Wall clock time and date at job start Tue Mar 31 2020 05:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00014 * 2 1 4 4 H 1.48507 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47312 * 299.99486 * 3 2 1 6 6 H 1.48500 * 109.47453 * 59.99836 * 3 2 1 7 7 C 1.37871 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00278 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00265 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47495 * 179.97438 * 9 7 2 11 11 C 1.39822 * 120.00057 * 84.99710 * 10 9 7 12 12 C 1.38876 * 120.04769 * 335.73435 * 11 10 9 13 13 C 1.38125 * 119.95038 * 180.22935 * 12 11 10 14 14 C 1.38474 * 120.04563 * 359.51199 * 13 12 11 15 15 F 1.35095 * 119.94583 * 180.23163 * 14 13 12 16 16 C 1.38465 * 120.09912 * 0.46637 * 14 13 12 17 17 C 1.38126 * 120.04764 * 359.78841 * 16 14 13 18 18 S 1.65603 * 120.00240 * 265.00180 * 10 9 7 19 19 O 1.42094 * 106.40168 * 225.80781 * 18 10 9 20 20 O 1.42105 * 106.39805 * 358.72441 * 18 10 9 21 21 C 1.76192 * 107.21840 * 112.26589 * 18 10 9 22 22 C 1.35600 * 120.30425 * 112.97680 * 21 18 10 23 23 C 1.40071 * 121.94411 * 179.97438 * 22 21 18 24 24 C 1.35595 * 121.94435 * 0.02562 * 23 22 21 25 25 C 1.40838 * 119.39082 * 359.97438 * 24 23 22 26 26 N 1.31017 * 138.56352 * 180.02562 * 25 24 23 27 27 O 1.21478 * 109.08535 * 179.34056 * 26 25 24 28 28 N 1.21470 * 116.28526 * 0.62294 * 27 26 25 29 29 C 1.31022 * 109.08869 * 359.47002 * 28 27 26 30 30 H 0.97006 * 119.99982 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47243 * 59.99435 * 9 7 2 32 32 H 1.09000 * 109.47169 * 300.00074 * 9 7 2 33 33 H 1.07995 * 120.02935 * 359.95077 * 12 11 10 34 34 H 1.07992 * 119.97579 * 179.74573 * 13 12 11 35 35 H 1.07999 * 119.97581 * 179.76519 * 16 14 13 36 36 H 1.08004 * 120.01920 * 179.97438 * 17 16 14 37 37 H 1.07991 * 119.02784 * 359.97438 * 22 21 18 38 38 H 1.08007 * 119.02272 * 180.02562 * 23 22 21 39 39 H 1.08005 * 120.30476 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.7375 -4.0754 1.2068 12 6 2.7970 -3.2333 2.3095 13 6 3.3298 -3.6911 3.4988 14 6 3.7951 -4.9918 3.5949 15 9 4.3116 -5.4389 4.7605 16 6 3.7363 -5.8333 2.4969 17 6 3.2091 -5.3780 1.3041 18 16 2.6460 -4.3233 -1.4281 19 8 2.5795 -5.7267 -1.2158 20 8 1.9183 -3.6565 -2.4505 21 6 4.3449 -3.9406 -1.6961 22 6 5.2812 -4.9207 -1.6590 23 6 6.6406 -4.6554 -1.8676 24 6 7.0970 -3.4033 -2.1180 25 6 6.1836 -2.3326 -2.1721 26 7 6.1982 -1.0384 -2.3752 27 8 5.0615 -0.6140 -2.3147 28 7 4.1941 -1.4310 -2.0789 29 6 4.7422 -2.6148 -1.9570 30 1 -0.4850 0.8401 -0.0004 31 1 0.6246 -2.5571 -0.8896 32 1 0.6240 -2.5567 0.8903 33 1 2.4312 -2.2199 2.2360 34 1 3.3801 -3.0354 4.3554 35 1 4.1033 -6.8462 2.5730 36 1 3.1639 -6.0346 0.4478 37 1 4.9696 -5.9359 -1.4627 38 1 7.3461 -5.4722 -1.8279 39 1 8.1512 -3.2287 -2.2746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095420518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:59 Heat of formation + Delta-G solvation = 74.590999 kcal Electronic energy + Delta-G solvation = -33422.243533 eV Core-core repulsion = 28764.204733 eV Total energy + Delta-G solvation = -4658.038800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.068 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -48.60221 -46.51655 -39.21297 -38.88286 -37.16001 -35.72026 -35.44056 -34.70519 -33.22051 -32.65647 -31.58297 -30.86652 -29.04288 -26.85928 -26.00772 -24.90594 -23.36327 -22.65341 -22.12459 -21.46625 -19.54093 -18.88264 -18.76296 -18.15020 -17.54479 -17.47483 -16.99874 -16.55616 -16.35174 -15.68876 -15.34666 -15.29846 -15.08696 -14.51717 -14.27605 -14.06436 -13.42973 -13.36911 -13.25492 -13.11660 -13.07600 -12.93435 -12.55932 -12.33429 -12.21672 -11.98854 -11.87290 -11.64295 -11.61570 -11.54060 -11.33818 -11.12976 -10.78201 -10.76960 -10.43787 -10.33485 -10.02823 -9.91927 -9.19146 -9.03941 -8.85498 -8.53538 -7.57663 -6.16401 -4.21603 -0.38540 0.46100 1.03488 1.46731 1.54172 1.81287 2.81412 3.05663 3.17371 3.26213 3.35815 3.39031 3.47180 3.70997 3.81266 3.93930 4.35562 4.41615 4.44983 4.58764 4.64086 4.83596 4.95669 4.97759 5.12566 5.17961 5.25204 5.31726 5.48734 5.64692 5.65361 5.68443 5.79653 6.07720 6.11015 6.27751 6.43906 6.63023 6.75784 6.98698 7.11278 7.18744 7.48590 7.78346 7.98166 8.57424 8.79202 9.44715 10.92151 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.007078 B = 0.005835 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3955.054852 B = 4797.506856 C = 6433.833740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.074 3.926 3 Si 0.889 3.111 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.285 1.285 7 C -0.530 4.530 8 H 0.065 0.935 9 C 0.236 3.764 10 N -0.916 5.916 11 C 0.174 3.826 12 C -0.102 4.102 13 C -0.130 4.130 14 C 0.056 3.944 15 F -0.150 7.150 16 C -0.124 4.124 17 C -0.182 4.182 18 S 2.684 3.316 19 O -0.959 6.959 20 O -0.920 6.920 21 C -0.617 4.617 22 C 0.033 3.967 23 C -0.118 4.118 24 C -0.010 4.010 25 C -0.001 4.001 26 N -0.347 5.347 27 O 0.386 5.614 28 N -0.280 5.280 29 C 0.062 3.938 30 H 0.265 0.735 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.161 0.839 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.153 0.847 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.752 -10.622 -0.180 16.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.211 1.211 7 C -0.569 4.569 8 H 0.083 0.917 9 C 0.117 3.883 10 N -0.742 5.742 11 C 0.076 3.924 12 C -0.124 4.124 13 C -0.150 4.150 14 C 0.035 3.965 15 F -0.129 7.129 16 C -0.144 4.144 17 C -0.204 4.204 18 S 2.774 3.226 19 O -0.949 6.949 20 O -0.910 6.910 21 C -0.703 4.703 22 C 0.010 3.990 23 C -0.140 4.140 24 C -0.030 4.030 25 C -0.154 4.154 26 N -0.068 5.068 27 O 0.143 5.857 28 N 0.005 4.995 29 C -0.093 4.093 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.179 0.821 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.190 0.810 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 11.759 -9.802 -0.970 15.340 hybrid contribution 1.398 0.549 0.563 1.604 sum 13.157 -9.253 -0.407 16.090 Atomic orbital electron populations 1.69921 1.06027 1.27274 1.49361 1.24811 0.94690 0.99085 0.94425 0.86564 0.80430 0.83568 0.77777 1.19386 1.20414 1.21124 1.21321 0.93419 0.89916 1.52262 0.91705 1.19645 0.86672 0.81562 1.00462 1.55615 1.52994 1.48479 1.17073 1.17727 0.95383 0.91950 0.87335 1.21367 0.98782 1.01450 0.90760 1.21045 1.00567 0.94226 0.99160 1.17694 1.02510 0.94052 0.82205 1.91440 1.85065 1.89738 1.46616 1.20807 1.02012 0.99852 0.91713 1.22096 1.02729 0.94678 1.00871 1.02524 0.73221 0.73485 0.73369 1.93418 1.86067 1.30123 1.85277 1.93650 1.68369 1.74630 1.54393 1.30032 1.27488 0.95636 1.17148 1.21100 0.92350 0.99223 0.86322 1.21108 0.95807 0.97110 1.00008 1.20213 0.98793 0.89205 0.94796 1.22901 0.95685 0.91537 1.05316 1.75189 1.03288 1.10623 1.17713 1.85500 1.07727 1.34813 1.57664 1.75918 1.12288 0.98555 1.12783 1.21712 0.90699 0.93345 1.03554 0.92500 0.92113 0.92952 0.82112 0.84880 0.84833 0.81009 0.82072 0.82890 0.83152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.52 13.29 55.43 0.74 -23.79 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -13.25 7.35 -34.44 -0.25 -13.51 16 8 H 0.06 1.60 6.40 -52.48 -0.34 1.26 16 9 C 0.24 5.57 4.65 -5.20 -0.02 5.54 16 10 N -0.92 -18.27 2.98 -59.79 -0.18 -18.45 16 11 C 0.17 3.11 6.26 -83.74 -0.52 2.59 16 12 C -0.10 -1.78 9.03 -39.39 -0.36 -2.14 16 13 C -0.13 -1.98 10.02 -39.54 -0.40 -2.38 16 14 C 0.06 0.82 7.30 -39.41 -0.29 0.53 16 15 F -0.15 -2.16 17.26 2.25 0.04 -2.12 16 16 C -0.12 -1.71 10.02 -39.54 -0.40 -2.11 16 17 C -0.18 -2.80 9.18 -39.39 -0.36 -3.16 16 18 S 2.68 50.21 5.29 -107.50 -0.57 49.64 16 19 O -0.96 -16.42 13.40 -57.17 -0.77 -17.19 16 20 O -0.92 -20.63 16.33 -57.17 -0.93 -21.56 16 21 C -0.62 -9.95 5.90 -39.54 -0.23 -10.18 16 22 C 0.03 0.38 9.45 -39.84 -0.38 0.00 16 23 C -0.12 -1.02 9.90 -39.84 -0.39 -1.42 16 24 C -0.01 -0.10 10.08 -39.54 -0.40 -0.50 16 25 C 0.00 -0.01 7.76 -83.03 -0.64 -0.65 16 26 N -0.35 -5.71 12.29 31.88 0.39 -5.32 16 27 O 0.39 7.18 11.67 26.94 0.31 7.49 16 28 N -0.28 -5.75 10.29 31.88 0.33 -5.42 16 29 C 0.06 1.12 7.41 -83.03 -0.62 0.51 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 31 H 0.06 1.57 7.00 -51.93 -0.36 1.21 16 32 H 0.05 1.26 7.71 -51.93 -0.40 0.86 16 33 H 0.16 3.11 6.16 -52.49 -0.32 2.78 16 34 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.17 2.52 4.63 -52.59 -0.24 2.28 16 37 H 0.16 1.41 7.24 -52.49 -0.38 1.03 16 38 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.15 1.02 8.06 -52.48 -0.42 0.59 16 LS Contribution 353.10 15.07 5.32 5.32 Total: -1.00 -30.98 353.10 -8.57 -39.54 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -2.87 Total: 1.16 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -5.36 Total: -25.04 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 1.28 Total: -52.98 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -1.39 Total: -31.26 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 50.21 SS G_CDS: -0.57 Total: 49.64 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.98 -8.57 -39.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095420518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.135 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds