Wall clock time and date at job start Tue Mar 31 2020 05:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99807 * 2 1 4 4 H 1.48496 * 109.47074 * 239.99941 * 3 2 1 5 5 H 1.48501 * 109.47282 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46804 * 120.00000 * 3 2 1 7 7 C 1.37871 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00359 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99873 * 0.02562 * 7 2 1 10 10 S 1.81403 * 109.46909 * 180.02562 * 9 7 2 11 11 C 1.76200 * 102.99787 * 179.97438 * 10 9 7 12 12 C 1.38794 * 120.10480 * 0.29816 * 11 10 9 13 13 C 1.38194 * 119.98855 * 180.27444 * 12 11 10 14 14 C 1.38305 * 120.20032 * 359.72278 * 13 12 11 15 15 C 1.38248 * 120.20927 * 359.97438 * 14 13 12 16 16 C 1.38651 * 120.00712 * 0.02562 * 15 14 13 17 17 N 1.40142 * 120.09890 * 180.02562 * 16 15 14 18 18 C 1.34785 * 119.99862 * 34.67004 * 17 16 15 19 19 O 1.21291 * 119.99900 * 355.52888 * 18 17 16 20 20 C 1.50701 * 119.99766 * 175.52424 * 18 17 16 21 21 O 1.42897 * 109.46848 * 180.02562 * 20 18 17 22 22 C 1.35927 * 116.99851 * 180.02562 * 21 20 18 23 23 C 1.38709 * 120.06019 * 359.97438 * 22 21 20 24 24 C 1.38153 * 119.95790 * 180.02562 * 23 22 21 25 25 C 1.38274 * 120.07508 * 0.02562 * 24 23 22 26 26 C 1.38251 * 120.12060 * 359.97398 * 25 24 23 27 27 C 1.38249 * 120.04343 * 0.02562 * 26 25 24 28 28 Cl 1.73606 * 120.03915 * 179.97438 * 27 26 25 29 29 H 0.96993 * 119.99716 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47274 * 59.99832 * 9 7 2 31 31 H 1.08997 * 109.47124 * 300.00029 * 9 7 2 32 32 H 1.08002 * 120.00426 * 359.97105 * 12 11 10 33 33 H 1.08001 * 119.90362 * 179.74244 * 13 12 11 34 34 H 1.07995 * 119.89320 * 179.97438 * 14 13 12 35 35 H 1.07999 * 119.99611 * 180.02562 * 15 14 13 36 36 H 0.96998 * 120.00433 * 214.67147 * 17 16 15 37 37 H 1.08998 * 109.47025 * 60.00220 * 20 18 17 38 38 H 1.09004 * 109.46791 * 300.00013 * 20 18 17 39 39 H 1.08003 * 120.01752 * 0.02562 * 23 22 21 40 40 H 1.07996 * 119.96339 * 180.02562 * 24 23 22 41 41 H 1.08000 * 119.94006 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.97533 * 179.75072 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 16 2.4300 -3.8779 -0.0014 11 6 1.3827 -5.2948 -0.0021 12 6 0.0033 -5.1410 -0.0089 13 6 -0.8159 -6.2539 -0.0037 14 6 -0.2656 -7.5228 0.0025 15 6 1.1073 -7.6856 0.0031 16 6 1.9373 -6.5750 -0.0021 17 7 3.3292 -6.7378 -0.0022 18 6 3.8866 -7.7725 -0.6620 19 8 3.1811 -8.6076 -1.1873 20 6 5.3865 -7.8916 -0.7472 21 8 5.7298 -9.0617 -1.4923 22 6 7.0537 -9.3182 -1.6629 23 6 8.0025 -8.4613 -1.1249 24 6 9.3475 -8.7237 -1.3000 25 6 9.7488 -9.8394 -2.0115 26 6 8.8059 -10.6956 -2.5492 27 6 7.4586 -10.4377 -2.3769 28 17 6.2747 -11.5126 -3.0526 29 1 -0.4849 0.8400 -0.0004 30 1 0.6248 -2.5563 -0.8919 31 1 0.6241 -2.5575 0.8880 32 1 -0.4297 -4.1516 -0.0133 33 1 -1.8890 -6.1326 -0.0048 34 1 -0.9104 -8.3891 0.0070 35 1 1.5333 -8.6780 0.0075 36 1 3.8915 -6.1060 0.4727 37 1 5.8027 -7.9651 0.2575 38 1 5.7931 -7.0116 -1.2456 39 1 7.6899 -7.5894 -0.5693 40 1 10.0862 -8.0568 -0.8808 41 1 10.8009 -10.0422 -2.1475 42 1 9.1220 -11.5641 -3.1079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:17 Heat of formation + Delta-G solvation = -25.276695 kcal Electronic energy + Delta-G solvation = -27430.775340 eV Core-core repulsion = 23300.282671 eV Total energy + Delta-G solvation = -4130.492670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 377.064 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92277 -40.13680 -38.39343 -37.55001 -36.59410 -34.78000 -33.32298 -31.36159 -30.96547 -30.79945 -29.86548 -28.66760 -27.91549 -23.77601 -23.29078 -22.88502 -22.73132 -21.96905 -20.41318 -18.90657 -18.21383 -17.19659 -16.90799 -16.77188 -16.50150 -16.32499 -16.14652 -15.18476 -14.99175 -14.98222 -14.69258 -14.37684 -14.28406 -14.08089 -13.52737 -13.38011 -13.11685 -13.05150 -12.97164 -12.43375 -12.32996 -12.28468 -11.86040 -11.80792 -11.64280 -11.52785 -11.29642 -11.04932 -10.98065 -10.84619 -10.41731 -10.11674 -9.83089 -9.77538 -9.32771 -9.29383 -9.23435 -8.69911 -8.61452 -8.15314 -6.69178 -6.33412 -4.39853 0.70899 0.87710 1.40650 1.62354 1.89851 2.12591 2.36124 2.45541 3.18822 3.19056 3.23232 3.25763 3.31117 3.52724 4.00120 4.21953 4.23669 4.31363 4.49687 4.55611 4.66223 4.73286 4.82148 5.00280 5.04120 5.20688 5.26362 5.28347 5.50228 5.62445 5.71226 5.74702 5.75488 5.96546 6.12177 6.15649 6.39722 6.46196 6.62695 6.77746 6.80024 6.87342 6.90768 7.20153 7.29721 7.58194 7.81435 7.95760 8.60604 9.24520 10.77604 Molecular weight = 377.06amu Principal moments of inertia in cm(-1) A = 0.010205 B = 0.002017 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.022199 B =13876.640563 C =16249.821692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.077 3.923 10 S -0.168 6.168 11 C -0.089 4.089 12 C -0.118 4.118 13 C -0.111 4.111 14 C -0.125 4.125 15 C -0.106 4.106 16 C 0.144 3.856 17 N -0.657 5.657 18 C 0.517 3.483 19 O -0.498 6.498 20 C 0.041 3.959 21 O -0.276 6.276 22 C 0.140 3.860 23 C -0.200 4.200 24 C -0.074 4.074 25 C -0.148 4.148 26 C -0.073 4.073 27 C -0.068 4.068 28 Cl -0.052 7.052 29 H 0.268 0.732 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.414 0.586 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.162 -19.372 -0.534 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.086 0.914 9 C -0.069 4.069 10 S 0.078 5.922 11 C -0.204 4.204 12 C -0.142 4.142 13 C -0.131 4.131 14 C -0.146 4.146 15 C -0.127 4.127 16 C 0.044 3.956 17 N -0.304 5.304 18 C 0.302 3.698 19 O -0.371 6.371 20 C -0.038 4.038 21 O -0.188 6.188 22 C 0.093 3.907 23 C -0.219 4.219 24 C -0.092 4.092 25 C -0.166 4.166 26 C -0.092 4.092 27 C -0.095 4.095 28 Cl -0.023 7.023 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.155 0.845 36 H 0.251 0.749 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 15.519 -19.874 -1.071 25.238 hybrid contribution -0.757 1.358 0.273 1.578 sum 14.763 -18.516 -0.798 23.694 Atomic orbital electron populations 1.69928 1.06146 1.27773 1.48666 1.24951 0.95013 0.99331 0.94315 0.86376 0.79422 0.81678 0.78994 1.19828 1.20928 1.19830 1.20551 0.93384 0.88511 1.53626 0.91422 1.21374 0.94142 0.90453 1.00965 1.85015 1.18415 0.98193 1.90540 1.21889 0.97490 0.96110 1.04917 1.21253 0.91544 1.00125 1.01311 1.21070 0.99619 0.92245 1.00215 1.20955 0.94362 0.97142 1.02183 1.21103 0.93136 0.98029 1.00433 1.17080 0.81714 0.92121 1.04647 1.43196 1.06128 1.28989 1.52100 1.19966 0.89319 0.81802 0.78721 1.90757 1.62793 1.39350 1.44194 1.22500 0.94028 0.89104 0.98169 1.86236 1.20041 1.42781 1.69730 1.18738 0.83287 0.93477 0.95192 1.21309 0.93476 1.01460 1.05647 1.21081 0.95136 0.96648 0.96321 1.21060 0.99715 0.95500 1.00327 1.20956 0.89681 0.99925 0.98648 1.20236 0.90972 0.94089 1.04240 1.98394 1.57215 1.63065 1.83599 0.92189 0.93674 0.93683 0.84606 0.85974 0.86007 0.84468 0.74893 0.88362 0.88023 0.84300 0.84914 0.84883 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.61 13.29 55.43 0.74 -23.88 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 3 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 7 C -0.52 -13.76 9.13 -34.44 -0.31 -14.07 16 8 H 0.07 1.76 7.71 -52.48 -0.40 1.35 16 9 C 0.08 1.87 4.09 36.01 0.15 2.02 16 10 S -0.17 -3.34 20.72 -107.50 -2.23 -5.57 16 11 C -0.09 -1.62 6.12 -38.90 -0.24 -1.86 16 12 C -0.12 -2.10 9.36 -39.39 -0.37 -2.47 16 13 C -0.11 -1.69 10.04 -39.57 -0.40 -2.09 16 14 C -0.12 -1.80 10.04 -39.55 -0.40 -2.20 16 15 C -0.11 -1.67 8.70 -39.43 -0.34 -2.01 16 16 C 0.14 2.38 6.32 -83.43 -0.53 1.85 16 17 N -0.66 -8.96 5.03 -9.71 -0.05 -9.00 16 18 C 0.52 6.98 7.75 -10.98 -0.09 6.89 16 19 O -0.50 -8.57 13.92 -14.36 -0.20 -8.77 16 20 C 0.04 0.39 5.22 36.01 0.19 0.58 16 21 O -0.28 -3.37 9.13 -39.42 -0.36 -3.73 16 22 C 0.14 1.46 6.68 -39.19 -0.26 1.20 16 23 C -0.20 -1.56 9.04 -39.44 -0.36 -1.91 16 24 C -0.07 -0.47 10.04 -39.60 -0.40 -0.87 16 25 C -0.15 -0.93 10.04 -39.56 -0.40 -1.33 16 26 C -0.07 -0.56 9.83 -39.57 -0.39 -0.95 16 27 C -0.07 -0.70 6.33 -39.36 -0.25 -0.95 16 28 Cl -0.05 -0.59 28.51 -51.86 -1.48 -2.07 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.05 1.15 7.74 -51.93 -0.40 0.75 16 31 H 0.04 1.14 7.76 -51.93 -0.40 0.73 16 32 H 0.14 2.58 5.88 -52.49 -0.31 2.27 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 34 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.14 2.15 6.20 -52.49 -0.33 1.83 16 36 H 0.41 4.78 7.96 -40.82 -0.32 4.45 16 37 H 0.10 0.63 7.66 -51.93 -0.40 0.23 16 38 H 0.10 0.77 7.66 -51.93 -0.40 0.37 16 39 H 0.14 0.78 6.30 -52.48 -0.33 0.45 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 42 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 389.10 15.07 5.86 5.86 Total: -1.00 -31.80 389.10 -11.76 -43.57 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.54 Total: 4.73 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -4.48 Total: -16.45 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: 0.69 Total: -32.88 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.56 Total: -12.51 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -3.34 SS G_CDS: -2.23 Total: -5.57 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.48 Total: -2.07 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.80 -11.76 -43.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.290 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds