Wall clock time and date at job start Tue Mar 31 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46500 * 119.99595 * 2 1 4 4 C 1.50703 * 109.47409 * 269.99873 * 3 2 1 5 5 H 1.08002 * 119.99382 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99807 * 180.02562 * 4 3 2 7 7 N 1.31503 * 120.00194 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99622 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47029 * 60.00020 * 8 6 4 10 10 H 1.48497 * 109.47238 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47230 * 300.00236 * 8 6 4 12 12 C 1.34779 * 120.00260 * 180.02562 * 2 1 3 13 13 O 1.21588 * 120.00067 * 179.97438 * 12 2 1 14 14 N 1.34780 * 119.99623 * 359.97438 * 12 2 1 15 15 C 1.40059 * 119.99442 * 174.59760 * 14 12 2 16 16 C 1.38883 * 120.01191 * 326.09535 * 15 14 12 17 17 C 1.38194 * 120.08301 * 179.97438 * 16 15 14 18 18 C 1.38312 * 120.12046 * 0.02562 * 17 16 15 19 19 F 1.35098 * 119.99036 * 179.97438 * 18 17 16 20 20 C 1.39084 * 120.02253 * 359.97438 * 18 17 16 21 21 N 1.39982 * 120.04390 * 179.97438 * 20 18 17 22 22 C 1.34779 * 119.99999 * 160.47824 * 21 20 18 23 23 O 1.21650 * 119.99893 * 354.55553 * 22 21 20 24 24 C 1.47168 * 119.99849 * 174.54906 * 22 21 20 25 25 C 1.44430 * 123.46372 * 180.02562 * 24 22 21 26 26 C 1.32764 * 113.08868 * 180.02562 * 25 24 22 27 27 S 1.75510 * 110.57729 * 359.97438 * 26 25 24 28 28 C 1.36025 * 123.46501 * 359.71197 * 24 22 21 29 29 C 1.38734 * 120.00864 * 146.33179 * 15 14 12 30 30 H 1.08999 * 109.47209 * 269.99560 * 1 2 3 31 31 H 1.08998 * 109.47469 * 30.00283 * 1 2 3 32 32 H 1.09006 * 109.46920 * 149.99760 * 1 2 3 33 33 H 1.09002 * 109.47071 * 30.00353 * 3 2 1 34 34 H 1.09001 * 109.46715 * 149.99999 * 3 2 1 35 35 H 0.97006 * 120.00084 * 179.97438 * 7 6 4 36 36 H 0.96994 * 120.00111 * 354.59870 * 14 12 2 37 37 H 1.08003 * 119.96162 * 359.97438 * 16 15 14 38 38 H 1.08005 * 119.93839 * 179.97438 * 17 16 15 39 39 H 0.96998 * 120.00191 * 340.20690 * 21 20 18 40 40 H 1.08002 * 123.45467 * 0.02562 * 25 24 22 41 41 H 1.08000 * 124.71358 * 180.02562 * 26 25 24 42 42 H 1.08002 * 124.58923 * 359.97438 * 28 24 22 43 43 H 1.08000 * 120.06188 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1268 2.8776 -1.6726 7 7 3.5549 3.6171 -0.6731 8 14 3.4388 3.4165 -3.4338 9 1 2.1415 3.5943 -4.1342 10 1 4.1821 4.7020 -3.4338 11 1 4.2412 2.3813 -4.1335 12 6 2.1390 -1.1672 -0.0005 13 8 3.3549 -1.1672 -0.0010 14 7 1.4651 -2.3344 -0.0005 15 6 2.1607 -3.5446 -0.1153 16 6 3.3133 -3.6128 -0.8872 17 6 4.0011 -4.8060 -1.0010 18 6 3.5439 -5.9358 -0.3472 19 9 4.2181 -7.1010 -0.4607 20 6 2.3902 -5.8728 0.4271 21 7 1.9268 -7.0161 1.0886 22 6 1.0747 -6.8957 2.1259 23 8 0.7858 -5.7930 2.5508 24 6 0.4939 -8.0981 2.7443 25 6 -0.4259 -8.0562 3.8571 26 6 -0.8208 -9.2607 4.2519 27 16 -0.0757 -10.5077 3.2670 28 6 0.7632 -9.3631 2.3228 29 6 1.6960 -4.6767 0.5382 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8899 -0.5139 32 1 -0.3633 -0.8900 -0.5139 33 1 1.6083 2.0284 0.5139 34 1 3.1498 1.1384 0.5138 35 1 4.0323 4.4428 -0.8503 36 1 0.4984 -2.3363 0.0789 37 1 3.6724 -2.7323 -1.3992 38 1 4.8969 -4.8565 -1.6023 39 1 2.2158 -7.8952 0.7979 40 1 -0.7583 -7.1390 4.3205 41 1 -1.5061 -9.4472 5.0656 42 1 1.4213 -9.6089 1.5025 43 1 0.7976 -4.6262 1.1354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085559970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:19 Heat of formation + Delta-G solvation = -22.574671 kcal Electronic energy + Delta-G solvation = -30716.447306 eV Core-core repulsion = 26190.028181 eV Total energy + Delta-G solvation = -4526.419125 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.100 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.90956 -40.97293 -40.01750 -38.35186 -37.20253 -35.52367 -34.77876 -34.00374 -32.51187 -31.03230 -29.71406 -28.78949 -27.58302 -25.78434 -25.61785 -23.65773 -23.39567 -22.12424 -21.50150 -19.80091 -19.46916 -18.94338 -17.98115 -17.63925 -17.36343 -17.07999 -16.54871 -16.18423 -15.96410 -15.62797 -15.24636 -15.03359 -14.84676 -14.46616 -14.14625 -14.08232 -13.68271 -13.57738 -13.46473 -13.19335 -13.08534 -12.93717 -12.83523 -12.69351 -12.29684 -12.16703 -11.92728 -11.81624 -11.53906 -11.19683 -10.97088 -10.91422 -10.56464 -10.16155 -10.01372 -9.81904 -9.66480 -9.60037 -9.30215 -9.00554 -8.43716 -8.42818 -7.86610 -7.56887 -6.03570 -4.08535 0.17888 0.99244 1.09277 1.23887 1.37432 1.63152 2.54883 2.88324 3.16317 3.32508 3.37150 3.40440 3.54730 4.00688 4.15867 4.20536 4.34836 4.40725 4.52704 4.70684 4.79297 4.85755 5.21231 5.25758 5.30051 5.31711 5.35378 5.50054 5.56314 5.64670 5.73726 5.85981 5.97215 6.09109 6.15810 6.36152 6.43357 6.62449 6.80222 6.98245 7.14842 7.34823 7.48605 7.64426 7.70249 7.93718 8.22937 8.54456 8.91637 9.20425 9.56611 11.04253 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.001820 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.984347 B =15383.233850 C =16612.148373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.610 5.610 3 C 0.259 3.741 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.698 3.302 13 O -0.566 6.566 14 N -0.693 5.693 15 C 0.200 3.800 16 C -0.110 4.110 17 C -0.107 4.107 18 C 0.034 3.966 19 F -0.145 7.145 20 C 0.137 3.863 21 N -0.659 5.659 22 C 0.578 3.422 23 O -0.506 6.506 24 C -0.154 4.154 25 C -0.083 4.083 26 C -0.235 4.235 27 S 0.195 5.805 28 C -0.212 4.212 29 C -0.152 4.152 30 H 0.046 0.954 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.404 0.596 37 H 0.152 0.848 38 H 0.141 0.859 39 H 0.411 0.589 40 H 0.158 0.842 41 H 0.172 0.828 42 H 0.171 0.829 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.312 -30.186 6.329 32.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.346 5.346 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.400 3.600 13 O -0.442 6.442 14 N -0.342 5.342 15 C 0.102 3.898 16 C -0.132 4.132 17 C -0.127 4.127 18 C 0.011 3.989 19 F -0.124 7.124 20 C 0.041 3.959 21 N -0.302 5.302 22 C 0.365 3.635 23 O -0.382 6.382 24 C -0.173 4.173 25 C -0.111 4.111 26 C -0.370 4.370 27 S 0.461 5.539 28 C -0.351 4.351 29 C -0.175 4.175 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.241 0.759 37 H 0.170 0.830 38 H 0.159 0.841 39 H 0.248 0.752 40 H 0.175 0.825 41 H 0.190 0.810 42 H 0.188 0.812 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.669 -30.715 6.719 32.894 hybrid contribution 0.114 1.294 -1.148 1.733 sum -9.555 -29.421 5.571 31.431 Atomic orbital electron populations 1.21622 0.81562 1.02539 1.00536 1.47505 1.05815 1.06276 1.74956 1.19271 0.92422 0.76764 0.97536 1.21403 1.36655 1.06302 0.92293 0.92491 1.24927 0.95354 0.96376 0.97427 1.69918 1.38218 1.14394 1.30774 0.86550 0.78321 0.77816 0.84659 1.20302 1.21197 1.20183 1.15909 0.85575 0.80000 0.78565 1.90912 1.11238 1.85486 1.56547 1.42991 1.10141 1.03556 1.77485 1.17388 0.93526 0.85022 0.93888 1.21234 0.95414 0.98172 0.98361 1.20833 1.00929 0.90657 1.00235 1.17205 0.92771 0.83018 1.05909 1.91425 1.79390 1.46291 1.95325 1.17271 0.93638 0.87972 0.97028 1.43122 1.46449 1.08665 1.32003 1.17682 0.78409 0.88612 0.78778 1.90759 1.59562 1.26586 1.61278 1.20185 1.04005 0.92170 1.00904 1.21155 0.95989 0.98969 0.95018 1.25569 1.08521 0.95905 1.07007 1.83147 1.38221 1.08659 1.23895 1.25749 1.06083 0.97425 1.05816 1.21136 1.03665 0.90433 1.02279 0.93538 0.90179 0.93020 0.94721 0.93592 0.92635 0.75935 0.83043 0.84077 0.75222 0.82490 0.81025 0.81165 0.81870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.16 59.85 0.61 1.88 16 2 N -0.61 -13.01 2.86 -188.73 -0.54 -13.55 16 3 C 0.26 6.77 5.16 -5.19 -0.03 6.74 16 4 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 5 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 6 C 0.06 1.75 5.46 -17.83 -0.10 1.65 16 7 N -0.89 -26.50 13.28 55.43 0.74 -25.76 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 C 0.70 14.95 8.01 -86.91 -0.70 14.25 16 13 O -0.57 -14.37 13.65 5.29 0.07 -14.29 16 14 N -0.69 -11.54 5.18 -14.22 -0.07 -11.61 16 15 C 0.20 3.23 6.27 -83.68 -0.52 2.70 16 16 C -0.11 -1.81 8.65 -39.36 -0.34 -2.15 16 17 C -0.11 -1.47 10.01 -39.57 -0.40 -1.87 16 18 C 0.03 0.44 7.30 -39.24 -0.29 0.15 16 19 F -0.15 -1.74 16.75 2.25 0.04 -1.70 16 20 C 0.14 1.79 6.51 -83.64 -0.54 1.24 16 21 N -0.66 -6.82 5.31 -10.86 -0.06 -6.88 16 22 C 0.58 6.52 7.64 -12.63 -0.10 6.42 16 23 O -0.51 -7.34 13.69 5.23 0.07 -7.27 16 24 C -0.15 -1.31 5.98 -104.63 -0.63 -1.94 16 25 C -0.08 -0.64 10.10 -39.02 -0.39 -1.03 16 26 C -0.24 -1.28 11.12 28.86 0.32 -0.96 16 27 S 0.20 0.89 23.02 -107.50 -2.48 -1.59 16 28 C -0.21 -1.25 10.38 29.94 0.31 -0.94 16 29 C -0.15 -2.20 8.70 -39.21 -0.34 -2.54 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 32 H 0.05 0.65 6.45 -51.93 -0.33 0.31 16 33 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.36 7.42 -51.93 -0.39 0.97 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.40 5.41 6.63 -40.82 -0.27 5.14 16 37 H 0.15 2.85 6.46 -52.48 -0.34 2.51 16 38 H 0.14 1.65 8.06 -52.48 -0.42 1.22 16 39 H 0.41 3.04 6.87 -40.82 -0.28 2.76 16 40 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.17 0.54 8.06 -52.49 -0.42 0.11 16 42 H 0.17 0.59 7.02 -52.49 -0.37 0.22 16 43 H 0.16 2.37 5.42 -52.49 -0.28 2.08 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -35.35 386.27 -9.22 -44.57 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -4.34 Total: 7.04 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: -3.45 Total: 8.45 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 0.07 Total: -57.80 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: 0.14 Total: -21.56 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.48 Total: -1.59 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.35 -9.22 -44.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085559970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.993 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds