Wall clock time and date at job start Tue Mar 31 2020 05:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.47161 * 2 1 4 4 C 1.50696 * 109.46932 * 240.00106 * 2 1 3 5 5 H 1.07997 * 120.00301 * 239.99946 * 4 2 1 6 6 C 1.37880 * 120.00289 * 60.00150 * 4 2 1 7 7 N 1.31515 * 119.99637 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00497 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47294 * 89.99796 * 8 6 4 10 10 H 1.48495 * 109.47194 * 210.00260 * 8 6 4 11 11 H 1.48505 * 109.46624 * 329.99760 * 8 6 4 12 12 N 1.46499 * 109.46961 * 120.00196 * 2 1 3 13 13 C 1.46499 * 119.99865 * 60.00332 * 12 2 1 14 14 C 1.34772 * 120.00185 * 239.99908 * 12 2 1 15 15 O 1.21592 * 119.99652 * 359.97438 * 14 12 2 16 16 N 1.34778 * 120.00215 * 180.02562 * 14 12 2 17 17 C 1.40178 * 119.99853 * 174.00591 * 16 14 12 18 18 C 1.39366 * 120.42413 * 334.25097 * 17 16 14 19 19 C 1.38319 * 118.42965 * 179.97438 * 18 17 16 20 20 C 1.38916 * 119.18383 * 359.97438 * 19 18 17 21 21 O 1.35741 * 119.61700 * 180.02562 * 20 19 18 22 22 C 1.35982 * 118.00539 * 185.03668 * 21 20 19 23 23 C 1.38668 * 120.03634 * 260.10458 * 22 21 20 24 24 C 1.38177 * 119.99117 * 179.79304 * 23 22 21 25 25 C 1.38472 * 120.06866 * 0.45141 * 24 23 22 26 26 F 1.35101 * 119.95507 * 179.77179 * 25 24 23 27 27 C 1.38441 * 120.08098 * 359.79992 * 25 24 23 28 28 C 1.38329 * 120.01010 * 359.97268 * 27 25 24 29 29 F 1.35096 * 120.03907 * 179.97438 * 28 27 25 30 30 N 1.32229 * 120.77488 * 0.02562 * 20 19 18 31 31 C 1.31940 * 121.71656 * 359.68108 * 30 20 19 32 32 H 1.08996 * 109.46631 * 300.00145 * 1 2 3 33 33 H 1.08997 * 109.46624 * 59.99929 * 1 2 3 34 34 H 1.09002 * 109.46715 * 179.97438 * 1 2 3 35 35 H 0.97008 * 120.00146 * 179.97438 * 7 6 4 36 36 H 1.09003 * 109.47176 * 269.99353 * 13 12 2 37 37 H 1.08998 * 109.47594 * 29.99327 * 13 12 2 38 38 H 1.09000 * 109.47327 * 149.99902 * 13 12 2 39 39 H 0.96999 * 119.99958 * 354.28721 * 16 14 12 40 40 H 1.07999 * 120.78565 * 359.95069 * 18 17 16 41 41 H 1.08007 * 120.40701 * 180.02562 * 19 18 17 42 42 H 1.07999 * 120.00555 * 0.02562 * 23 22 21 43 43 H 1.08000 * 119.96465 * 180.22657 * 24 23 22 44 44 H 1.07997 * 119.99561 * 180.02562 * 27 25 24 45 45 H 1.08002 * 119.63010 * 180.31417 * 31 30 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3427 -2.1615 -4.4119 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0358 2.0833 15 8 3.0874 1.1282 1.8907 16 7 3.2429 -0.6713 3.1835 17 6 4.1492 -0.0321 4.0409 18 6 4.9907 0.9688 3.5591 19 6 5.8686 1.5723 4.4413 20 6 5.8821 1.1641 5.7691 21 8 6.7398 1.7507 6.6425 22 6 6.8000 1.2562 7.9078 23 6 6.1215 1.8939 8.9353 24 6 6.1799 1.3881 10.2199 25 6 6.9230 0.2500 10.4843 26 9 6.9822 -0.2399 11.7420 27 6 7.6058 -0.3860 9.4616 28 6 7.5458 0.1148 8.1736 29 9 8.2123 -0.5051 7.1753 30 7 5.0693 0.2108 6.1921 31 6 4.2150 -0.3830 5.3807 32 1 -0.3632 0.5139 0.8900 33 1 -0.3632 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 0.7088 1.1614 -3.4844 36 1 0.7376 -2.1445 1.9992 37 1 1.5295 -2.5969 0.4707 38 1 2.4629 -2.5820 1.9862 39 1 2.9425 -1.5725 3.3798 40 1 4.9584 1.2660 2.5213 41 1 6.5348 2.3518 4.1022 42 1 5.5444 2.7836 8.7309 43 1 5.6482 1.8830 11.0191 44 1 8.1847 -1.2738 9.6694 45 1 3.5630 -1.1543 5.7634 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086299529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:33 Heat of formation + Delta-G solvation = -60.956822 kcal Electronic energy + Delta-G solvation = -33225.079943 eV Core-core repulsion = 28266.616361 eV Total energy + Delta-G solvation = -4958.463582 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.43587 -49.33551 -41.23588 -40.23495 -39.07419 -37.70371 -35.73534 -34.58658 -32.93272 -32.24190 -31.43227 -30.47238 -29.59546 -28.43694 -26.27918 -25.28854 -24.55336 -23.78335 -23.49822 -22.69744 -21.29320 -19.67164 -19.08659 -18.57458 -18.09165 -17.88488 -17.36312 -16.95453 -16.33093 -16.28771 -16.24817 -15.67183 -15.53048 -15.23205 -15.20512 -14.91568 -14.69723 -14.46015 -14.44536 -14.31476 -13.70134 -13.43407 -13.23914 -13.12283 -12.75717 -12.70776 -12.61920 -12.41642 -12.18748 -11.75004 -11.68387 -11.58307 -11.13072 -10.91482 -10.79295 -10.56564 -10.35440 -10.23227 -9.95279 -9.70293 -9.56276 -9.34784 -9.18026 -9.03078 -8.50178 -8.01956 -7.62441 -6.14063 -4.22394 0.32535 0.52009 1.05411 1.26413 2.47002 2.95889 3.17813 3.21990 3.29932 3.32625 3.39012 3.47807 3.84353 3.89550 4.11145 4.16935 4.27651 4.37060 4.40206 4.66221 4.78767 4.93920 4.99510 5.17400 5.22194 5.28313 5.37623 5.48501 5.50874 5.56336 5.58491 5.74493 5.85214 6.03948 6.17601 6.20780 6.30866 6.59822 6.72304 6.77492 6.91528 7.04634 7.17552 7.35010 7.59693 7.69667 7.73416 7.97276 8.12210 8.48197 8.77222 9.03147 9.44409 10.91170 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.022051 B = 0.001660 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.481712 B =16861.322610 C =17048.074787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.272 3.728 3 H 0.066 0.934 4 C -0.528 4.528 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.600 5.600 13 C 0.081 3.919 14 C 0.696 3.304 15 O -0.578 6.578 16 N -0.686 5.686 17 C 0.114 3.886 18 C -0.054 4.054 19 C -0.149 4.149 20 C 0.272 3.728 21 O -0.241 6.241 22 C 0.064 3.936 23 C -0.059 4.059 24 C -0.151 4.151 25 C 0.130 3.870 26 F -0.130 7.130 27 C -0.183 4.183 28 C 0.131 3.869 29 F -0.121 7.121 30 N -0.508 5.508 31 C 0.095 3.905 32 H 0.011 0.989 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.406 0.594 40 H 0.170 0.830 41 H 0.146 0.854 42 H 0.151 0.849 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.071 -2.766 23.895 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.172 3.828 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.333 5.333 13 C -0.063 4.063 14 C 0.398 3.602 15 O -0.456 6.456 16 N -0.335 5.335 17 C 0.014 3.986 18 C -0.082 4.082 19 C -0.170 4.170 20 C 0.095 3.905 21 O -0.148 6.148 22 C 0.020 3.980 23 C -0.078 4.078 24 C -0.170 4.170 25 C 0.110 3.890 26 F -0.108 7.108 27 C -0.203 4.203 28 C 0.111 3.889 29 F -0.099 7.099 30 N -0.229 5.229 31 C -0.064 4.064 32 H 0.030 0.970 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.243 0.757 40 H 0.187 0.813 41 H 0.164 0.836 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.171 0.829 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.340 -1.915 24.288 26.092 hybrid contribution 0.108 -1.192 -1.473 1.898 sum 9.448 -3.108 22.815 24.888 Atomic orbital electron populations 1.22110 0.98093 0.99463 1.00917 1.18943 0.90767 0.94349 0.78767 0.91626 1.21298 1.32037 1.13143 0.90201 0.92215 1.24889 0.94915 0.94969 0.98981 1.69875 1.36157 1.22468 1.23887 0.86475 0.79163 0.79293 0.82340 1.20607 1.21061 1.19947 1.47654 1.50854 1.11505 1.23336 1.21594 0.98433 0.83354 1.02937 1.15997 0.79795 0.84854 0.79557 1.90844 1.62720 1.15257 1.76817 1.42887 1.46710 1.18931 1.24932 1.18534 0.92407 0.97199 0.90443 1.21863 0.90433 0.93732 1.02159 1.21000 1.02507 1.03799 0.89712 1.19801 0.90597 0.92241 0.87899 1.84679 1.57344 1.54646 1.18134 1.18501 1.00000 0.94679 0.84866 1.21018 0.95794 1.00088 0.90868 1.21064 1.01593 0.96332 0.97990 1.17288 0.98316 0.94046 0.79343 1.91546 1.94784 1.87231 1.37237 1.20929 1.04921 1.03689 0.90733 1.17592 0.94772 0.91379 0.85129 1.91558 1.77565 1.81424 1.59335 1.67135 1.07327 1.10055 1.38413 1.21966 0.96985 1.00100 0.87336 0.96954 0.88682 0.95128 0.92589 0.93645 0.89434 0.93349 0.75712 0.81284 0.83633 0.83117 0.83280 0.82914 0.82295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.97 37.16 0.33 -3.04 16 2 C 0.27 6.61 2.64 -69.08 -0.18 6.43 16 3 H 0.07 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -13.63 7.99 -34.44 -0.28 -13.91 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.13 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 12 N -0.60 -11.94 2.75 -181.00 -0.50 -12.43 16 13 C 0.08 1.22 9.15 59.85 0.55 1.77 16 14 C 0.70 13.56 8.09 -86.92 -0.70 12.86 16 15 O -0.58 -13.31 12.95 5.28 0.07 -13.24 16 16 N -0.69 -9.99 5.21 -14.10 -0.07 -10.06 16 17 C 0.11 1.63 6.43 -83.47 -0.54 1.09 16 18 C -0.05 -0.82 8.80 -39.13 -0.34 -1.17 16 19 C -0.15 -2.01 10.04 -39.30 -0.39 -2.40 16 20 C 0.27 3.71 7.43 -17.13 -0.13 3.58 16 21 O -0.24 -3.07 9.83 -3.38 -0.03 -3.10 16 22 C 0.06 0.70 4.99 -39.17 -0.20 0.50 16 23 C -0.06 -0.49 9.98 -39.44 -0.39 -0.89 16 24 C -0.15 -1.06 10.02 -39.52 -0.40 -1.46 16 25 C 0.13 1.04 7.30 -39.42 -0.29 0.75 16 26 F -0.13 -1.07 17.27 2.25 0.04 -1.03 16 27 C -0.18 -1.57 10.00 -39.47 -0.39 -1.97 16 28 C 0.13 1.41 7.26 -39.30 -0.29 1.13 16 29 F -0.12 -1.49 17.11 2.25 0.04 -1.45 16 30 N -0.51 -6.81 9.30 -13.17 -0.12 -6.93 16 31 C 0.10 1.18 11.09 -17.35 -0.19 0.99 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 34 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.43 7.02 -51.93 -0.36 1.06 16 38 H 0.05 0.56 6.45 -51.93 -0.34 0.23 16 39 H 0.41 4.54 6.61 -40.82 -0.27 4.27 16 40 H 0.17 2.95 5.98 -52.49 -0.31 2.63 16 41 H 0.15 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.15 1.01 8.06 -52.49 -0.42 0.58 16 43 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 390.99 15.07 5.89 5.89 Total: -1.00 -31.16 390.99 -7.84 -39.00 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.83 Total: 5.72 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -3.92 Total: 5.88 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.07 Total: -53.08 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: 0.04 Total: -16.34 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.08 Total: -2.48 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.16 -7.84 -39.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086299529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.956 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds