Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00130 * 2 1 4 4 H 1.48498 * 109.46997 * 239.99352 * 3 2 1 5 5 H 1.48499 * 109.46873 * 0.02562 * 3 2 1 6 6 H 1.48509 * 109.46915 * 119.99511 * 3 2 1 7 7 C 1.37882 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99441 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00139 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.47254 * 179.97438 * 9 7 2 11 11 C 1.76197 * 103.00120 * 179.97438 * 10 9 7 12 12 C 1.38731 * 120.09881 * 0.27459 * 11 10 9 13 13 C 1.38253 * 119.99084 * 180.32108 * 12 11 10 14 14 C 1.38277 * 120.19467 * 359.67773 * 13 12 11 15 15 C 1.38278 * 120.20571 * 0.02562 * 14 13 12 16 16 C 1.38647 * 120.00684 * 0.04111 * 15 14 13 17 17 N 1.39997 * 120.10183 * 179.97438 * 16 15 14 18 18 C 1.46499 * 120.00043 * 359.97438 * 17 16 15 19 19 C 1.53001 * 109.47392 * 179.97438 * 18 17 16 20 20 H 1.08998 * 109.47430 * 305.00490 * 19 18 17 21 21 O 1.42906 * 109.46583 * 65.00540 * 19 18 17 22 22 C 1.52997 * 109.47242 * 185.00142 * 19 18 17 23 23 O 1.42905 * 109.47264 * 175.00315 * 22 19 18 24 24 C 1.35946 * 117.00012 * 180.02562 * 23 22 19 25 25 C 1.38664 * 120.06928 * 0.02562 * 24 23 22 26 26 C 1.38175 * 119.97598 * 179.97438 * 25 24 23 27 27 C 1.38267 * 120.09147 * 0.02562 * 26 25 24 28 28 C 1.38248 * 120.12676 * 359.97438 * 27 26 25 29 29 C 1.38333 * 120.03366 * 359.70096 * 28 27 26 30 30 F 1.35097 * 120.05101 * 180.27870 * 29 28 27 31 31 H 0.96997 * 119.99595 * 0.02562 * 1 2 3 32 32 H 1.09004 * 109.47050 * 59.99459 * 9 7 2 33 33 H 1.09005 * 109.47173 * 299.99799 * 9 7 2 34 34 H 1.07998 * 120.00600 * 0.02562 * 12 11 10 35 35 H 1.07994 * 119.90075 * 179.70190 * 13 12 11 36 36 H 1.08003 * 119.89443 * 180.02562 * 14 13 12 37 37 H 1.08000 * 120.00158 * 180.02562 * 15 14 13 38 38 H 0.97002 * 120.00476 * 180.02562 * 17 16 15 39 39 H 1.09005 * 109.47209 * 60.00310 * 18 17 16 40 40 H 1.09000 * 109.47614 * 300.00672 * 18 17 16 41 41 H 0.96697 * 113.99941 * 60.00263 * 21 19 18 42 42 H 1.09001 * 109.47289 * 55.00149 * 22 19 18 43 43 H 1.09004 * 109.47261 * 295.00405 * 22 19 18 44 44 H 1.08005 * 120.00901 * 359.97438 * 25 24 23 45 45 H 1.07997 * 119.95363 * 180.02562 * 26 25 24 46 46 H 1.08001 * 119.93251 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.98419 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4298 -3.8780 0.0005 11 6 1.3824 -5.2949 0.0013 12 6 0.0037 -5.1409 -0.0040 13 6 -0.8160 -6.2542 0.0033 14 6 -0.2659 -7.5228 0.0092 15 6 1.1072 -7.6857 0.0084 16 6 1.9372 -6.5751 0.0024 17 7 3.3277 -6.7377 0.0021 18 6 3.9079 -8.0829 0.0086 19 6 5.4344 -7.9800 0.0062 20 1 5.7563 -7.3719 -0.8392 21 8 5.8728 -7.3734 1.2236 22 6 6.0398 -9.3801 -0.1128 23 8 7.4601 -9.2764 -0.2322 24 6 8.1561 -10.4384 -0.3484 25 6 7.4863 -11.6525 -0.3481 26 6 8.1956 -12.8323 -0.4669 27 6 9.5729 -12.8042 -0.5856 28 6 10.2448 -11.5960 -0.5864 29 6 9.5393 -10.4114 -0.4745 30 9 10.1950 -9.2302 -0.4809 31 1 -0.4849 0.8401 -0.0004 32 1 0.6246 -2.5571 -0.8897 33 1 0.6240 -2.5568 0.8903 34 1 -0.4292 -4.1515 -0.0091 35 1 -1.8891 -6.1326 0.0040 36 1 -0.9109 -8.3891 0.0145 37 1 1.5333 -8.6781 0.0126 38 1 3.9071 -5.9597 -0.0016 39 1 3.5793 -8.6247 -0.8783 40 1 3.5807 -8.6155 0.9016 41 1 5.6210 -7.8618 2.0193 42 1 5.6363 -9.8766 -0.9953 43 1 5.7913 -9.9602 0.7760 44 1 6.4105 -11.6759 -0.2551 45 1 7.6735 -13.7777 -0.4671 46 1 10.1248 -13.7280 -0.6779 47 1 11.3207 -11.5768 -0.6788 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095944781.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = -84.235406 kcal Electronic energy + Delta-G solvation = -29906.580404 eV Core-core repulsion = 25481.027812 eV Total energy + Delta-G solvation = -4425.552592 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.09709 -40.58644 -39.21516 -38.37855 -37.25926 -34.93947 -33.21142 -31.64709 -31.18702 -30.72343 -30.19737 -28.62978 -28.50019 -25.86335 -23.66949 -23.19593 -22.90793 -22.57739 -21.71605 -21.05308 -18.91649 -17.79556 -17.70779 -17.24333 -17.10529 -16.61209 -16.34605 -16.14163 -16.02271 -15.54723 -15.41087 -15.04725 -14.86060 -14.71029 -14.59984 -14.07256 -13.72522 -13.66787 -13.57824 -13.24535 -13.15513 -12.89994 -12.79360 -12.62700 -12.32576 -12.26547 -12.09283 -11.81280 -11.59538 -11.55565 -11.26533 -10.93653 -10.89305 -10.69331 -10.51859 -9.96561 -9.95213 -9.65654 -9.46111 -9.14692 -9.02927 -8.67939 -8.59760 -7.53541 -6.33699 -6.23237 -4.28449 0.61654 0.75678 1.69881 1.92799 2.38062 2.56997 3.07565 3.27059 3.30184 3.34562 3.45449 3.73461 3.81590 3.96754 4.15230 4.17170 4.28072 4.32829 4.37177 4.45366 4.48783 4.61451 4.72318 4.77252 4.88793 5.01793 5.14054 5.14200 5.23778 5.36064 5.44131 5.53902 5.57111 5.61053 5.66846 5.83494 5.86534 5.99478 6.13810 6.26324 6.47499 6.68661 6.79797 6.94472 7.01222 7.03935 7.12528 7.28845 7.52511 7.69982 7.89265 7.94200 8.72406 9.35167 10.87926 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.010908 B = 0.001710 C = 0.001490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2566.230084 B =16373.137359 C =18781.694037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.067 0.933 9 C 0.078 3.922 10 S -0.174 6.174 11 C -0.134 4.134 12 C -0.089 4.089 13 C -0.157 4.157 14 C -0.095 4.095 15 C -0.190 4.190 16 C 0.222 3.778 17 N -0.739 5.739 18 C 0.104 3.896 19 C 0.099 3.901 20 H 0.118 0.882 21 O -0.541 6.541 22 C 0.030 3.970 23 O -0.293 6.293 24 C 0.099 3.901 25 C -0.185 4.185 26 C -0.090 4.090 27 C -0.131 4.131 28 C -0.117 4.117 29 C 0.069 3.931 30 F -0.130 7.130 31 H 0.267 0.733 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.410 0.590 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.375 0.625 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.138 0.862 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.023 -29.605 -0.373 31.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.086 0.914 9 C -0.069 4.069 10 S 0.071 5.929 11 C -0.250 4.250 12 C -0.114 4.114 13 C -0.179 4.179 14 C -0.117 4.117 15 C -0.215 4.215 16 C 0.114 3.886 17 N -0.373 5.373 18 C -0.022 4.022 19 C 0.039 3.961 20 H 0.136 0.864 21 O -0.345 6.345 22 C -0.046 4.046 23 O -0.206 6.206 24 C 0.053 3.947 25 C -0.204 4.204 26 C -0.108 4.108 27 C -0.150 4.150 28 C -0.136 4.136 29 C 0.049 3.951 30 F -0.109 7.109 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.248 0.752 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.223 0.777 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.155 0.845 45 H 0.150 0.850 46 H 0.152 0.848 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.508 -28.777 -0.780 31.800 hybrid contribution -1.201 0.602 0.326 1.383 sum 12.307 -28.175 -0.454 30.749 Atomic orbital electron populations 1.69937 1.06127 1.27580 1.49105 1.24945 0.94989 0.99270 0.94435 0.86393 0.79407 0.81741 0.79018 1.19859 1.21001 1.19848 1.20594 0.93438 0.88630 1.53086 0.91447 1.21314 0.94228 0.90684 1.00667 1.85027 1.18192 0.98245 1.91424 1.21528 0.97138 0.95966 1.10413 1.21199 0.91682 0.99787 0.98768 1.20815 0.99198 0.92255 1.05586 1.20748 0.94068 0.96844 1.00057 1.20381 0.93474 0.96185 1.11435 1.17252 0.83267 0.91916 0.96142 1.44474 1.03186 1.06534 1.83087 1.21727 0.91915 0.86622 1.01923 1.22112 0.91670 0.92201 0.90078 0.86411 1.86742 1.80043 1.52842 1.14900 1.23566 0.79104 0.99427 1.02478 1.86228 1.19819 1.27168 1.87434 1.19086 0.90428 0.86452 0.98780 1.21203 1.00799 0.91285 1.07102 1.21043 0.94172 0.97864 0.97716 1.20955 0.94381 0.97458 1.02172 1.21073 1.00938 0.90562 1.00979 1.17054 0.87197 0.82230 1.08580 1.91534 1.80575 1.44584 1.94158 0.92338 0.93929 0.93910 0.85153 0.86607 0.86736 0.86735 0.75161 0.91362 0.91872 0.77716 0.90451 0.91027 0.84474 0.84968 0.84785 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 13.29 55.43 0.74 -24.87 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.91 21.32 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.49 9.13 -34.44 -0.31 -14.80 16 8 H 0.07 1.87 7.71 -52.49 -0.40 1.47 16 9 C 0.08 2.01 4.09 36.00 0.15 2.16 16 10 S -0.17 -3.81 20.37 -107.50 -2.19 -6.00 16 11 C -0.13 -2.58 6.12 -38.92 -0.24 -2.82 16 12 C -0.09 -1.68 9.36 -39.39 -0.37 -2.04 16 13 C -0.16 -2.45 10.04 -39.56 -0.40 -2.85 16 14 C -0.10 -1.30 10.04 -39.55 -0.40 -1.70 16 15 C -0.19 -2.61 9.31 -39.42 -0.37 -2.98 16 16 C 0.22 3.58 6.66 -83.50 -0.56 3.02 16 17 N -0.74 -10.23 5.63 -58.45 -0.33 -10.56 16 18 C 0.10 0.94 4.56 -4.04 -0.02 0.92 16 19 C 0.10 0.89 3.28 -26.73 -0.09 0.80 16 20 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 21 O -0.54 -5.86 13.25 -40.07 -0.53 -6.39 16 22 C 0.03 0.21 4.38 37.16 0.16 0.37 16 23 O -0.29 -3.07 9.97 -24.41 -0.24 -3.31 16 24 C 0.10 0.93 6.69 -39.17 -0.26 0.66 16 25 C -0.19 -1.21 9.04 -39.45 -0.36 -1.56 16 26 C -0.09 -0.47 10.04 -39.59 -0.40 -0.87 16 27 C -0.13 -0.70 10.04 -39.57 -0.40 -1.09 16 28 C -0.12 -0.81 10.02 -39.54 -0.40 -1.21 16 29 C 0.07 0.68 7.31 -39.30 -0.29 0.39 16 30 F -0.13 -1.57 17.11 2.25 0.04 -1.53 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.04 1.15 7.74 -51.92 -0.40 0.74 16 33 H 0.04 1.15 7.76 -51.92 -0.40 0.75 16 34 H 0.13 2.65 5.88 -52.49 -0.31 2.34 16 35 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.11 1.22 6.74 -52.49 -0.35 0.87 16 38 H 0.41 6.40 7.02 -40.82 -0.29 6.11 16 39 H 0.07 0.53 7.95 -51.93 -0.41 0.12 16 40 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 41 H 0.38 2.69 9.04 45.56 0.41 3.10 16 42 H 0.08 0.40 7.66 -51.93 -0.40 0.00 16 43 H 0.07 0.35 7.67 -51.93 -0.40 -0.05 16 44 H 0.14 0.60 6.30 -52.48 -0.33 0.27 16 45 H 0.13 0.37 8.06 -52.49 -0.42 -0.06 16 46 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 47 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 412.20 15.07 6.21 6.21 Total: -1.00 -33.05 412.20 -11.33 -44.38 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.37 Total: 7.57 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -4.63 Total: -21.79 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.41 Total: -35.43 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.77 Total: -9.70 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -2.19 Total: -6.00 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.05 -11.33 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095944781.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.860 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds