Wall clock time and date at job start Tue Mar 31 2020 05:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99928 * 2 1 4 4 H 1.48503 * 109.47030 * 239.99910 * 3 2 1 5 5 H 1.48504 * 109.46999 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47168 * 119.99786 * 3 2 1 7 7 C 1.37876 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00470 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99755 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46937 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99946 * 275.00075 * 10 9 7 12 12 C 1.53001 * 109.46769 * 274.99847 * 11 10 9 13 13 C 1.52998 * 117.50241 * 243.62011 * 12 11 10 14 14 C 1.52999 * 60.00173 * 252.51520 * 13 12 11 15 15 S 1.65603 * 120.00006 * 95.00234 * 10 9 7 16 16 O 1.42101 * 104.27486 * 153.92890 * 15 10 9 17 17 O 1.42100 * 104.27755 * 26.06651 * 15 10 9 18 18 C 1.81400 * 104.44777 * 269.99767 * 15 10 9 19 19 C 1.50700 * 109.47008 * 180.02562 * 18 15 10 20 20 C 1.38250 * 119.99388 * 90.00216 * 19 18 15 21 21 C 1.38196 * 120.02428 * 180.23533 * 20 19 18 22 22 C 1.38379 * 120.01528 * 359.48406 * 21 20 19 23 23 Cl 1.73601 * 120.00731 * 180.27896 * 22 21 20 24 24 C 1.38313 * 119.98628 * 0.51109 * 22 21 20 25 25 C 1.38334 * 119.99592 * 269.97448 * 19 18 15 26 26 Cl 1.73607 * 120.00370 * 0.04881 * 25 19 18 27 27 H 0.96993 * 120.00244 * 0.02562 * 1 2 3 28 28 H 1.08992 * 109.46878 * 59.99989 * 9 7 2 29 29 H 1.08995 * 109.46850 * 299.99858 * 9 7 2 30 30 H 1.08994 * 109.46956 * 35.00176 * 11 10 9 31 31 H 1.09001 * 109.46962 * 155.00223 * 11 10 9 32 32 H 1.08999 * 115.55049 * 29.33449 * 12 11 10 33 33 H 1.08999 * 117.49417 * 0.02562 * 13 12 11 34 34 H 1.08994 * 117.50016 * 145.02187 * 13 12 11 35 35 H 1.09006 * 117.49772 * 252.50939 * 14 13 12 36 36 H 1.09002 * 117.49930 * 107.48885 * 14 13 12 37 37 H 1.08989 * 109.47207 * 59.99936 * 18 15 10 38 38 H 1.09004 * 109.47215 * 299.99601 * 18 15 10 39 39 H 1.08002 * 119.98396 * 359.94940 * 20 19 18 40 40 H 1.08002 * 119.99082 * 179.74676 * 21 20 19 41 41 H 1.08001 * 120.01715 * 179.76414 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 2.7642 -4.0980 -1.2615 12 6 1.8050 -5.1111 -1.8896 13 6 2.3015 -6.5495 -2.0487 14 6 2.1564 -5.6500 -3.2778 15 16 2.6451 -4.3226 1.4311 16 8 3.0181 -5.6441 1.0654 17 8 1.5428 -4.0851 2.2959 18 6 4.0958 -3.3793 1.9754 19 6 4.5967 -3.9379 3.2824 20 6 5.5404 -4.9482 3.2858 21 6 5.9966 -5.4643 4.4839 22 6 5.5169 -4.9627 5.6811 23 17 6.0955 -5.6061 7.1860 24 6 4.5729 -3.9518 5.6783 25 6 4.1126 -3.4393 4.4785 26 17 2.9272 -2.1709 4.4740 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8903 30 1 2.9040 -3.2591 -1.9431 31 1 3.7251 -4.5765 -1.0722 32 1 0.7498 -4.9652 -1.6586 33 1 3.3113 -6.7742 -1.7056 34 1 1.5729 -7.3503 -1.9223 35 1 1.3322 -5.8590 -3.9600 36 1 3.0709 -5.2828 -3.7436 37 1 3.8200 -2.3334 2.1088 38 1 4.8814 -3.4550 1.2236 39 1 5.9178 -5.3375 2.3518 40 1 6.7308 -6.2564 4.4859 41 1 4.1954 -3.5626 6.6123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095454503.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:25 Heat of formation + Delta-G solvation = -35.224401 kcal Electronic energy + Delta-G solvation = -28174.538778 eV Core-core repulsion = 24041.181894 eV Total energy + Delta-G solvation = -4133.356884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 377.041 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.78226 -37.58578 -36.96462 -36.55291 -36.31324 -35.36536 -34.82984 -32.99975 -32.45284 -31.14590 -27.87326 -27.35606 -25.45029 -23.23350 -22.64402 -22.05996 -21.85668 -20.26896 -18.32947 -17.58982 -17.15368 -16.58657 -16.44282 -16.07063 -15.65823 -15.44378 -14.85609 -14.55652 -14.33145 -14.15120 -14.00815 -13.82093 -13.56736 -12.83731 -12.60453 -12.45829 -12.40370 -12.18631 -11.85906 -11.83220 -11.51683 -11.50416 -11.34875 -11.30527 -11.22423 -11.20112 -11.14855 -10.88141 -10.78769 -10.66466 -10.53272 -10.18195 -10.11691 -9.78804 -9.50874 -9.16167 -8.75951 -8.53038 -8.07000 -6.15174 -4.23072 0.42387 0.83147 1.03421 1.65791 2.18693 3.16829 3.22384 3.23708 3.28942 3.31283 4.12081 4.16558 4.32418 4.34722 4.51243 4.58657 4.72343 4.94226 5.02750 5.06853 5.17818 5.21327 5.27947 5.34914 5.42921 5.58711 5.60390 5.76186 5.82016 5.87981 5.89238 5.99993 6.13145 6.18606 6.28282 6.38377 6.49982 6.67089 7.30873 7.38028 7.60422 7.80427 8.09211 8.80632 9.43582 10.92540 Molecular weight = 377.04amu Principal moments of inertia in cm(-1) A = 0.008626 B = 0.003876 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.048843 B = 7221.520371 C = 9659.009375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.069 3.931 3 Si 0.888 3.112 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.243 3.757 10 N -0.978 5.978 11 C 0.162 3.838 12 C -0.162 4.162 13 C -0.173 4.173 14 C -0.182 4.182 15 S 2.608 3.392 16 O -0.964 6.964 17 O -0.937 6.937 18 C -0.607 4.607 19 C -0.066 4.066 20 C -0.086 4.086 21 C -0.106 4.106 22 C -0.024 4.024 23 Cl -0.061 7.061 24 C -0.102 4.102 25 C -0.021 4.021 26 Cl -0.021 7.021 27 H 0.266 0.734 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.158 0.842 38 H 0.140 0.860 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.765 -10.105 5.499 16.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.587 4.587 8 H 0.079 0.921 9 C 0.121 3.879 10 N -0.816 5.816 11 C 0.036 3.964 12 C -0.182 4.182 13 C -0.210 4.210 14 C -0.220 4.220 15 S 2.698 3.302 16 O -0.954 6.954 17 O -0.928 6.928 18 C -0.731 4.731 19 C -0.069 4.069 20 C -0.105 4.105 21 C -0.124 4.124 22 C -0.052 4.052 23 Cl -0.032 7.032 24 C -0.121 4.121 25 C -0.049 4.049 26 Cl 0.008 6.992 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.176 0.824 38 H 0.159 0.841 39 H 0.167 0.833 40 H 0.162 0.838 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 11.098 -10.597 6.037 16.490 hybrid contribution 0.897 1.753 -0.035 1.970 sum 11.995 -8.844 6.002 16.066 Atomic orbital electron populations 1.69912 1.05988 1.27319 1.49070 1.24912 0.94780 0.99066 0.94743 0.86714 0.79768 0.83169 0.78779 1.20072 1.21052 1.20030 1.21507 0.93400 0.90936 1.52902 0.92148 1.19268 0.87351 0.81337 0.99923 1.57437 1.56644 1.49253 1.18262 1.20645 0.93648 0.95928 0.86196 1.22819 1.01332 0.95357 0.98742 1.22966 1.02674 0.93781 1.01588 1.22924 1.03032 1.04988 0.91057 1.05139 0.75980 0.74631 0.74444 1.93538 1.85187 1.34155 1.82511 1.93592 1.46934 1.85831 1.66399 1.30072 1.23065 1.17737 1.02232 1.19121 0.98288 0.97265 0.92211 1.21120 0.95418 0.95003 0.98935 1.21122 1.00655 1.00456 0.90203 1.20792 0.98837 0.97807 0.87736 1.98380 1.87712 1.85512 1.31557 1.20926 0.96860 0.96341 0.97971 1.20886 0.95591 0.94750 0.93652 1.98475 1.53986 1.48126 1.98614 0.92444 0.94013 0.92627 0.89514 0.91658 0.87414 0.88611 0.89413 0.89183 0.88980 0.82360 0.84131 0.83325 0.83801 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.55 -13.75 9.38 -34.44 -0.32 -14.08 16 8 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 9 C 0.24 5.79 5.41 -5.19 -0.03 5.77 16 10 N -0.98 -19.19 2.70 -115.67 -0.31 -19.50 16 11 C 0.16 2.70 5.54 -4.04 -0.02 2.68 16 12 C -0.16 -2.58 6.01 -90.62 -0.54 -3.12 16 13 C -0.17 -2.41 10.18 -26.73 -0.27 -2.68 16 14 C -0.18 -2.33 10.25 -26.73 -0.27 -2.61 16 15 S 2.61 49.12 5.35 -107.50 -0.58 48.54 16 16 O -0.96 -18.13 16.99 -57.54 -0.98 -19.11 16 17 O -0.94 -20.77 16.24 -57.54 -0.93 -21.71 16 18 C -0.61 -9.47 5.91 36.01 0.21 -9.26 16 19 C -0.07 -0.96 5.14 -104.58 -0.54 -1.50 16 20 C -0.09 -1.01 9.70 -39.59 -0.38 -1.39 16 21 C -0.11 -1.10 9.83 -39.54 -0.39 -1.49 16 22 C -0.02 -0.27 6.32 -39.50 -0.25 -0.52 16 23 Cl -0.06 -0.59 28.96 -51.86 -1.50 -2.09 16 24 C -0.10 -1.26 9.62 -39.51 -0.38 -1.64 16 25 C -0.02 -0.30 6.31 -39.50 -0.25 -0.55 16 26 Cl -0.02 -0.36 27.01 -51.86 -1.40 -1.76 16 27 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 29 H 0.06 1.47 6.81 -51.93 -0.35 1.12 16 30 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 31 H 0.07 0.93 7.34 -51.93 -0.38 0.55 16 32 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 33 H 0.10 1.30 8.03 -51.93 -0.42 0.88 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.16 2.69 6.90 -51.93 -0.36 2.33 16 38 H 0.14 1.72 8.08 -51.92 -0.42 1.30 16 39 H 0.15 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 392.70 15.07 5.92 5.92 Total: -1.00 -30.12 392.70 -12.88 -43.01 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -5.28 Total: 4.21 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: -3.54 Total: -28.70 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.42 Total: -43.49 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -1.91 Total: -40.82 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.58 Total: 48.54 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -2.90 Total: -3.85 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.12 -12.88 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095454503.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.781 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds