Wall clock time and date at job start Tue Mar 31 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47611 * 2 1 4 4 C 1.50699 * 109.47342 * 120.00147 * 2 1 3 5 5 H 1.07995 * 120.00306 * 119.99264 * 4 2 1 6 6 C 1.37876 * 119.99776 * 300.00272 * 4 2 1 7 7 N 1.31507 * 120.00211 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99951 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47347 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47134 * 299.99858 * 8 6 4 11 11 H 1.48498 * 109.47019 * 59.99714 * 8 6 4 12 12 N 1.46502 * 109.47018 * 239.99942 * 2 1 3 13 13 C 1.46499 * 120.00084 * 300.00332 * 12 2 1 14 14 C 1.34777 * 120.00015 * 120.00051 * 12 2 1 15 15 O 1.21593 * 120.00023 * 0.02562 * 14 12 2 16 16 N 1.34774 * 119.99861 * 180.02562 * 14 12 2 17 17 C 1.40178 * 119.99702 * 175.39440 * 16 14 12 18 18 C 1.39367 * 120.42604 * 34.95585 * 17 16 14 19 19 C 1.38309 * 118.43147 * 180.02562 * 18 17 16 20 20 C 1.38923 * 119.18570 * 0.02562 * 19 18 17 21 21 O 1.35739 * 119.61540 * 179.97438 * 20 19 18 22 22 C 1.35985 * 117.99802 * 185.03759 * 21 20 19 23 23 C 1.38669 * 120.04124 * 260.11685 * 22 21 20 24 24 C 1.38177 * 119.99088 * 179.74803 * 23 22 21 25 25 C 1.38466 * 120.07027 * 0.50644 * 24 23 22 26 26 F 1.35100 * 119.95824 * 179.74459 * 25 24 23 27 27 C 1.38442 * 120.08214 * 359.76960 * 25 24 23 28 28 C 1.38331 * 120.00755 * 359.97438 * 27 25 24 29 29 F 1.35098 * 120.03624 * 179.97438 * 28 27 25 30 30 N 1.32238 * 120.77478 * 359.97438 * 20 19 18 31 31 C 1.31941 * 121.71381 * 359.70617 * 30 20 19 32 32 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46791 * 300.00020 * 1 2 3 34 34 H 1.08998 * 109.47112 * 59.99964 * 1 2 3 35 35 H 0.97001 * 120.00149 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47325 * 89.99513 * 13 12 2 37 37 H 1.08996 * 109.47057 * 209.99957 * 13 12 2 38 38 H 1.08999 * 109.47101 * 330.00008 * 13 12 2 39 39 H 0.97002 * 120.00314 * 355.39722 * 16 14 12 40 40 H 1.08002 * 120.77932 * 359.97438 * 18 17 16 41 41 H 1.07999 * 120.41038 * 180.02562 * 19 18 17 42 42 H 1.07996 * 120.00311 * 0.02562 * 23 22 21 43 43 H 1.07992 * 119.96391 * 180.23219 * 24 23 22 44 44 H 1.08001 * 119.99707 * 179.97438 * 27 25 24 45 45 H 1.07995 * 119.63469 * 180.31346 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 1.8270 -0.4200 5.2205 10 1 1.8259 -2.5203 4.0077 11 1 3.8064 -1.1210 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0873 1.1283 -1.8907 16 7 3.2420 -0.6709 -3.1840 17 6 3.9664 0.0353 -4.1543 18 6 4.8328 1.0610 -3.7806 19 6 5.5267 1.7308 -4.7720 20 6 5.3382 1.3622 -6.0981 21 8 6.0143 2.0141 -7.0781 22 6 5.7281 1.6987 -8.3696 23 6 6.5564 0.8381 -9.0739 24 6 6.2618 0.5142 -10.3845 25 6 5.1457 1.0564 -10.9991 26 9 4.8626 0.7422 -12.2822 27 6 4.3198 1.9204 -10.3005 28 6 4.6088 2.2428 -8.9866 29 9 3.8035 3.0863 -8.3045 30 7 4.5077 0.3837 -6.4169 31 6 3.8340 -0.2813 -5.4979 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 0.7095 1.1617 3.4844 36 1 0.7375 -2.1444 -1.9993 37 1 2.4628 -2.5819 -1.9864 38 1 1.5294 -2.5969 -0.4709 39 1 3.0636 -1.6167 -3.3048 40 1 4.9587 1.3270 -2.7415 41 1 6.2067 2.5306 -4.5184 42 1 7.4292 0.4175 -8.5968 43 1 6.9051 -0.1590 -10.9314 44 1 3.4499 2.3428 -10.7813 45 1 3.1684 -1.0779 -5.7956 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086299525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:30 Heat of formation + Delta-G solvation = -61.172748 kcal Electronic energy + Delta-G solvation = -33254.288869 eV Core-core repulsion = 28295.815923 eV Total energy + Delta-G solvation = -4958.472945 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.43657 -49.31301 -41.24155 -40.20336 -39.07300 -37.71272 -35.70680 -34.55601 -32.92152 -32.26191 -31.43489 -30.47424 -29.58795 -28.42946 -26.26171 -25.27542 -24.54428 -23.78404 -23.50465 -22.68145 -21.28990 -19.64835 -19.09776 -18.56951 -18.08965 -17.89453 -17.40148 -16.94882 -16.30955 -16.28100 -16.20113 -15.66863 -15.56468 -15.26206 -15.07558 -14.92014 -14.74149 -14.47896 -14.45181 -14.30180 -13.73673 -13.44028 -13.26891 -12.93208 -12.80804 -12.72179 -12.60293 -12.43247 -12.18630 -11.74197 -11.66293 -11.56372 -11.11039 -10.91408 -10.77147 -10.52129 -10.34142 -10.22167 -9.93402 -9.72016 -9.56009 -9.33156 -9.17495 -9.03424 -8.48607 -8.07021 -7.63024 -6.12650 -4.21205 0.32001 0.51869 1.02971 1.24532 2.45590 2.98442 3.17263 3.23963 3.29902 3.31453 3.39551 3.50633 3.83631 3.86891 4.10781 4.15795 4.28415 4.36498 4.42152 4.65965 4.78600 4.95418 4.98676 5.18510 5.21399 5.27996 5.37094 5.48551 5.50077 5.56367 5.57470 5.72700 5.87328 6.05602 6.16581 6.21545 6.29958 6.61251 6.74268 6.77704 6.93216 7.05937 7.16128 7.37227 7.60743 7.69808 7.73354 7.99045 8.13899 8.50934 8.78442 9.06563 9.45548 10.92528 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.001662 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.667406 B =16842.364809 C =16962.374283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.601 5.601 13 C 0.083 3.917 14 C 0.697 3.303 15 O -0.580 6.580 16 N -0.689 5.689 17 C 0.109 3.891 18 C -0.045 4.045 19 C -0.153 4.153 20 C 0.277 3.723 21 O -0.241 6.241 22 C 0.062 3.938 23 C -0.059 4.059 24 C -0.152 4.152 25 C 0.130 3.870 26 F -0.129 7.129 27 C -0.183 4.183 28 C 0.133 3.867 29 F -0.119 7.119 30 N -0.511 5.511 31 C 0.102 3.898 32 H 0.029 0.971 33 H 0.095 0.905 34 H 0.011 0.989 35 H 0.265 0.735 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.405 0.595 40 H 0.165 0.835 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 -3.567 -24.517 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.211 1.211 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.335 5.335 13 C -0.061 4.061 14 C 0.399 3.601 15 O -0.458 6.458 16 N -0.340 5.340 17 C 0.010 3.990 18 C -0.073 4.073 19 C -0.174 4.174 20 C 0.099 3.901 21 O -0.148 6.148 22 C 0.018 3.982 23 C -0.078 4.078 24 C -0.171 4.171 25 C 0.111 3.889 26 F -0.108 7.108 27 C -0.203 4.203 28 C 0.112 3.888 29 F -0.097 7.097 30 N -0.232 5.232 31 C -0.057 4.057 32 H 0.049 0.951 33 H 0.113 0.887 34 H 0.030 0.970 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.243 0.757 40 H 0.183 0.817 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.171 0.829 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.022 -2.613 -24.960 26.669 hybrid contribution -0.159 -0.813 1.449 1.669 sum 8.863 -3.426 -23.511 25.359 Atomic orbital electron populations 1.22103 0.98098 0.99440 1.00902 1.18927 0.90749 0.94331 0.78763 0.91660 1.21265 1.32090 1.13159 0.90244 0.92282 1.24887 0.94905 0.94982 0.98964 1.69862 1.36099 1.22444 1.23984 0.86536 0.79220 0.79533 0.81964 1.21146 1.20249 1.20252 1.47634 1.50568 1.11588 1.23679 1.21572 0.98385 0.83362 1.02801 1.15992 0.79667 0.84931 0.79553 1.90865 1.62790 1.15562 1.76537 1.42856 1.57511 1.12703 1.20905 1.18485 0.94579 0.96911 0.89051 1.21782 0.90553 0.93422 1.01511 1.20990 1.04094 1.03476 0.88858 1.19825 0.92556 0.90915 0.86766 1.84684 1.59456 1.59436 1.11182 1.18502 0.95447 0.99850 0.84372 1.20988 0.99570 0.93546 0.93668 1.21049 0.97664 1.02881 0.95463 1.17288 0.95239 0.96924 0.79483 1.91546 1.93290 1.91298 1.34650 1.20948 1.03166 1.02476 0.93665 1.17615 0.88953 0.92001 0.90199 1.91574 1.71454 1.67474 1.79246 1.67161 1.09587 1.08435 1.38007 1.22081 0.97741 0.99408 0.86427 0.95142 0.88697 0.96967 0.92533 0.93654 0.93489 0.89498 0.75729 0.81728 0.83628 0.83160 0.83295 0.82872 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.27 6.69 2.64 -69.08 -0.18 6.50 16 3 H 0.07 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -13.71 7.99 -34.44 -0.28 -13.98 16 5 H 0.06 1.50 7.33 -52.49 -0.38 1.11 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.42 11.32 55.43 0.63 -23.80 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.60 -12.07 2.75 -181.01 -0.50 -12.57 16 13 C 0.08 1.26 9.24 59.85 0.55 1.81 16 14 C 0.70 13.72 8.14 -86.92 -0.71 13.02 16 15 O -0.58 -13.55 13.15 5.28 0.07 -13.48 16 16 N -0.69 -10.06 5.24 -14.09 -0.07 -10.14 16 17 C 0.11 1.55 6.32 -83.46 -0.53 1.02 16 18 C -0.04 -0.67 8.80 -39.14 -0.34 -1.02 16 19 C -0.15 -2.03 10.04 -39.30 -0.39 -2.42 16 20 C 0.28 3.73 7.43 -17.12 -0.13 3.60 16 21 O -0.24 -3.03 9.83 -3.39 -0.03 -3.06 16 22 C 0.06 0.68 4.99 -39.17 -0.20 0.48 16 23 C -0.06 -0.47 9.98 -39.44 -0.39 -0.87 16 24 C -0.15 -1.03 10.02 -39.52 -0.40 -1.43 16 25 C 0.13 1.05 7.30 -39.42 -0.29 0.76 16 26 F -0.13 -1.08 17.27 2.25 0.04 -1.04 16 27 C -0.18 -1.62 10.00 -39.47 -0.39 -2.01 16 28 C 0.13 1.47 7.26 -39.30 -0.29 1.18 16 29 F -0.12 -1.56 17.11 2.25 0.04 -1.52 16 30 N -0.51 -6.80 9.30 -13.17 -0.12 -6.93 16 31 C 0.10 1.27 11.11 -17.35 -0.19 1.07 16 32 H 0.03 0.64 7.67 -51.93 -0.40 0.25 16 33 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.54 6.30 -51.93 -0.33 0.21 16 38 H 0.09 1.42 7.02 -51.93 -0.36 1.06 16 39 H 0.41 4.55 6.52 -40.82 -0.27 4.28 16 40 H 0.17 2.78 6.31 -52.49 -0.33 2.45 16 41 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 42 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 45 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 391.35 15.07 5.90 5.90 Total: -1.00 -31.56 391.35 -7.83 -39.39 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.84 Total: 5.54 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -3.91 Total: 6.29 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.07 Total: -53.43 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.04 Total: -16.55 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.08 Total: -2.56 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.56 -7.83 -39.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086299525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.781 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds