26 25 24 28 28 C 1.46501 * 120.00094 * 270.00535 * 10 9 7 29 29 C 1.53000 * 117.49754 * 197.06694 * 28 10 9 30 30 C 1.52995 * 60.00075 * 252.50779 * 29 28 10 31 31 H 0.97006 * 119.99356 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.47274 * 60.00310 * 9 7 2 33 33 H 1.09000 * 109.47488 * 300.00592 * 9 7 2 34 34 H 0.97000 * 119.99981 * 3.86255 * 13 11 10 35 35 H 1.07997 * 119.65050 * 0.02562 * 15 14 13 36 36 H 1.08002 * 119.52382 * 180.24247 * 16 15 14 37 37 H 1.08998 * 109.47669 * 180.02562 * 19 18 17 38 38 H 1.08004 * 119.13853 * 180.02562 * 24 23 22 39 39 H 1.07995 * 120.04295 * 180.02562 * 25 24 23 40 40 H 1.08002 * 120.90515 * 180.02562 * 26 25 24 41 41 H 1.08998 * 115.54937 * 342.76980 * 28 10 9 42 42 H 1.09008 * 117.49801 * 359.97438 * 29 28 10 43 43 H 1.08995 * 117.49971 * 145.01648 * 29 28 10 44 44 H 1.08995 * 117.50301 * 252.50760 * 30 29 28 45 45 H 1.09006 * 117.51971 * 107.48020 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 2.6407 -4.1250 1.1667 12 8 3.5181 -4.9667 1.1702 13 7 2.1058 -3.7042 2.3301 14 6 2.6110 -4.1796 3.5442 15 6 3.1573 -5.4425 3.6206 16 6 3.6665 -5.9246 4.8223 17 6 3.6298 -5.1588 5.9644 18 8 4.1290 -5.6490 7.1301 19 6 4.6768 -6.9684 7.0973 20 9 3.6871 -7.8745 6.7016 21 9 5.7382 -7.0101 6.1868 22 6 3.0736 -3.8644 5.9229 23 7 3.0267 -3.1005 7.0190 24 6 2.5114 -1.8954 6.9883 25 6 1.9883 -1.3521 5.8173 26 6 2.0052 -2.0804 4.6613 27 6 2.5586 -3.3723 4.6985 28 6 2.6788 -4.1695 -1.2693 29 6 3.3356 -5.5509 -1.2324 30 6 4.1911 -4.3029 -1.4591 31 1 -0.4849 0.8402 0.0004 32 1 0.6239 -2.5567 -0.8903 33 1 0.6245 -2.5571 0.8896 34 1 1.3678 -3.0747 2.3250 35 1 3.1935 -6.0632 2.7376 36 1 4.0939 -6.9158 4.8597 37 1 5.0385 -7.2365 8.0899 38 1 2.4920 -1.3085 7.8948 39 1 1.5707 -0.3562 5.8228 40 1 1.6043 -1.6747 3.7442 41 1 2.0817 -3.9191 -2.1460 42 1 3.4139 -6.0453 -0.2640 43 1 3.1705 -6.2096 -2.0849 44 1 4.5889 -4.1406 -2.4608 45 1 4.8319 -3.9760 -0.6401 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076019218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:29 Heat of formation + Delta-G solvation = -76.845076 kcal Electronic energy + Delta-G solvation = -35137.525350 eV Core-core repulsion = 30178.372802 eV Total energy + Delta-G solvation = -4959.152548 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.30794 -48.30017 -42.44942 -41.44603 -39.75989 -38.65465 -36.99121 -36.36919 -35.11555 -34.15647 -33.28311 -31.73350 -29.84900 -28.99157 -27.02250 -25.31531 -25.10204 -24.91621 -24.23372 -23.20343 -22.50355 -21.22982 -20.29982 -19.83297 -18.96350 -18.87410 -18.68014 -18.41187 -17.89162 -17.74009 -17.18436 -16.58439 -16.46773 -16.30645 -15.98687 -15.89275 -15.75181 -15.25568 -15.13850 -14.72119 -14.67522 -14.56287 -14.46700 -14.42924 -14.32362 -14.06009 -13.91535 -13.67800 -13.52207 -13.06512 -13.02414 -12.97993 -12.67618 -12.43867 -12.32612 -12.17748 -12.08906 -11.49118 -11.41255 -11.19784 -10.85622 -10.74632 -10.64854 -10.52830 -9.93940 -9.29131 -8.52658 -8.22241 -6.38375 -0.70305 -0.33644 0.78421 1.39827 1.42385 1.47616 1.51527 1.61700 1.73129 2.14996 2.37366 2.54810 2.78370 2.94677 3.06547 3.11230 3.16866 3.49155 3.66831 3.68735 3.70543 3.73956 3.92771 3.96588 4.00509 4.11736 4.21725 4.25503 4.36611 4.53915 4.67372 4.78662 4.85252 4.86891 4.92507 4.98535 5.04088 5.11485 5.17855 5.24475 5.43359 5.55403 5.59873 5.65157 5.77968 5.90827 5.99164 6.03806 6.61232 6.80742 6.89567 7.32802 7.49244 8.80685 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.009158 B = 0.003356 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.740140 B = 8342.176252 C =10710.395473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.032 3.968 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.045 0.955 9 C 0.256 3.744 10 N -0.585 5.585 11 C 0.703 3.297 12 O -0.599 6.599 13 N -0.671 5.671 14 C 0.160 3.840 15 C -0.113 4.113 16 C -0.155 4.155 17 C 0.096 3.904 18 O -0.309 6.309 19 C 0.401 3.599 20 F -0.209 7.209 21 F -0.211 7.211 22 C 0.120 3.880 23 N -0.479 5.479 24 C 0.134 3.866 25 C -0.156 4.156 26 C -0.071 4.071 27 C -0.104 4.104 28 C 0.081 3.919 29 C -0.181 4.181 30 C -0.186 4.186 31 H 0.270 0.730 32 H 0.031 0.969 33 H 0.027 0.973 34 H 0.415 0.585 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.239 0.761 38 H 0.204 0.796 39 H 0.173 0.827 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -8.656 13.116 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.169 4.169 3 Si 0.775 3.225 4 H -0.203 1.203 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.063 0.937 9 C 0.135 3.865 10 N -0.316 5.316 11 C 0.406 3.594 12 O -0.481 6.481 13 N -0.318 5.318 14 C 0.062 3.938 15 C -0.134 4.134 16 C -0.176 4.176 17 C 0.050 3.950 18 O -0.226 6.226 19 C 0.312 3.688 20 F -0.191 7.191 21 F -0.193 7.193 22 C -0.001 4.001 23 N -0.187 5.187 24 C -0.038 4.038 25 C -0.175 4.175 26 C -0.098 4.098 27 C -0.108 4.108 28 C -0.024 4.024 29 C -0.218 4.218 30 C -0.225 4.225 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.255 0.745 35 H 0.166 0.834 36 H 0.167 0.833 37 H 0.255 0.745 38 H 0.220 0.780 39 H 0.191 0.809 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.897 -9.447 13.887 17.495 hybrid contribution -0.323 1.518 -1.507 2.163 sum 4.574 -7.929 12.380 15.397 Atomic orbital electron populations 1.69973 1.06834 1.28381 1.49896 1.25493 0.95482 1.01708 0.94226 0.85741 0.78546 0.79485 0.78705 1.20320 1.20267 1.19916 1.21548 0.92981 0.91562 1.52476 0.93682 1.19075 0.87217 0.82599 0.97602 1.46805 1.46840 1.34935 1.02986 1.15944 0.81275 0.81377 0.80760 1.90660 1.34503 1.37076 1.85870 1.42757 1.37470 1.48797 1.02825 1.17508 0.99450 0.92595 0.84244 1.21173 0.99668 0.94083 0.98499 1.21366 1.03672 1.01169 0.91383 1.18447 0.98711 0.92310 0.85490 1.86688 1.73434 1.31528 1.30958 1.24419 0.74458 0.75303 0.94588 1.93076 1.64270 1.68551 1.93186 1.93080 1.58050 1.95728 1.72439 1.17868 0.99948 0.92895 0.89429 1.68120 1.16158 1.06923 1.27545 1.23689 0.90356 0.90461 0.99336 1.22291 1.00166 1.02657 0.92426 1.21540 0.95752 0.92009 1.00458 1.18456 1.03399 0.95932 0.93046 1.21688 0.94902 0.99274 0.86508 1.23730 1.02278 0.90856 1.04963 1.23129 0.93906 1.03212 1.02228 0.92083 0.95084 0.95507 0.74494 0.83429 0.83311 0.74525 0.77976 0.80935 0.84434 0.84267 0.86947 0.86819 0.86903 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.00 13.29 21.45 0.28 -46.72 16 2 C 0.03 1.61 5.46 84.66 0.46 2.08 16 3 Si 0.95 40.32 29.54 68.60 2.03 42.35 16 4 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.55 -27.39 9.39 25.60 0.24 -27.15 16 8 H 0.04 2.39 7.81 -2.91 -0.02 2.36 16 9 C 0.26 11.60 5.15 85.63 0.44 12.04 16 10 N -0.58 -24.14 2.82 -820.04 -2.32 -26.46 16 11 C 0.70 29.20 7.92 179.05 1.42 30.62 16 12 O -0.60 -25.59 9.23 -3.99 -0.04 -25.62 16 13 N -0.67 -25.67 4.97 -316.43 -1.57 -27.25 16 14 C 0.16 5.84 6.40 38.43 0.25 6.08 16 15 C -0.11 -3.99 8.71 22.38 0.20 -3.80 16 16 C -0.15 -4.89 8.24 22.33 0.18 -4.70 16 17 C 0.10 3.01 6.53 22.77 0.15 3.16 16 18 O -0.31 -7.98 10.22 -93.02 -0.95 -8.93 16 19 C 0.40 7.01 5.98 113.37 0.68 7.68 16 20 F -0.21 -4.33 15.58 44.97 0.70 -3.63 16 21 F -0.21 -4.61 15.58 44.97 0.70 -3.91 16 22 C 0.12 3.95 6.61 40.36 0.27 4.22 16 23 N -0.48 -14.08 10.13 -188.41 -1.91 -15.99 16 24 C 0.13 2.99 11.15 85.05 0.95 3.94 16 25 C -0.16 -3.58 10.03 22.15 0.22 -3.36 16 26 C -0.07 -2.15 9.54 22.47 0.21 -1.93 16 27 C -0.10 -3.52 5.75 -21.20 -0.12 -3.65 16 28 C 0.08 2.93 6.62 44.99 0.30 3.23 16 29 C -0.18 -5.81 9.63 30.59 0.29 -5.51 16 30 C -0.19 -6.37 9.86 30.59 0.30 -6.07 16 31 H 0.27 13.26 8.31 -92.70 -0.77 12.48 16 32 H 0.03 1.47 8.03 -2.39 -0.02 1.46 16 33 H 0.03 1.23 6.09 -2.39 -0.01 1.22 16 34 H 0.42 15.62 5.09 -92.71 -0.47 15.15 16 35 H 0.15 5.52 5.83 -2.91 -0.02 5.50 16 36 H 0.15 4.22 5.01 -2.91 -0.01 4.21 16 37 H 0.24 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.20 2.63 8.06 -2.91 -0.02 2.60 16 39 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.14 4.32 6.86 -2.91 -0.02 4.30 16 41 H 0.14 4.57 8.09 -2.39 -0.02 4.55 16 42 H 0.11 4.16 5.28 -3.19 -0.02 4.15 16 43 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 45 H 0.06 2.64 7.52 -2.38 -0.02 2.62 16 Total: -1.00 -65.28 380.12 3.97 -61.30 By element: Atomic # 1 Polarization: 37.37 SS G_CDS: 0.61 Total: 37.99 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.44 Total: 16.87 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -5.51 Total: -116.41 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.99 Total: -34.56 kcal Atomic # 9 Polarization: -8.94 SS G_CDS: 1.40 Total: -7.54 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -65.28 3.97 -61.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076019218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.544 kcal (2) G-P(sol) polarization free energy of solvation -65.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds