Wall clock time and date at job start Tue Mar 31 2020 05:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 N 1.46498 * 109.47155 * 120.00517 * 2 1 3 5 5 C 1.36940 * 119.99929 * 293.55571 * 4 2 1 6 6 H 1.07998 * 120.00100 * 320.10864 * 5 4 2 7 7 C 1.38992 * 119.99888 * 140.10816 * 5 4 2 8 8 N 1.31405 * 119.99836 * 337.92062 * 7 5 4 9 9 Si 1.86801 * 119.99883 * 157.92287 * 7 5 4 10 10 H 1.48502 * 109.47350 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47203 * 119.99816 * 9 7 5 12 12 H 1.48500 * 109.47260 * 239.99824 * 9 7 5 13 13 C 1.34780 * 119.99676 * 113.55133 * 4 2 1 14 14 O 1.21663 * 119.99571 * 182.14166 * 13 4 2 15 15 C 1.47211 * 120.00521 * 2.15515 * 13 4 2 16 16 C 1.36536 * 126.20021 * 172.91239 * 15 13 4 17 17 N 1.36147 * 106.75100 * 180.02562 * 16 15 13 18 18 C 1.40230 * 126.21857 * 179.97438 * 17 16 15 19 19 C 1.38828 * 120.05792 * 179.97438 * 18 17 16 20 20 C 1.38106 * 119.94303 * 180.02562 * 19 18 17 21 21 C 1.38359 * 120.05980 * 0.02562 * 20 19 18 22 22 Br 1.89098 * 119.94804 * 179.97438 * 21 20 19 23 23 C 1.38360 * 120.10733 * 0.26847 * 21 20 19 24 24 C 1.38119 * 120.05594 * 359.45343 * 23 21 20 25 25 C 1.36122 * 107.57029 * 0.25604 * 17 16 15 26 26 N 1.30164 * 109.02159 * 359.56022 * 25 17 16 27 27 H 1.09001 * 109.46711 * 305.19366 * 1 2 3 28 28 H 1.09003 * 109.47057 * 65.18865 * 1 2 3 29 29 H 1.08998 * 109.47750 * 185.19317 * 1 2 3 30 30 H 1.09005 * 109.46545 * 240.00352 * 2 1 3 31 31 H 1.08993 * 109.47275 * 182.11114 * 3 2 1 32 32 H 1.09000 * 109.47445 * 302.11958 * 3 2 1 33 33 H 1.09004 * 109.46692 * 62.11871 * 3 2 1 34 34 H 0.97001 * 119.99708 * 180.02562 * 8 7 5 35 35 H 1.07997 * 126.62796 * 0.02562 * 16 15 13 36 36 H 1.08004 * 120.02650 * 0.04407 * 19 18 17 37 37 H 1.08003 * 119.97300 * 179.97438 * 20 19 18 38 38 H 1.08008 * 119.97227 * 179.70938 * 23 21 20 39 39 H 1.08007 * 120.02648 * 180.27294 * 24 23 21 40 40 H 1.08001 * 125.48779 * 179.71606 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.7997 -0.1511 2.4356 6 1 1.8896 0.9149 2.5840 7 6 1.4622 -0.9753 3.5026 8 7 0.9347 -2.1577 3.2782 9 14 1.7585 -0.4021 5.2557 10 1 2.3583 0.9563 5.2376 11 1 0.4676 -0.3639 5.9888 12 1 2.6855 -1.3431 5.9342 13 6 2.6827 -1.8573 1.0765 14 8 3.0541 -2.4505 2.0717 15 6 2.9592 -2.4136 -0.2581 16 6 3.7323 -3.5050 -0.5325 17 7 3.7181 -3.6661 -1.8844 18 6 4.3824 -4.6679 -2.6065 19 6 4.2789 -4.7125 -3.9901 20 6 4.9337 -5.7006 -4.6989 21 6 5.6919 -6.6458 -4.0311 22 35 6.5866 -7.9977 -5.0046 23 6 5.7917 -6.6071 -2.6516 24 6 5.1434 -5.6176 -1.9387 25 6 2.9470 -2.6742 -2.4083 26 7 2.4918 -1.9340 -1.4392 27 1 -0.3633 0.5923 0.8398 28 1 -0.3633 0.4313 -0.9328 29 1 -0.3634 -1.0234 0.0930 30 1 1.8933 -0.5138 -0.8901 31 1 3.1293 1.4426 -0.0379 32 1 1.6461 1.9672 -0.8704 33 1 1.7081 1.9452 0.9084 34 1 0.6988 -2.7328 4.0230 35 1 4.2543 -4.1215 0.1843 36 1 3.6870 -3.9750 -4.5119 37 1 4.8532 -5.7360 -5.7753 38 1 6.3804 -7.3489 -2.1322 39 1 5.2252 -5.5853 -0.8622 40 1 2.7434 -2.5268 -3.4587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095439870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:28 Heat of formation + Delta-G solvation = 91.870112 kcal Electronic energy + Delta-G solvation = -25687.510358 eV Core-core repulsion = 21937.209749 eV Total energy + Delta-G solvation = -3750.300609 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -42.22701 -39.52002 -37.99990 -34.93621 -34.43886 -32.21750 -31.80492 -31.59953 -29.79142 -29.35154 -28.58394 -26.20895 -25.29344 -23.77137 -23.32070 -21.76185 -20.86217 -20.04028 -19.37705 -18.46706 -16.58793 -15.93775 -15.64820 -15.52870 -15.27029 -15.17822 -14.59404 -14.29767 -14.07873 -13.67825 -13.60934 -13.30212 -13.09530 -12.96902 -12.65197 -12.18840 -11.85550 -11.72691 -11.57760 -11.44749 -11.25335 -11.00755 -10.80385 -10.68317 -10.68270 -10.45354 -10.24221 -10.16588 -10.00228 -9.58900 -8.73829 -8.71575 -8.58926 -8.12783 -8.01985 -6.96512 -6.01766 -3.68242 0.36372 0.77720 1.20944 2.15038 2.57128 2.92565 3.27915 3.37823 3.46851 3.48145 4.16626 4.30819 4.37582 4.58964 4.69409 4.75576 4.82630 4.94844 5.09830 5.14463 5.37853 5.44875 5.52351 5.57413 5.69598 5.78204 5.99407 6.06179 6.14157 6.28147 6.29823 6.45948 6.60981 6.71146 6.80082 6.83367 7.00154 7.18751 7.32366 7.61401 7.73818 8.12854 8.38996 9.16694 9.32818 9.80244 10.45753 11.05366 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.002009 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.250840 B =13933.243461 C =14960.460905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.074 3.926 3 C -0.148 4.148 4 N -0.420 5.420 5 C -0.338 4.338 6 H 0.083 0.917 7 C 0.069 3.931 8 N -0.815 5.815 9 Si 0.904 3.096 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.281 1.281 13 C 0.527 3.473 14 O -0.541 6.541 15 C 0.009 3.991 16 C -0.010 4.010 17 N -0.418 5.418 18 C 0.168 3.832 19 C -0.135 4.135 20 C -0.061 4.061 21 C -0.109 4.109 22 Br -0.049 7.049 23 C -0.060 4.060 24 C -0.131 4.131 25 C 0.179 3.821 26 N -0.450 5.450 27 H 0.050 0.950 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.146 0.854 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.262 0.738 35 H 0.186 0.814 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.641 -10.389 -20.702 25.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.030 4.030 3 C -0.206 4.206 4 N -0.139 5.139 5 C -0.465 4.465 6 H 0.100 0.900 7 C -0.142 4.142 8 N -0.448 5.448 9 Si 0.732 3.268 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.207 1.207 13 C 0.314 3.686 14 O -0.420 6.420 15 C -0.118 4.118 16 C -0.141 4.141 17 N -0.099 5.099 18 C 0.073 3.927 19 C -0.155 4.155 20 C -0.082 4.082 21 C -0.190 4.190 22 Br 0.037 6.963 23 C -0.080 4.080 24 C -0.152 4.152 25 C -0.101 4.101 26 N -0.169 5.169 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.162 0.838 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.203 0.797 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 9.564 -10.666 -20.511 25.019 hybrid contribution 0.215 -0.164 1.147 1.178 sum 9.779 -10.830 -19.365 24.247 Atomic orbital electron populations 1.21856 0.96775 1.01381 0.99327 1.22345 0.94004 0.93526 0.93150 1.22002 1.00115 0.97843 1.00638 1.43188 1.45869 1.19640 1.05186 1.19038 1.49427 0.93340 0.84696 0.89969 1.25155 0.94123 0.95477 0.99445 1.69939 1.33433 1.09417 1.32031 0.86277 0.77703 0.78806 0.84042 1.19622 1.21406 1.20742 1.16574 0.83271 0.84551 0.84234 1.90633 1.54806 1.59923 1.36622 1.21737 1.00155 0.96032 0.93866 1.22608 1.06603 1.02192 0.82696 1.43026 1.37619 1.22363 1.06913 1.18002 0.94098 0.89228 0.91327 1.20830 1.02626 1.00744 0.91341 1.20939 0.94361 0.92394 1.00470 1.21793 1.04085 0.98258 0.94822 1.96740 1.76662 1.49368 1.73575 1.20996 0.97597 0.97598 0.91825 1.21005 0.98351 0.94561 1.01272 1.25472 0.96086 0.87884 1.00636 1.70285 1.22599 1.25427 0.98568 0.93061 0.94383 0.93309 0.83825 0.93829 0.93699 0.92658 0.92821 0.79733 0.84027 0.84059 0.84037 0.83831 0.77551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.19 37.16 0.34 -2.51 16 2 C 0.07 1.62 3.08 -67.93 -0.21 1.42 16 3 C -0.15 -2.86 9.08 37.16 0.34 -2.53 16 4 N -0.42 -11.07 2.47 -109.01 -0.27 -11.34 16 5 C -0.34 -9.50 8.25 -14.99 -0.12 -9.62 16 6 H 0.08 2.24 6.65 -52.49 -0.35 1.89 16 7 C 0.07 1.99 4.26 -17.45 -0.07 1.92 16 8 N -0.81 -24.66 11.54 55.50 0.64 -24.02 16 9 Si 0.90 22.28 29.61 -169.99 -5.03 17.24 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 13 C 0.53 14.17 7.03 -12.61 -0.09 14.08 16 14 O -0.54 -16.32 14.24 5.22 0.07 -16.24 16 15 C 0.01 0.19 6.71 -83.09 -0.56 -0.37 16 16 C -0.01 -0.19 10.58 -16.25 -0.17 -0.36 16 17 N -0.42 -5.84 2.97 -61.87 -0.18 -6.03 16 18 C 0.17 1.85 6.63 -83.58 -0.55 1.29 16 19 C -0.13 -1.13 9.46 -39.41 -0.37 -1.50 16 20 C -0.06 -0.46 9.78 -39.59 -0.39 -0.85 16 21 C -0.11 -0.91 6.22 -39.49 -0.25 -1.16 16 22 Br -0.05 -0.37 33.70 -68.01 -2.29 -2.67 16 23 C -0.06 -0.51 9.78 -39.58 -0.39 -0.90 16 24 C -0.13 -1.32 9.46 -39.41 -0.37 -1.70 16 25 C 0.18 2.49 11.88 -89.66 -1.06 1.43 16 26 N -0.45 -8.33 7.57 -10.97 -0.08 -8.41 16 27 H 0.05 1.13 7.96 -51.93 -0.41 0.71 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.15 3.02 3.54 -85.61 -0.30 2.71 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 1.12 6.74 -51.93 -0.35 0.77 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.19 3.05 7.11 -52.49 -0.37 2.68 16 36 H 0.14 0.86 6.74 -52.48 -0.35 0.51 16 37 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 38 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 39 H 0.14 1.40 6.78 -52.48 -0.36 1.05 16 40 H 0.21 1.81 7.03 -52.49 -0.37 1.44 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -34.92 354.33 -10.28 -45.20 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.54 Total: 2.28 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -3.93 Total: -1.37 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.11 Total: -49.79 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.07 Total: -16.24 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.03 Total: 17.24 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.29 Total: -2.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.92 -10.28 -45.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095439870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.070 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds