Wall clock time and date at job start Tue Mar 31 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 120.00343 * 2 1 4 4 H 1.48500 * 109.47528 * 240.00572 * 3 2 1 5 5 H 1.48502 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46971 * 120.00256 * 3 2 1 7 7 C 1.39940 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99848 * 169.46154 * 7 2 1 9 9 C 1.41435 * 119.99908 * 349.44730 * 7 2 1 10 10 C 1.40792 * 120.17493 * 150.68673 * 9 7 2 11 11 C 1.37711 * 120.04347 * 180.02562 * 10 9 7 12 12 C 1.38365 * 120.41443 * 359.71598 * 11 10 9 13 13 C 1.39902 * 120.35576 * 0.56072 * 12 11 10 14 14 C 1.47853 * 120.02484 * 179.71398 * 13 12 11 15 15 O 1.21568 * 119.99739 * 155.02424 * 14 13 12 16 16 N 1.34777 * 120.00524 * 335.02038 * 14 13 12 17 17 C 1.47299 * 121.14952 * 353.75800 * 16 14 13 18 18 C 1.53535 * 107.57754 * 221.97506 * 17 16 14 19 19 O 1.42966 * 108.79919 * 301.80400 * 18 17 16 20 20 C 1.35896 * 117.76654 * 49.46483 * 19 18 17 21 21 C 1.38696 * 119.66926 * 160.08216 * 20 19 18 22 22 C 1.38209 * 120.05128 * 180.02562 * 21 20 19 23 23 C 1.38275 * 120.30236 * 359.53020 * 22 21 20 24 24 C 1.50704 * 119.97233 * 180.29677 * 23 22 21 25 25 F 1.39904 * 109.46761 * 359.97438 * 24 23 22 26 26 F 1.39901 * 109.47190 * 119.99369 * 24 23 22 27 27 F 1.39901 * 109.47015 * 239.99615 * 24 23 22 28 28 C 1.38258 * 120.06088 * 0.30960 * 23 22 21 29 29 C 1.38590 * 119.87524 * 359.94957 * 28 23 22 30 30 C 1.39049 * 119.94354 * 359.44842 * 13 12 11 31 31 H 0.96998 * 119.99840 * 359.97438 * 1 2 3 32 32 H 1.07997 * 119.97917 * 0.04533 * 10 9 7 33 33 H 1.07997 * 119.79023 * 180.02562 * 11 10 9 34 34 H 1.07997 * 119.82424 * 180.30494 * 12 11 10 35 35 H 1.08991 * 109.84050 * 341.49618 * 17 16 14 36 36 H 1.09005 * 109.83575 * 102.46030 * 17 16 14 37 37 H 1.08994 * 109.58406 * 61.59297 * 18 17 16 38 38 H 1.08999 * 109.58786 * 182.00930 * 18 17 16 39 39 H 1.08001 * 119.97397 * 359.81739 * 21 20 19 40 40 H 1.08006 * 119.85094 * 179.79585 * 22 21 20 41 41 H 1.07999 * 120.06016 * 179.97438 * 28 23 22 42 42 H 1.07993 * 120.19888 * 180.25087 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2774 2.7464 0.0006 6 1 3.0962 1.6962 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0742 -1.2198 -0.1716 9 6 1.3186 -2.4265 0.2232 10 6 1.7905 -3.6237 -0.3480 11 6 1.1169 -4.8046 -0.1288 12 6 -0.0220 -4.8261 0.6567 13 6 -0.5092 -3.6456 1.2280 14 6 -1.7303 -3.6759 2.0609 15 8 -1.9123 -2.8193 2.9042 16 7 -2.6419 -4.6530 1.8853 17 6 -2.5165 -5.6230 0.7839 18 6 -3.9149 -5.8258 0.1833 19 8 -4.7956 -6.2857 1.2113 20 6 -4.8108 -5.6009 2.3850 21 6 -5.8976 -5.7243 3.2378 22 6 -5.9215 -5.0310 4.4333 23 6 -4.8605 -4.2195 4.7905 24 6 -4.8914 -3.4722 6.0989 25 9 -6.0853 -3.7570 6.7704 26 9 -3.8062 -3.8683 6.8879 27 9 -4.8118 -2.0973 5.8526 28 6 -3.7713 -4.0928 3.9484 29 6 -3.7445 -4.7815 2.7461 30 6 0.1592 -2.4448 1.0162 31 1 -0.4850 0.8400 0.0004 32 1 2.6814 -3.6159 -0.9583 33 1 1.4827 -5.7206 -0.5687 34 1 -0.5400 -5.7584 0.8264 35 1 -1.8402 -5.2335 0.0232 36 1 -2.1375 -6.5705 1.1669 37 1 -4.2817 -4.8803 -0.2159 38 1 -3.8659 -6.5671 -0.6143 39 1 -6.7273 -6.3599 2.9660 40 1 -6.7710 -5.1269 5.0934 41 1 -2.9428 -3.4587 4.2273 42 1 -0.2110 -1.5317 1.4586 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095415827.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:48 Heat of formation + Delta-G solvation = -145.233256 kcal Electronic energy + Delta-G solvation = -34478.629739 eV Core-core repulsion = 29360.758600 eV Total energy + Delta-G solvation = -5117.871138 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.103 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.09043 -47.63791 -47.51197 -41.47793 -39.20155 -37.99401 -37.22885 -35.45415 -33.85711 -31.81901 -31.32141 -30.03420 -29.70810 -28.55136 -26.10000 -25.69054 -24.01470 -23.70366 -22.54365 -21.22553 -20.68269 -19.56687 -18.57660 -18.39680 -18.26298 -18.04908 -17.60368 -16.68567 -16.44413 -15.96415 -15.62320 -15.17642 -15.13169 -14.81865 -14.52332 -14.44048 -14.06881 -13.99518 -13.96814 -13.82397 -13.76202 -13.70271 -13.61135 -13.41409 -12.98925 -12.88809 -12.80879 -12.58297 -11.99437 -11.90548 -11.67959 -11.37187 -11.34605 -11.25595 -11.21169 -10.68848 -10.58185 -10.25380 -10.14999 -9.82883 -9.38870 -9.18976 -8.74562 -8.02500 -7.76791 -7.64253 -6.90064 -4.58907 0.84099 1.12237 1.97246 2.60569 2.64297 2.73318 3.00193 3.01640 3.03723 3.08584 3.27196 3.59771 3.78957 3.82892 4.09188 4.31708 4.45585 4.49385 4.53216 4.77148 4.89227 5.01925 5.05753 5.13302 5.27332 5.35283 5.43420 5.56402 5.69172 5.80319 5.88764 6.02332 6.06310 6.14035 6.21585 6.50168 6.68338 6.79697 6.81022 7.05064 7.12089 7.17252 7.27826 7.50496 7.60651 7.78851 7.98055 8.32548 8.39527 8.64321 8.67079 10.04533 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.009744 B = 0.003009 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2872.929436 B = 9303.587846 C =11276.662730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.101 3.899 10 C -0.203 4.203 11 C -0.097 4.097 12 C -0.234 4.234 13 C -0.130 4.130 14 C 0.573 3.427 15 O -0.517 6.517 16 N -0.557 5.557 17 C 0.053 3.947 18 C 0.042 3.958 19 O -0.309 6.309 20 C 0.120 3.880 21 C -0.130 4.130 22 C -0.069 4.069 23 C -0.196 4.196 24 C 0.514 3.486 25 F -0.181 7.181 26 F -0.177 7.177 27 F -0.174 7.174 28 C -0.068 4.068 29 C 0.094 3.906 30 C -0.082 4.082 31 H 0.285 0.715 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.141 0.859 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.126 0.874 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.176 0.824 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.570 -10.419 3.103 15.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.098 3.902 10 C -0.223 4.223 11 C -0.115 4.115 12 C -0.253 4.253 13 C -0.134 4.134 14 C 0.368 3.632 15 O -0.393 6.393 16 N -0.282 5.282 17 C -0.069 4.069 18 C -0.034 4.034 19 O -0.223 6.223 20 C 0.072 3.928 21 C -0.149 4.149 22 C -0.088 4.088 23 C -0.198 4.198 24 C 0.460 3.540 25 F -0.162 7.162 26 F -0.158 7.158 27 F -0.155 7.155 28 C -0.088 4.088 29 C -0.001 4.001 30 C -0.102 4.102 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.159 0.841 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.144 0.856 39 H 0.162 0.838 40 H 0.160 0.840 41 H 0.193 0.807 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.876 -9.886 3.454 15.098 hybrid contribution 0.482 0.953 0.015 1.068 sum -10.393 -8.933 3.469 14.137 Atomic orbital electron populations 1.69713 1.07543 1.29916 1.34813 1.25952 0.94905 1.01598 0.92172 0.86237 0.79982 0.79804 0.80024 1.18901 1.20159 1.18673 1.19587 0.96075 0.90223 1.42812 0.89984 1.17599 0.91252 0.92625 0.88706 1.21219 1.02653 0.93414 1.05019 1.20480 0.95415 0.96812 0.98786 1.20879 1.01252 0.95983 1.07224 1.19263 0.95238 0.96234 1.02628 1.19174 0.82730 0.78267 0.83068 1.90568 1.76971 1.36902 1.34893 1.45764 1.22836 1.30947 1.28634 1.23486 0.98701 0.93365 0.91332 1.23536 0.88700 1.02186 0.88929 1.86025 1.62206 1.52539 1.21503 1.18729 0.92520 0.94417 0.87180 1.20284 0.97093 1.03306 0.94224 1.20682 0.97443 0.94440 0.96271 1.19753 0.99418 1.05077 0.95582 1.18161 0.73340 0.77671 0.84820 1.93136 1.47262 1.93413 1.82438 1.93216 1.55445 1.90619 1.76558 1.93240 1.95874 1.32109 1.94300 1.21513 0.98799 0.98016 0.90513 1.17848 0.88692 1.01421 0.92150 1.21648 0.96008 0.95580 0.96958 0.90350 0.88322 0.88521 0.87442 0.84120 0.89357 0.90717 0.85605 0.83837 0.84031 0.80724 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.01 10.86 55.55 0.60 -19.40 16 2 C 0.07 1.73 5.25 -17.34 -0.09 1.64 16 3 Si 0.92 18.14 29.57 -169.99 -5.03 13.11 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.46 -11.40 9.06 -37.73 -0.34 -11.74 16 8 H 0.08 1.94 7.87 -52.49 -0.41 1.52 16 9 C 0.10 2.49 5.54 -106.87 -0.59 1.90 16 10 C -0.20 -4.43 9.78 -38.81 -0.38 -4.81 16 11 C -0.10 -1.84 10.01 -39.73 -0.40 -2.24 16 12 C -0.23 -4.38 7.53 -38.91 -0.29 -4.67 16 13 C -0.13 -2.83 5.52 -105.04 -0.58 -3.41 16 14 C 0.57 11.90 7.40 -12.33 -0.09 11.81 16 15 O -0.52 -12.00 13.47 5.31 0.07 -11.93 16 16 N -0.56 -9.45 3.01 -113.39 -0.34 -9.79 16 17 C 0.05 0.68 4.72 -3.33 -0.02 0.67 16 18 C 0.04 0.45 7.18 37.43 0.27 0.72 16 19 O -0.31 -3.83 10.32 -19.41 -0.20 -4.03 16 20 C 0.12 1.65 6.52 -39.04 -0.25 1.39 16 21 C -0.13 -1.49 9.97 -39.42 -0.39 -1.89 16 22 C -0.07 -0.81 9.42 -39.58 -0.37 -1.18 16 23 C -0.20 -2.80 5.37 -104.60 -0.56 -3.37 16 24 C 0.51 7.24 3.32 36.01 0.12 7.35 16 25 F -0.18 -2.24 15.97 2.25 0.04 -2.21 16 26 F -0.18 -2.61 17.24 2.25 0.04 -2.57 16 27 F -0.17 -2.70 17.24 2.25 0.04 -2.67 16 28 C -0.07 -1.15 8.48 -39.44 -0.33 -1.48 16 29 C 0.09 1.53 6.33 -83.40 -0.53 1.00 16 30 C -0.08 -2.03 8.19 -38.44 -0.31 -2.35 16 31 H 0.29 6.66 8.30 -40.82 -0.34 6.32 16 32 H 0.10 2.00 8.06 -52.49 -0.42 1.58 16 33 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.11 1.65 4.73 -52.49 -0.25 1.40 16 35 H 0.14 1.89 4.91 -51.93 -0.25 1.64 16 36 H 0.09 1.00 7.53 -51.93 -0.39 0.61 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.14 1.28 7.14 -52.48 -0.37 0.90 16 41 H 0.18 3.39 5.17 -52.55 -0.27 3.12 16 42 H 0.13 3.65 6.03 -52.49 -0.32 3.33 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -27.97 360.73 -8.02 -35.99 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -3.52 Total: 8.73 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -5.15 Total: -10.66 kcal Atomic # 7 Polarization: -29.45 SS G_CDS: 0.26 Total: -29.19 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.13 Total: -15.97 kcal Atomic # 9 Polarization: -7.56 SS G_CDS: 0.11 Total: -7.45 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.97 -8.02 -35.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095415827.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.246 kcal (2) G-P(sol) polarization free energy of solvation -27.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds