Wall clock time and date at job start Tue Mar 31 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00292 * 2 1 4 4 H 1.48496 * 109.47274 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47094 * 299.99841 * 3 2 1 6 6 H 1.48504 * 109.46881 * 59.99782 * 3 2 1 7 7 C 1.37874 * 119.99707 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00130 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00024 * 0.02562 * 7 2 1 10 10 S 1.81406 * 109.47029 * 179.97438 * 9 7 2 11 11 C 1.76202 * 102.99685 * 179.97438 * 10 9 7 12 12 C 1.38784 * 120.10553 * 0.02562 * 11 10 9 13 13 C 1.38197 * 119.98624 * 180.02562 * 12 11 10 14 14 C 1.38294 * 120.20353 * 359.97438 * 13 12 11 15 15 C 1.38257 * 120.20709 * 359.97438 * 14 13 12 16 16 C 1.38650 * 120.00967 * 0.02562 * 15 14 13 17 17 N 1.40141 * 120.09767 * 180.02562 * 16 15 14 18 18 C 1.34775 * 120.00236 * 24.81437 * 17 16 15 19 19 O 1.21294 * 120.00178 * 5.52499 * 18 17 16 20 20 C 1.50698 * 119.99989 * 185.53289 * 18 17 16 21 21 C 1.50699 * 109.47246 * 179.97438 * 20 18 17 22 22 C 1.36124 * 120.16979 * 264.71962 * 21 20 18 23 23 C 1.39340 * 120.98947 * 179.77209 * 22 21 20 24 24 C 1.36126 * 120.98607 * 0.48434 * 23 22 21 25 25 C 1.40504 * 119.65102 * 359.77609 * 24 23 22 26 26 C 1.40542 * 121.27829 * 180.02562 * 25 24 23 27 27 C 1.36092 * 119.65618 * 179.97438 * 26 25 24 28 28 C 1.39388 * 120.98724 * 0.02562 * 27 26 25 29 29 C 1.36094 * 120.99353 * 359.95532 * 28 27 26 30 30 C 1.40501 * 120.17069 * 84.99692 * 21 20 18 31 31 H 0.97000 * 119.99600 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.47152 * 59.99443 * 9 7 2 33 33 H 1.09005 * 109.46583 * 299.99168 * 9 7 2 34 34 H 1.07998 * 120.00930 * 0.02562 * 12 11 10 35 35 H 1.08003 * 119.89765 * 180.02562 * 13 12 11 36 36 H 1.07997 * 119.89836 * 179.72428 * 14 13 12 37 37 H 1.08005 * 119.99565 * 180.02562 * 15 14 13 38 38 H 0.96998 * 119.99355 * 204.81414 * 17 16 15 39 39 H 1.09012 * 109.46971 * 299.99741 * 20 18 17 40 40 H 1.08995 * 109.47328 * 59.99241 * 20 18 17 41 41 H 1.07993 * 119.50909 * 0.02562 * 22 21 20 42 42 H 1.07999 * 119.50406 * 180.24089 * 23 22 21 43 43 H 1.08003 * 120.17162 * 179.80095 * 24 23 22 44 44 H 1.08002 * 120.17709 * 359.96148 * 26 25 24 45 45 H 1.07990 * 119.50823 * 180.02562 * 27 26 25 46 46 H 1.07993 * 119.50037 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.16972 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3822 -5.2949 0.0013 12 6 0.0030 -5.1409 0.0012 13 6 -0.8163 -6.2538 0.0023 14 6 -0.2662 -7.5227 0.0030 15 6 1.1068 -7.6856 0.0021 16 6 1.9369 -6.5750 0.0010 17 7 3.3287 -6.7380 -0.0006 18 6 3.8743 -7.8687 -0.4908 19 8 3.1699 -8.7015 -1.0215 20 6 5.3595 -8.0985 -0.3794 21 6 5.7102 -9.4267 -0.9990 22 6 5.8148 -10.5385 -0.2206 23 6 6.1335 -11.7759 -0.7762 24 6 6.3591 -11.9071 -2.1122 25 6 6.2654 -10.7807 -2.9469 26 6 6.4908 -10.8772 -4.3307 27 6 6.3908 -9.7649 -5.1085 28 6 6.0680 -8.5278 -4.5533 29 6 5.8425 -8.3964 -3.2176 30 6 5.9366 -9.5227 -2.3824 31 1 -0.4849 0.8401 -0.0004 32 1 0.6246 -2.5570 -0.8896 33 1 0.6240 -2.5567 0.8904 34 1 -0.4301 -4.1515 0.0002 35 1 -1.8895 -6.1323 0.0018 36 1 -0.9110 -8.3890 0.0084 37 1 1.5327 -8.6781 0.0022 38 1 3.8994 -6.0370 0.3512 39 1 5.8905 -7.3022 -0.9012 40 1 5.6491 -8.1004 0.6714 41 1 5.6443 -10.4611 0.8430 42 1 6.2065 -12.6432 -0.1367 43 1 6.6084 -12.8720 -2.5284 44 1 6.7424 -11.8291 -4.7748 45 1 6.5641 -9.8418 -6.1716 46 1 5.9953 -7.6606 -5.1928 47 1 5.5929 -7.4314 -2.8016 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:20 Heat of formation + Delta-G solvation = 27.945287 kcal Electronic energy + Delta-G solvation = -29899.881805 eV Core-core repulsion = 25909.962958 eV Total energy + Delta-G solvation = -3989.918847 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98398 -40.09496 -38.16158 -36.69625 -34.68901 -34.00444 -33.29975 -30.80014 -30.67060 -30.46146 -29.42036 -28.63692 -27.45696 -23.73537 -23.45882 -23.16255 -22.80383 -22.39784 -21.09638 -20.07310 -18.03431 -17.73315 -17.19653 -17.03773 -16.71150 -16.38714 -16.26737 -15.45767 -15.08803 -14.71762 -14.66238 -14.35721 -14.31298 -13.97590 -13.68948 -13.67362 -13.44516 -13.26494 -13.07421 -12.99818 -12.86652 -12.42477 -12.35561 -12.08719 -12.08010 -11.76656 -11.49425 -11.25245 -11.12120 -11.00793 -10.95763 -10.78785 -10.42124 -10.14459 -10.03620 -9.72706 -9.65458 -9.24737 -9.19578 -8.76073 -8.68635 -8.03112 -8.01060 -6.62817 -6.31832 -4.37794 0.33558 0.86779 1.47973 1.67780 1.84896 2.34634 2.61500 2.78792 3.14601 3.17583 3.25388 3.29856 3.56586 3.96075 4.08513 4.22947 4.24984 4.52612 4.59053 4.69813 4.74527 4.83491 4.94128 4.99543 5.05906 5.14274 5.19578 5.26904 5.29867 5.31348 5.33101 5.54783 5.58831 5.77456 5.77892 5.81211 5.93067 6.02857 6.06619 6.19425 6.24781 6.36343 6.44320 6.45660 6.54808 6.64365 6.69962 6.83708 6.84906 6.90095 6.93626 7.27297 7.45110 7.60893 7.83640 8.09751 8.63358 9.26539 10.79321 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.011085 B = 0.002109 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.368664 B =13275.078952 C =14615.128871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.519 4.519 8 H 0.069 0.931 9 C 0.078 3.922 10 S -0.172 6.172 11 C -0.096 4.096 12 C -0.114 4.114 13 C -0.119 4.119 14 C -0.122 4.122 15 C -0.118 4.118 16 C 0.151 3.849 17 N -0.661 5.661 18 C 0.514 3.486 19 O -0.511 6.511 20 C -0.106 4.106 21 C -0.049 4.049 22 C -0.105 4.105 23 C -0.113 4.113 24 C -0.108 4.108 25 C -0.051 4.051 26 C -0.109 4.109 27 C -0.116 4.116 28 C -0.116 4.116 29 C -0.102 4.102 30 C -0.033 4.033 31 H 0.267 0.733 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.135 0.865 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.143 0.857 38 H 0.414 0.586 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.639 -21.937 -2.734 24.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.559 4.559 8 H 0.087 0.913 9 C -0.069 4.069 10 S 0.074 5.926 11 C -0.212 4.212 12 C -0.139 4.139 13 C -0.139 4.139 14 C -0.143 4.143 15 C -0.139 4.139 16 C 0.051 3.949 17 N -0.306 5.306 18 C 0.301 3.699 19 O -0.386 6.386 20 C -0.146 4.146 21 C -0.050 4.050 22 C -0.123 4.123 23 C -0.131 4.131 24 C -0.126 4.126 25 C -0.051 4.051 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.134 4.134 29 C -0.120 4.120 30 C -0.033 4.033 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.153 0.847 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.251 0.749 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 12.305 -22.240 -3.105 25.606 hybrid contribution -0.923 1.295 0.148 1.597 sum 11.382 -20.945 -2.957 24.020 Atomic orbital electron populations 1.69954 1.06145 1.27511 1.48943 1.24958 0.95011 0.99350 0.94366 0.86267 0.80014 0.82355 0.77868 1.19384 1.20621 1.20622 1.20642 0.93472 0.88495 1.53248 0.91303 1.21369 0.94120 0.90451 1.00924 1.84975 1.18484 0.98307 1.90833 1.21799 0.97445 0.96014 1.05913 1.21227 0.91581 1.00029 1.01075 1.21031 0.99512 0.92291 1.01074 1.20946 0.94418 0.97029 1.01949 1.21200 0.93069 0.98308 1.01369 1.17212 0.82319 0.92192 1.03221 1.43556 1.05826 1.20073 1.61112 1.20567 0.90229 0.81366 0.77765 1.90698 1.62643 1.44058 1.41192 1.20716 0.93041 0.97046 1.03807 1.19040 0.99252 0.94215 0.92477 1.20687 0.99579 0.92162 0.99896 1.20779 0.99714 0.97340 0.95300 1.21001 1.00293 0.97547 0.93723 1.18041 1.00267 0.92969 0.93825 1.20997 1.00383 0.98848 0.92460 1.20858 0.99832 0.92788 0.99951 1.20881 0.99403 0.97791 0.95289 1.21065 0.99134 0.97908 0.93923 1.17841 0.99397 0.93257 0.92848 0.92332 0.93710 0.93712 0.84731 0.86135 0.86191 0.83992 0.74890 0.87287 0.87190 0.85977 0.85921 0.85694 0.85695 0.86036 0.85874 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -13.87 9.13 -34.44 -0.31 -14.18 16 8 H 0.07 1.82 7.71 -52.49 -0.40 1.41 16 9 C 0.08 1.92 4.09 36.01 0.15 2.07 16 10 S -0.17 -3.50 20.55 -107.50 -2.21 -5.71 16 11 C -0.10 -1.81 6.12 -38.90 -0.24 -2.05 16 12 C -0.11 -2.11 9.36 -39.39 -0.37 -2.48 16 13 C -0.12 -1.87 10.04 -39.58 -0.40 -2.26 16 14 C -0.12 -1.82 10.04 -39.55 -0.40 -2.22 16 15 C -0.12 -1.92 8.72 -39.42 -0.34 -2.26 16 16 C 0.15 2.57 6.44 -83.43 -0.54 2.03 16 17 N -0.66 -9.41 5.17 -9.71 -0.05 -9.46 16 18 C 0.51 6.89 7.63 -10.99 -0.08 6.80 16 19 O -0.51 -8.49 13.21 5.54 0.07 -8.42 16 20 C -0.11 -1.03 5.23 -29.04 -0.15 -1.18 16 21 C -0.05 -0.55 4.38 -104.53 -0.46 -1.00 16 22 C -0.11 -1.04 9.57 -39.93 -0.38 -1.42 16 23 C -0.11 -1.02 9.95 -39.93 -0.40 -1.42 16 24 C -0.11 -1.01 9.77 -39.49 -0.39 -1.39 16 25 C -0.05 -0.57 5.74 -106.83 -0.61 -1.18 16 26 C -0.11 -1.04 9.77 -39.48 -0.39 -1.43 16 27 C -0.12 -1.09 9.95 -39.92 -0.40 -1.49 16 28 C -0.12 -1.20 9.95 -39.92 -0.40 -1.60 16 29 C -0.10 -1.19 9.28 -39.48 -0.37 -1.56 16 30 C -0.03 -0.40 5.74 -106.83 -0.61 -1.01 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.04 1.16 7.75 -51.93 -0.40 0.76 16 33 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 34 H 0.13 2.63 5.88 -52.49 -0.31 2.32 16 35 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.14 2.30 5.79 -52.48 -0.30 2.00 16 38 H 0.41 5.29 7.65 -40.82 -0.31 4.97 16 39 H 0.11 0.89 6.71 -51.92 -0.35 0.54 16 40 H 0.11 0.77 8.04 -51.93 -0.42 0.35 16 41 H 0.12 0.96 8.04 -52.49 -0.42 0.54 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.12 1.35 6.49 -52.49 -0.34 1.01 16 LS Contribution 405.94 15.07 6.12 6.12 Total: -1.00 -31.77 405.94 -13.29 -45.06 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.76 Total: 8.52 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -7.18 Total: -27.50 kcal Atomic # 7 Polarization: -34.25 SS G_CDS: 0.69 Total: -33.57 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.42 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.21 Total: -5.71 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.77 -13.29 -45.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.003 kcal (2) G-P(sol) polarization free energy of solvation -31.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds