Wall clock time and date at job start Tue Mar 31 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30483 * 125.96589 * 2 1 4 4 N 1.39934 * 108.91193 * 179.97438 * 3 2 1 5 5 C 1.40174 * 125.76757 * 179.97438 * 4 3 2 6 6 C 1.38856 * 120.05472 * 179.74534 * 5 4 3 7 7 C 1.38107 * 119.93796 * 179.77142 * 6 5 4 8 8 C 1.38362 * 120.05883 * 0.50616 * 7 6 5 9 9 Br 1.89098 * 119.94143 * 179.76653 * 8 7 6 10 10 C 1.38364 * 120.11571 * 359.74702 * 8 7 6 11 11 C 1.38104 * 120.05805 * 0.02562 * 10 8 7 12 12 C 1.34526 * 108.46001 * 359.97438 * 4 3 2 13 13 C 1.38073 * 107.38217 * 0.02562 * 12 4 3 14 14 C 1.47410 * 126.41232 * 179.97438 * 13 12 4 15 15 O 1.21609 * 119.99799 * 146.68949 * 14 13 12 16 16 N 1.34780 * 120.00023 * 326.68948 * 14 13 12 17 17 C 1.46497 * 120.00148 * 5.11687 * 16 14 13 18 18 C 1.46502 * 119.99641 * 185.11744 * 16 14 13 19 19 C 1.50697 * 109.46890 * 90.00449 * 18 16 14 20 20 H 1.07996 * 120.00409 * 359.97438 * 19 18 16 21 21 C 1.37877 * 119.99865 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00088 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00259 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46695 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46871 * 119.99706 * 23 21 19 26 26 H 1.48492 * 109.47204 * 240.00226 * 23 21 19 27 27 H 1.09001 * 109.47314 * 90.02283 * 1 2 3 28 28 H 1.09001 * 109.47335 * 210.02879 * 1 2 3 29 29 H 1.09003 * 109.46928 * 330.02396 * 1 2 3 30 30 H 1.08002 * 120.02411 * 0.02562 * 6 5 4 31 31 H 1.08002 * 119.96551 * 180.23442 * 7 6 5 32 32 H 1.07998 * 119.96945 * 179.97438 * 10 8 7 33 33 H 1.08002 * 120.02872 * 180.02562 * 11 10 8 34 34 H 1.08001 * 126.31294 * 180.02562 * 12 4 3 35 35 H 1.09007 * 109.47102 * 96.11525 * 17 16 14 36 36 H 1.08993 * 109.47104 * 216.11664 * 17 16 14 37 37 H 1.09004 * 109.47299 * 336.12255 * 17 16 14 38 38 H 1.09001 * 109.46896 * 210.00128 * 18 16 14 39 39 H 1.09000 * 109.47328 * 330.00108 * 18 16 14 40 40 H 0.96998 * 120.00389 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0561 0.0000 4 7 3.6112 0.6457 0.0006 5 6 4.7280 1.4928 0.0003 6 6 6.0084 0.9554 0.0063 7 6 7.1070 1.7922 0.0012 8 6 6.9328 3.1648 0.0006 9 35 8.4395 4.3075 0.0003 10 6 5.6580 3.7028 0.0000 11 6 4.5560 2.8705 0.0003 12 6 3.6442 -0.6992 0.0015 13 6 2.3370 -1.1438 0.0009 14 6 1.8907 -2.5488 0.0011 15 8 0.8675 -2.8616 0.5790 16 7 2.6167 -3.4865 -0.6393 17 6 3.9052 -3.1320 -1.2395 18 6 2.1172 -4.8604 -0.7352 19 6 1.2897 -5.0079 -1.9859 20 1 1.1495 -4.1628 -2.6435 21 6 0.7116 -6.2220 -2.2909 22 7 0.8819 -7.2511 -1.4899 23 14 -0.3148 -6.4047 -3.8410 24 1 -0.3535 -5.1086 -4.5646 25 1 0.2891 -7.4423 -4.7149 26 1 -1.6962 -6.8083 -3.4752 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 6.1448 -0.1159 0.0108 31 1 8.1031 1.3747 0.0020 32 1 5.5247 4.7745 0.0000 33 1 3.5611 3.2909 -0.0006 34 1 4.5299 -1.3172 0.0025 35 1 4.7093 -3.3800 -0.5466 36 1 4.0397 -3.6891 -2.1666 37 1 3.9253 -2.0630 -1.4517 38 1 2.9594 -5.5514 -0.7731 39 1 1.5020 -5.0850 0.1362 40 1 0.4755 -8.1053 -1.7046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095448596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:56 Heat of formation + Delta-G solvation = 84.977084 kcal Electronic energy + Delta-G solvation = -25121.928248 eV Core-core repulsion = 21371.328735 eV Total energy + Delta-G solvation = -3750.599513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89616 -39.62817 -38.46021 -35.02241 -34.41477 -32.75191 -32.04616 -31.75713 -30.63209 -29.63060 -27.77330 -27.24159 -26.06680 -24.13576 -23.20790 -22.64807 -21.20932 -20.15037 -19.19411 -17.84971 -16.55855 -16.42882 -16.24855 -15.74747 -15.52722 -15.17295 -15.06189 -14.42180 -14.25080 -14.13189 -14.02554 -13.73215 -13.00102 -12.88328 -12.86148 -12.30700 -12.26893 -12.19030 -12.10378 -11.85571 -11.61822 -11.35689 -11.25613 -10.91605 -10.85642 -10.72560 -10.59722 -10.17733 -9.98507 -9.65564 -9.64214 -9.19274 -8.99960 -8.45855 -8.25183 -7.68144 -6.06476 -4.11341 0.20351 0.72557 1.15339 1.69910 2.02907 2.27835 3.14250 3.28573 3.36321 3.40013 3.67605 3.94020 4.10603 4.25377 4.40337 4.43136 4.47694 4.67512 4.81159 4.94305 5.12333 5.25437 5.32547 5.38761 5.42745 5.48967 5.55745 5.63889 5.67212 5.77349 5.79751 5.99925 6.03860 6.09311 6.13746 6.54739 6.79390 7.03098 7.41601 7.45686 7.50512 7.90176 8.20506 8.36200 8.87539 9.05601 9.53991 11.01552 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.001864 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.719238 B =15020.743746 C =15800.513765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.142 3.858 3 N -0.299 5.299 4 N -0.323 5.323 5 C 0.186 3.814 6 C -0.139 4.139 7 C -0.060 4.060 8 C -0.108 4.108 9 Br -0.047 7.047 10 C -0.064 4.064 11 C -0.115 4.115 12 C 0.081 3.919 13 C -0.247 4.247 14 C 0.580 3.420 15 O -0.535 6.535 16 N -0.595 5.595 17 C 0.070 3.930 18 C 0.245 3.755 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.282 1.282 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.192 0.808 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.048 0.952 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.749 24.056 3.219 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.026 4.026 3 N -0.118 5.118 4 N -0.096 5.096 5 C 0.092 3.908 6 C -0.161 4.161 7 C -0.080 4.080 8 C -0.188 4.188 9 Br 0.038 6.962 10 C -0.085 4.085 11 C -0.136 4.136 12 C -0.063 4.063 13 C -0.261 4.261 14 C 0.366 3.634 15 O -0.413 6.413 16 N -0.326 5.326 17 C -0.075 4.075 18 C 0.127 3.873 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.725 3.275 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.208 1.208 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.208 0.792 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 16.804 25.367 3.540 30.634 hybrid contribution -0.659 -1.396 -0.996 1.837 sum 16.146 23.972 2.544 29.014 Atomic orbital electron populations 1.20436 0.85167 1.04713 1.03851 1.22642 0.97495 0.88604 0.93863 1.77181 0.84841 1.22534 1.27252 1.45508 1.04664 1.04019 1.55417 1.17685 0.83984 0.89919 0.99177 1.20867 0.89703 1.01093 1.04435 1.20917 0.99319 0.90953 0.96808 1.21819 0.92776 0.94232 1.09986 1.96748 1.37755 1.63951 1.97734 1.21020 0.89889 1.00637 0.96916 1.20926 1.00439 0.90642 1.01598 1.23467 0.99679 0.83979 0.99166 1.20747 0.91677 0.96079 1.17588 1.17112 0.83874 0.82817 0.79557 1.90729 1.24799 1.81099 1.44674 1.48010 1.19422 1.12210 1.52936 1.22016 0.85726 1.00707 0.99014 1.19334 0.94988 0.74637 0.98375 1.21463 1.31524 0.96294 1.07259 0.92369 1.24936 0.96336 0.95689 0.97132 1.69940 1.44732 1.01572 1.37043 0.86447 0.80154 0.78013 0.82850 1.19795 1.20977 1.20825 0.89917 0.87899 0.90738 0.84067 0.83841 0.84050 0.83390 0.79183 0.93504 0.90711 0.91796 0.94863 0.93423 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.24 36.01 0.37 -0.82 16 2 C 0.14 2.29 7.26 -81.99 -0.59 1.70 16 3 N -0.30 -4.47 11.77 33.91 0.40 -4.07 16 4 N -0.32 -4.25 3.77 -10.20 -0.04 -4.28 16 5 C 0.19 1.97 6.68 -83.59 -0.56 1.41 16 6 C -0.14 -1.14 9.45 -39.40 -0.37 -1.52 16 7 C -0.06 -0.43 9.78 -39.58 -0.39 -0.82 16 8 C -0.11 -0.84 6.23 -39.49 -0.25 -1.08 16 9 Br -0.05 -0.34 33.70 -68.01 -2.29 -2.63 16 10 C -0.06 -0.50 9.78 -39.58 -0.39 -0.89 16 11 C -0.12 -1.10 9.65 -39.41 -0.38 -1.48 16 12 C 0.08 1.08 8.37 -16.43 -0.14 0.94 16 13 C -0.25 -4.20 5.55 -105.05 -0.58 -4.78 16 14 C 0.58 12.25 7.51 -12.52 -0.09 12.15 16 15 O -0.54 -13.24 15.01 5.27 0.08 -13.16 16 16 N -0.59 -12.44 2.86 -184.24 -0.53 -12.97 16 17 C 0.07 1.06 9.13 59.85 0.55 1.60 16 18 C 0.25 6.30 5.23 -5.19 -0.03 6.27 16 19 C -0.53 -14.68 9.39 -34.44 -0.32 -15.01 16 20 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 23 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.10 1.67 6.60 -51.93 -0.34 1.33 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.14 0.88 6.71 -52.49 -0.35 0.53 16 31 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.15 1.42 7.68 -52.49 -0.40 1.02 16 34 H 0.19 1.88 5.11 -52.49 -0.27 1.62 16 35 H 0.05 0.57 7.93 -51.93 -0.41 0.16 16 36 H 0.07 1.18 8.12 -51.93 -0.42 0.75 16 37 H 0.06 0.84 4.65 -51.93 -0.24 0.60 16 38 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 39 H 0.05 1.38 7.36 -51.93 -0.38 0.99 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -33.55 361.68 -8.96 -42.51 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.48 Total: -1.29 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.27 Total: -0.69 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.57 Total: -46.77 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.08 Total: -13.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.29 Total: -2.63 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.55 -8.96 -42.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095448596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.492 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds