Wall clock time and date at job start Tue Mar 31 2020 05:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30483 * 125.96589 * 2 1 4 4 N 1.39934 * 108.91193 * 179.97438 * 3 2 1 5 5 C 1.40174 * 125.76757 * 179.97438 * 4 3 2 6 6 C 1.38856 * 120.05472 * 179.74534 * 5 4 3 7 7 C 1.38107 * 119.93796 * 179.77142 * 6 5 4 8 8 C 1.38362 * 120.05883 * 0.50616 * 7 6 5 9 9 Br 1.89098 * 119.94143 * 179.76653 * 8 7 6 10 10 C 1.38364 * 120.11571 * 359.74702 * 8 7 6 11 11 C 1.38104 * 120.05805 * 0.02562 * 10 8 7 12 12 C 1.34526 * 108.46001 * 359.97438 * 4 3 2 13 13 C 1.38073 * 107.38217 * 0.02562 * 12 4 3 14 14 C 1.47410 * 126.41232 * 179.97438 * 13 12 4 15 15 O 1.21609 * 119.99799 * 146.68949 * 14 13 12 16 16 N 1.34780 * 120.00023 * 326.68948 * 14 13 12 17 17 C 1.46497 * 120.00148 * 5.11687 * 16 14 13 18 18 C 1.46502 * 119.99641 * 185.11744 * 16 14 13 19 19 C 1.50697 * 109.46890 * 90.00449 * 18 16 14 20 20 H 1.07996 * 120.00409 * 359.97438 * 19 18 16 21 21 C 1.37877 * 119.99865 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00088 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 120.00259 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46695 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46871 * 119.99706 * 23 21 19 26 26 H 1.48492 * 109.47204 * 240.00226 * 23 21 19 27 27 H 1.09001 * 109.47314 * 90.02283 * 1 2 3 28 28 H 1.09001 * 109.47335 * 210.02879 * 1 2 3 29 29 H 1.09003 * 109.46928 * 330.02396 * 1 2 3 30 30 H 1.08002 * 120.02411 * 0.02562 * 6 5 4 31 31 H 1.08002 * 119.96551 * 180.23442 * 7 6 5 32 32 H 1.07998 * 119.96945 * 179.97438 * 10 8 7 33 33 H 1.08002 * 120.02872 * 180.02562 * 11 10 8 34 34 H 1.08001 * 126.31294 * 180.02562 * 12 4 3 35 35 H 1.09007 * 109.47102 * 96.11525 * 17 16 14 36 36 H 1.08993 * 109.47104 * 216.11664 * 17 16 14 37 37 H 1.09004 * 109.47299 * 336.12255 * 17 16 14 38 38 H 1.09001 * 109.46896 * 210.00128 * 18 16 14 39 39 H 1.09000 * 109.47328 * 330.00108 * 18 16 14 40 40 H 0.96998 * 120.00389 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2733 1.0561 0.0000 4 7 3.6112 0.6457 0.0006 5 6 4.7280 1.4928 0.0003 6 6 6.0084 0.9554 0.0063 7 6 7.1070 1.7922 0.0012 8 6 6.9328 3.1648 0.0006 9 35 8.4395 4.3075 0.0003 10 6 5.6580 3.7028 0.0000 11 6 4.5560 2.8705 0.0003 12 6 3.6442 -0.6992 0.0015 13 6 2.3370 -1.1438 0.0009 14 6 1.8907 -2.5488 0.0011 15 8 0.8675 -2.8616 0.5790 16 7 2.6167 -3.4865 -0.6393 17 6 3.9052 -3.1320 -1.2395 18 6 2.1172 -4.8604 -0.7352 19 6 1.2897 -5.0079 -1.9859 20 1 1.1495 -4.1628 -2.6435 21 6 0.7116 -6.2220 -2.2909 22 7 0.8819 -7.2511 -1.4899 23 14 -0.3148 -6.4047 -3.8410 24 1 -0.3535 -5.1086 -4.5646 25 1 0.2891 -7.4423 -4.7149 26 1 -1.6962 -6.8083 -3.4752 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3633 0.8902 0.5135 30 1 6.1448 -0.1159 0.0108 31 1 8.1031 1.3747 0.0020 32 1 5.5247 4.7745 0.0000 33 1 3.5611 3.2909 -0.0006 34 1 4.5299 -1.3172 0.0025 35 1 4.7093 -3.3800 -0.5466 36 1 4.0397 -3.6891 -2.1666 37 1 3.9253 -2.0630 -1.4517 38 1 2.9594 -5.5514 -0.7731 39 1 1.5020 -5.0850 0.1362 40 1 0.4755 -8.1053 -1.7046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095448596.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:55 Heat of formation + Delta-G solvation = 65.325553 kcal Electronic energy + Delta-G solvation = -25122.780403 eV Core-core repulsion = 21371.328735 eV Total energy + Delta-G solvation = -3751.451667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.98078 -40.54716 -39.86067 -36.66239 -35.40740 -34.78075 -32.87675 -32.46934 -31.82736 -30.51576 -29.49047 -28.30775 -27.50251 -25.56340 -24.29369 -23.72497 -22.21672 -21.44793 -20.29146 -18.98954 -18.65569 -17.72729 -17.21888 -16.89603 -16.78336 -16.34362 -16.04424 -15.96959 -15.72553 -15.15110 -14.66709 -14.59699 -14.49888 -14.24736 -14.03466 -13.83434 -13.65068 -13.39947 -13.28647 -12.97066 -12.87558 -12.74601 -12.55018 -12.51157 -12.19533 -12.09356 -11.94105 -11.67329 -11.30016 -10.87604 -10.75491 -10.62865 -10.25162 -10.17817 -9.45268 -9.14308 -8.20580 -6.34917 -0.59000 0.11622 0.54613 0.71358 1.02902 1.07075 1.37872 1.40415 1.51959 2.12362 2.40656 2.46172 2.52833 3.08584 3.10817 3.43719 3.62793 3.73557 3.86145 3.98678 4.06950 4.22080 4.29174 4.34869 4.40579 4.64594 4.67485 4.72732 4.76004 4.83502 4.88381 4.92095 5.02376 5.05410 5.11348 5.26743 5.39860 5.42629 5.57580 5.84331 5.89376 6.08093 6.33341 6.71833 6.77417 7.29256 7.46847 8.86458 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.018842 B = 0.001864 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.719238 B =15020.743746 C =15800.513765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.127 3.873 3 N -0.306 5.306 4 N -0.314 5.314 5 C 0.151 3.849 6 C -0.129 4.129 7 C -0.058 4.058 8 C -0.107 4.107 9 Br -0.039 7.039 10 C -0.065 4.065 11 C -0.120 4.120 12 C 0.110 3.890 13 C -0.285 4.285 14 C 0.577 3.423 15 O -0.588 6.588 16 N -0.602 5.602 17 C 0.064 3.936 18 C 0.260 3.740 19 C -0.541 4.541 20 H 0.051 0.949 21 C 0.009 3.991 22 N -0.926 5.926 23 Si 0.965 3.035 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.281 1.281 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.166 0.834 31 H 0.169 0.831 32 H 0.158 0.842 33 H 0.141 0.859 34 H 0.229 0.771 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.030 0.970 39 H 0.003 0.997 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.463 25.798 2.117 32.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 N -0.126 5.126 4 N -0.086 5.086 5 C 0.059 3.941 6 C -0.150 4.150 7 C -0.078 4.078 8 C -0.187 4.187 9 Br 0.047 6.953 10 C -0.085 4.085 11 C -0.140 4.140 12 C -0.036 4.036 13 C -0.299 4.299 14 C 0.366 3.634 15 O -0.470 6.470 16 N -0.332 5.332 17 C -0.078 4.078 18 C 0.139 3.861 19 C -0.579 4.579 20 H 0.069 0.931 21 C -0.190 4.190 22 N -0.566 5.566 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.194 1.194 26 H -0.207 1.207 27 H 0.106 0.894 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.183 0.817 31 H 0.186 0.814 32 H 0.176 0.824 33 H 0.159 0.841 34 H 0.245 0.755 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.048 0.952 39 H 0.021 0.979 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 19.581 27.173 2.422 33.580 hybrid contribution -1.289 -1.765 -0.603 2.267 sum 18.292 25.407 1.819 31.360 Atomic orbital electron populations 1.20383 0.84944 1.04448 1.04080 1.22793 0.98118 0.88688 0.94456 1.77140 0.85776 1.22133 1.27559 1.45667 1.04735 1.04334 1.53820 1.18036 0.83924 0.90078 1.02079 1.21163 0.88623 1.02525 1.02716 1.21233 1.00208 0.90602 0.95742 1.22050 0.93009 0.94883 1.08791 1.96781 1.37109 1.63808 1.97627 1.21183 0.89505 1.01367 0.96424 1.20971 1.00751 0.90660 1.01642 1.23825 0.99335 0.84288 0.96120 1.20332 0.93706 0.93731 1.22163 1.17649 0.83045 0.84326 0.78395 1.90685 1.27175 1.82247 1.46881 1.47972 1.21424 1.10463 1.53377 1.22337 0.83859 1.02192 0.99442 1.18804 0.94012 0.77519 0.95739 1.21703 1.32157 0.96237 1.07842 0.93065 1.25816 0.97415 0.95352 1.00406 1.70048 1.45657 1.02117 1.38803 0.85398 0.78259 0.78340 0.78999 1.19295 1.19427 1.20737 0.89449 0.90574 0.88460 0.81674 0.81385 0.82426 0.84105 0.75466 0.89694 0.91284 0.89307 0.95234 0.97872 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.39 10.24 71.24 0.73 -1.66 16 2 C 0.13 4.13 7.26 43.52 0.32 4.45 16 3 N -0.31 -8.92 11.77 -46.64 -0.55 -9.47 16 4 N -0.31 -7.60 3.77 -186.19 -0.70 -8.30 16 5 C 0.15 2.79 6.68 38.10 0.25 3.05 16 6 C -0.13 -1.61 9.45 22.39 0.21 -1.39 16 7 C -0.06 -0.60 9.78 22.27 0.22 -0.39 16 8 C -0.11 -1.32 6.23 22.33 0.14 -1.18 16 9 Br -0.04 -0.44 33.70 -20.37 -0.69 -1.13 16 10 C -0.06 -0.84 9.78 22.27 0.22 -0.63 16 11 C -0.12 -2.04 9.65 22.38 0.22 -1.82 16 12 C 0.11 2.68 8.37 84.24 0.70 3.39 16 13 C -0.29 -9.66 5.55 -20.14 -0.11 -9.77 16 14 C 0.58 25.17 7.51 86.66 0.65 25.82 16 15 O -0.59 -31.04 15.01 -4.06 -0.06 -31.10 16 16 N -0.60 -25.56 2.86 -855.06 -2.44 -28.00 16 17 C 0.06 1.81 9.13 127.77 1.17 2.98 16 18 C 0.26 13.89 5.23 85.63 0.45 14.34 16 19 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 21 C 0.01 0.53 5.46 84.65 0.46 0.99 16 22 N -0.93 -55.47 13.29 21.45 0.28 -55.18 16 23 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 27 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.08 2.69 6.60 -2.39 -0.02 2.67 16 29 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.17 1.19 6.71 -2.91 -0.02 1.18 16 31 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.14 2.57 7.68 -2.91 -0.02 2.54 16 34 H 0.23 3.52 5.11 -2.91 -0.01 3.50 16 35 H 0.08 1.78 7.93 -2.38 -0.02 1.76 16 36 H 0.07 2.06 8.12 -2.39 -0.02 2.04 16 37 H 0.09 2.06 4.65 -2.39 -0.01 2.05 16 38 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 39 H 0.00 0.19 7.36 -2.39 -0.02 0.18 16 40 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -76.86 361.68 4.82 -72.04 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 1.08 Total: 6.98 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 5.86 Total: 7.44 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -3.41 Total: -100.95 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.06 Total: -31.10 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -0.69 Total: -1.13 kcal Total: -76.86 4.82 -72.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095448596.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.370 kcal (2) G-P(sol) polarization free energy of solvation -76.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds