Wall clock time and date at job start Tue Mar 31 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.47611 * 2 1 4 4 C 1.50699 * 109.47342 * 120.00147 * 2 1 3 5 5 H 1.07995 * 120.00306 * 119.99264 * 4 2 1 6 6 C 1.37876 * 119.99776 * 300.00272 * 4 2 1 7 7 N 1.31507 * 120.00211 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99951 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47347 * 179.97438 * 8 6 4 10 10 H 1.48495 * 109.47134 * 299.99858 * 8 6 4 11 11 H 1.48498 * 109.47019 * 59.99714 * 8 6 4 12 12 N 1.46502 * 109.47018 * 239.99942 * 2 1 3 13 13 C 1.46499 * 120.00084 * 300.00332 * 12 2 1 14 14 C 1.34777 * 120.00015 * 120.00051 * 12 2 1 15 15 O 1.21593 * 120.00023 * 0.02562 * 14 12 2 16 16 N 1.34774 * 119.99861 * 180.02562 * 14 12 2 17 17 C 1.40178 * 119.99702 * 175.39440 * 16 14 12 18 18 C 1.39367 * 120.42604 * 34.95585 * 17 16 14 19 19 C 1.38309 * 118.43147 * 180.02562 * 18 17 16 20 20 C 1.38923 * 119.18570 * 0.02562 * 19 18 17 21 21 O 1.35739 * 119.61540 * 179.97438 * 20 19 18 22 22 C 1.35985 * 117.99802 * 185.03759 * 21 20 19 23 23 C 1.38669 * 120.04124 * 260.11685 * 22 21 20 24 24 C 1.38177 * 119.99088 * 179.74803 * 23 22 21 25 25 C 1.38466 * 120.07027 * 0.50644 * 24 23 22 26 26 F 1.35100 * 119.95824 * 179.74459 * 25 24 23 27 27 C 1.38442 * 120.08214 * 359.76960 * 25 24 23 28 28 C 1.38331 * 120.00755 * 359.97438 * 27 25 24 29 29 F 1.35098 * 120.03624 * 179.97438 * 28 27 25 30 30 N 1.32238 * 120.77478 * 359.97438 * 20 19 18 31 31 C 1.31941 * 121.71381 * 359.70617 * 30 20 19 32 32 H 1.08993 * 109.47307 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46791 * 300.00020 * 1 2 3 34 34 H 1.08998 * 109.47112 * 59.99964 * 1 2 3 35 35 H 0.97001 * 120.00149 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47325 * 89.99513 * 13 12 2 37 37 H 1.08996 * 109.47057 * 209.99957 * 13 12 2 38 38 H 1.08999 * 109.47101 * 330.00008 * 13 12 2 39 39 H 0.97002 * 120.00314 * 355.39722 * 16 14 12 40 40 H 1.08002 * 120.77932 * 359.97438 * 18 17 16 41 41 H 1.07999 * 120.41038 * 180.02562 * 19 18 17 42 42 H 1.07996 * 120.00311 * 0.02562 * 23 22 21 43 43 H 1.07992 * 119.96391 * 180.23219 * 24 23 22 44 44 H 1.08001 * 119.99707 * 179.97438 * 27 25 24 45 45 H 1.07995 * 119.63469 * 180.31346 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 1.8270 -0.4200 5.2205 10 1 1.8259 -2.5203 4.0077 11 1 3.8064 -1.1210 4.0081 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4281 14 6 2.7932 -0.0357 -2.0834 15 8 3.0873 1.1283 -1.8907 16 7 3.2420 -0.6709 -3.1840 17 6 3.9664 0.0353 -4.1543 18 6 4.8328 1.0610 -3.7806 19 6 5.5267 1.7308 -4.7720 20 6 5.3382 1.3622 -6.0981 21 8 6.0143 2.0141 -7.0781 22 6 5.7281 1.6987 -8.3696 23 6 6.5564 0.8381 -9.0739 24 6 6.2618 0.5142 -10.3845 25 6 5.1457 1.0564 -10.9991 26 9 4.8626 0.7422 -12.2822 27 6 4.3198 1.9204 -10.3005 28 6 4.6088 2.2428 -8.9866 29 9 3.8035 3.0863 -8.3045 30 7 4.5077 0.3837 -6.4169 31 6 3.8340 -0.2813 -5.4979 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 0.7095 1.1617 3.4844 36 1 0.7375 -2.1444 -1.9993 37 1 2.4628 -2.5819 -1.9864 38 1 1.5294 -2.5969 -0.4709 39 1 3.0636 -1.6167 -3.3048 40 1 4.9587 1.3270 -2.7415 41 1 6.2067 2.5306 -4.5184 42 1 7.4292 0.4175 -8.5968 43 1 6.9051 -0.1590 -10.9314 44 1 3.4499 2.3428 -10.7813 45 1 3.1684 -1.0779 -5.7956 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086299525.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:29 Heat of formation + Delta-G solvation = -80.405015 kcal Electronic energy + Delta-G solvation = -33255.122842 eV Core-core repulsion = 28295.815923 eV Total energy + Delta-G solvation = -4959.306919 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.19436 -50.07658 -42.27544 -41.42529 -40.13076 -38.59644 -37.31520 -35.95675 -34.71957 -33.36122 -32.11501 -31.70462 -30.84658 -29.60520 -27.62434 -27.27937 -25.54181 -24.65574 -24.45056 -23.65259 -22.77760 -20.97083 -20.20925 -19.45999 -19.29252 -18.63671 -18.58756 -18.36196 -17.90578 -17.06106 -17.01274 -16.96657 -16.67967 -16.42792 -16.20453 -16.06597 -15.87758 -15.57598 -15.48490 -15.15000 -14.93403 -14.63064 -14.54344 -14.35244 -14.00613 -13.83453 -13.75635 -13.50311 -13.24551 -13.07809 -12.90321 -12.84537 -12.73292 -12.63781 -12.41627 -12.17888 -12.11104 -11.70247 -11.30268 -11.15848 -10.91292 -10.55752 -10.47028 -10.22300 -9.76879 -9.47332 -8.96595 -8.12597 -6.29008 -0.40506 -0.13524 -0.01609 0.14198 1.43486 1.45408 1.52217 1.57114 1.76864 2.10694 2.39449 2.43271 2.67553 2.71811 3.01262 3.14121 3.15622 3.25177 3.48696 3.78116 3.80250 3.92443 3.97499 4.02965 4.28854 4.37350 4.57964 4.60194 4.70256 4.72989 4.75454 4.78023 4.88408 4.91249 4.94842 4.98420 5.03843 5.07829 5.14482 5.42522 5.47512 5.52486 5.64399 5.67442 5.95099 6.16184 6.20687 6.22481 6.67922 6.78382 7.04891 7.37518 7.59153 8.91266 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.001662 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.667406 B =16842.364809 C =16962.374283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.278 3.722 3 H 0.012 0.988 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.286 1.286 10 H -0.262 1.262 11 H -0.278 1.278 12 N -0.609 5.609 13 C 0.078 3.922 14 C 0.692 3.308 15 O -0.627 6.627 16 N -0.666 5.666 17 C 0.090 3.910 18 C -0.059 4.059 19 C -0.157 4.157 20 C 0.277 3.723 21 O -0.247 6.247 22 C 0.037 3.963 23 C -0.053 4.053 24 C -0.134 4.134 25 C 0.130 3.870 26 F -0.129 7.129 27 C -0.181 4.181 28 C 0.107 3.893 29 F -0.140 7.140 30 N -0.514 5.514 31 C 0.121 3.879 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.018 0.982 35 H 0.264 0.736 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.424 0.576 40 H 0.139 0.861 41 H 0.159 0.841 42 H 0.172 0.828 43 H 0.183 0.817 44 H 0.165 0.835 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.810 -6.499 -26.808 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.176 3.824 3 H 0.029 0.971 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.790 3.210 9 H -0.212 1.212 10 H -0.186 1.186 11 H -0.203 1.203 12 N -0.343 5.343 13 C -0.065 4.065 14 C 0.394 3.606 15 O -0.508 6.508 16 N -0.318 5.318 17 C -0.009 4.009 18 C -0.087 4.087 19 C -0.178 4.178 20 C 0.100 3.900 21 O -0.153 6.153 22 C -0.006 4.006 23 C -0.071 4.071 24 C -0.152 4.152 25 C 0.111 3.889 26 F -0.107 7.107 27 C -0.201 4.201 28 C 0.087 3.913 29 F -0.118 7.118 30 N -0.236 5.236 31 C -0.038 4.038 32 H 0.067 0.933 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.265 0.735 40 H 0.156 0.844 41 H 0.177 0.823 42 H 0.190 0.810 43 H 0.200 0.800 44 H 0.182 0.818 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.887 -5.603 -27.317 29.586 hybrid contribution -0.357 0.122 1.961 1.997 sum 9.530 -5.481 -25.356 27.637 Atomic orbital electron populations 1.21884 0.97167 1.00177 0.99853 1.18472 0.91363 0.92058 0.80514 0.97051 1.21544 1.31884 1.13154 0.90952 0.91832 1.25725 0.95134 0.95664 1.02004 1.70014 1.37267 1.23830 1.24462 0.85516 0.78346 0.78991 0.78177 1.21207 1.18648 1.20341 1.47460 1.50747 1.13433 1.22625 1.21845 1.01029 0.80413 1.03185 1.16145 0.79499 0.84481 0.80487 1.90841 1.64272 1.17874 1.77768 1.42414 1.56672 1.13343 1.19362 1.18614 0.95070 0.97433 0.89733 1.21634 0.91851 0.94539 1.00693 1.21062 1.04253 1.03713 0.88801 1.19969 0.92251 0.90723 0.87076 1.84677 1.59171 1.59489 1.11974 1.18865 0.96520 1.01490 0.83742 1.21240 0.99476 0.92478 0.93938 1.21391 0.97029 1.01981 0.94821 1.17395 0.95445 0.96668 0.79424 1.91555 1.93330 1.91224 1.34617 1.21062 1.03700 1.02411 0.92920 1.17878 0.89447 0.92885 0.91102 1.91517 1.72146 1.68332 1.79817 1.67284 1.09710 1.08569 1.38008 1.22550 0.96928 0.99206 0.85163 0.93304 0.91371 0.96339 0.92682 0.91401 0.89497 0.90655 0.73491 0.84361 0.82322 0.81023 0.79984 0.81776 0.78680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 8.97 71.98 0.65 -5.58 16 2 C 0.28 14.06 2.64 44.24 0.12 14.17 16 3 H 0.01 0.70 6.90 -2.39 -0.02 0.68 16 4 C -0.54 -28.17 7.99 25.60 0.20 -27.97 16 5 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -52.05 11.32 21.45 0.24 -51.81 16 8 Si 0.96 42.08 29.54 68.60 2.03 44.11 16 9 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 N -0.61 -24.40 2.75 -844.84 -2.33 -26.72 16 13 C 0.08 2.17 9.24 127.77 1.18 3.35 16 14 C 0.69 27.57 8.14 179.06 1.46 29.03 16 15 O -0.63 -30.84 13.15 -4.01 -0.05 -30.89 16 16 N -0.67 -18.62 5.24 -316.76 -1.66 -20.28 16 17 C 0.09 2.48 6.32 38.18 0.24 2.72 16 18 C -0.06 -1.83 8.80 22.56 0.20 -1.63 16 19 C -0.16 -4.24 10.04 22.45 0.23 -4.02 16 20 C 0.28 7.30 7.43 84.80 0.63 7.93 16 21 O -0.25 -6.07 9.83 -35.04 -0.34 -6.41 16 22 C 0.04 0.77 4.99 22.53 0.11 0.88 16 23 C -0.05 -0.71 9.98 22.36 0.22 -0.48 16 24 C -0.13 -1.36 10.02 22.31 0.22 -1.13 16 25 C 0.13 1.76 7.30 22.37 0.16 1.93 16 26 F -0.13 -1.80 17.27 44.97 0.78 -1.02 16 27 C -0.18 -2.96 10.00 22.34 0.22 -2.74 16 28 C 0.11 2.30 7.26 22.45 0.16 2.47 16 29 F -0.14 -3.73 17.11 44.97 0.77 -2.96 16 30 N -0.51 -12.87 9.30 -308.41 -2.87 -15.74 16 31 C 0.12 2.72 11.11 84.78 0.94 3.66 16 32 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 33 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.70 6.30 -2.39 -0.02 1.68 16 38 H 0.07 2.31 7.02 -2.39 -0.02 2.30 16 39 H 0.42 8.26 6.52 -92.71 -0.60 7.65 16 40 H 0.14 5.04 6.31 -2.91 -0.02 5.02 16 41 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 42 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 44 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 45 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -72.65 391.35 4.43 -68.21 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.47 Total: 19.70 kcal Atomic # 6 Polarization: 16.41 SS G_CDS: 7.40 Total: 23.81 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -6.61 Total: -114.54 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.40 Total: -37.30 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 1.55 Total: -3.99 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -72.65 4.43 -68.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086299525.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.192 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds