Wall clock time and date at job start Tue Mar 31 2020 05:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99914 * 2 1 4 4 H 1.48490 * 109.47218 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46895 * 300.00163 * 3 2 1 6 6 H 1.48507 * 109.46800 * 59.99806 * 3 2 1 7 7 C 1.37873 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00093 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47411 * 180.02562 * 9 7 2 11 11 C 1.76198 * 103.00125 * 179.97438 * 10 9 7 12 12 C 1.38782 * 120.10682 * 359.95629 * 11 10 9 13 13 C 1.38191 * 119.99201 * 180.02562 * 12 11 10 14 14 C 1.38304 * 120.20073 * 359.97438 * 13 12 11 15 15 C 1.38254 * 120.20737 * 0.02728 * 14 13 12 16 16 C 1.38648 * 120.00935 * 359.97261 * 15 14 13 17 17 N 1.40134 * 120.10201 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00068 * 24.81560 * 17 16 15 19 19 O 1.21297 * 119.99760 * 5.53391 * 18 17 16 20 20 C 1.50694 * 120.00342 * 185.53129 * 18 17 16 21 21 O 1.42901 * 109.47439 * 180.02562 * 20 18 17 22 22 C 1.35894 * 117.00177 * 179.97438 * 21 20 18 23 23 C 1.38760 * 120.05120 * 359.72569 * 22 21 20 24 24 C 1.38130 * 119.97155 * 179.74769 * 23 22 21 25 25 C 1.38265 * 120.06807 * 0.54548 * 24 23 22 26 26 C 1.38363 * 120.09622 * 359.70748 * 25 24 23 27 27 Cl 1.73605 * 119.98398 * 180.02562 * 26 25 24 28 28 C 1.38280 * 120.03164 * 0.02562 * 26 25 24 29 29 H 0.96998 * 119.99750 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47597 * 60.00006 * 9 7 2 31 31 H 1.09002 * 109.47181 * 299.99979 * 9 7 2 32 32 H 1.08006 * 120.00413 * 359.97438 * 12 11 10 33 33 H 1.08001 * 119.90603 * 180.27597 * 13 12 11 34 34 H 1.07995 * 119.89742 * 180.02562 * 14 13 12 35 35 H 1.08003 * 119.99544 * 180.02562 * 15 14 13 36 36 H 0.97000 * 120.00215 * 204.82117 * 17 16 15 37 37 H 1.09003 * 109.47333 * 300.00350 * 20 18 17 38 38 H 1.09001 * 109.47396 * 60.00192 * 20 18 17 39 39 H 1.08005 * 120.01609 * 0.02562 * 23 22 21 40 40 H 1.08004 * 119.96810 * 180.25165 * 24 23 22 41 41 H 1.08002 * 119.95285 * 179.71958 * 25 24 23 42 42 H 1.07998 * 120.03168 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 16 2.4300 -3.8778 0.0021 11 6 1.3827 -5.2948 0.0027 12 6 0.0034 -5.1410 0.0029 13 6 -0.8157 -6.2539 0.0039 14 6 -0.2655 -7.5228 0.0041 15 6 1.1075 -7.6856 0.0040 16 6 1.9374 -6.5750 0.0030 17 7 3.3293 -6.7378 0.0022 18 6 3.8753 -7.8685 -0.4874 19 8 3.1713 -8.7014 -1.0184 20 6 5.3604 -8.0981 -0.3753 21 8 5.6936 -9.3572 -0.9634 22 6 7.0034 -9.7190 -0.9460 23 6 7.9495 -8.8767 -0.3796 24 6 9.2797 -9.2484 -0.3582 25 6 9.6711 -10.4539 -0.9107 26 6 8.7308 -11.2936 -1.4809 27 17 9.2253 -12.8069 -2.1732 28 6 7.3973 -10.9280 -1.4997 29 1 -0.4850 0.8400 0.0004 30 1 0.6249 -2.5571 -0.8897 31 1 0.6242 -2.5567 0.8903 32 1 -0.4297 -4.1516 0.0031 33 1 -1.8889 -6.1327 -0.0005 34 1 -0.9102 -8.3892 0.0045 35 1 1.5335 -8.6780 0.0037 36 1 3.8998 -6.0367 0.3542 37 1 5.8916 -7.3019 -0.8968 38 1 5.6495 -8.0999 0.6757 39 1 7.6454 -7.9328 0.0484 40 1 10.0155 -8.5946 0.0864 41 1 10.7122 -10.7407 -0.8969 42 1 6.6633 -11.5836 -1.9444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:20 Heat of formation + Delta-G solvation = -25.931150 kcal Electronic energy + Delta-G solvation = -27111.530514 eV Core-core repulsion = 22981.009464 eV Total energy + Delta-G solvation = -4130.521049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 377.064 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99257 -40.20755 -38.46349 -37.74650 -36.65552 -34.84659 -33.33652 -31.65215 -30.86567 -30.71911 -29.96071 -28.68387 -27.96692 -23.77652 -23.34891 -22.99509 -22.78097 -21.96073 -20.44200 -18.95584 -18.25791 -17.24106 -16.91296 -16.78233 -16.44799 -16.35078 -16.19565 -15.35928 -15.11892 -15.03803 -14.71846 -14.36933 -14.18654 -14.06804 -13.70923 -13.47946 -13.23574 -13.09074 -13.03116 -12.45789 -12.37671 -12.33635 -12.16437 -11.87387 -11.70212 -11.37117 -11.34535 -11.28272 -11.03243 -10.82383 -10.54217 -10.17082 -9.82434 -9.75739 -9.33546 -9.31492 -9.25389 -8.75633 -8.71931 -8.11629 -6.69816 -6.34879 -4.41111 0.63854 0.85991 1.36813 1.56157 1.60513 2.14268 2.36558 2.40878 3.14682 3.15402 3.23326 3.27145 3.30121 3.51297 4.00645 4.15437 4.22304 4.34443 4.46061 4.57147 4.61206 4.62633 4.78109 4.93239 5.02973 5.18307 5.26758 5.32460 5.48651 5.64910 5.67510 5.72432 5.78208 5.84425 6.00689 6.10294 6.34488 6.45506 6.60596 6.78018 6.80934 6.85900 6.89441 7.19083 7.26853 7.57516 7.79984 7.88230 8.59942 9.23491 10.76217 Molecular weight = 377.06amu Principal moments of inertia in cm(-1) A = 0.011355 B = 0.001717 C = 0.001508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.276443 B =16302.296695 C =18558.997282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.078 3.922 10 S -0.172 6.172 11 C -0.094 4.094 12 C -0.114 4.114 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.117 4.117 16 C 0.148 3.852 17 N -0.654 5.654 18 C 0.515 3.485 19 O -0.499 6.499 20 C 0.042 3.958 21 O -0.284 6.284 22 C 0.145 3.855 23 C -0.206 4.206 24 C -0.065 4.065 25 C -0.150 4.150 26 C 0.004 3.996 27 Cl -0.062 7.062 28 C -0.142 4.142 29 H 0.267 0.733 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.415 0.585 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.671 -19.974 0.960 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.560 4.560 8 H 0.087 0.913 9 C -0.069 4.069 10 S 0.074 5.926 11 C -0.209 4.209 12 C -0.139 4.139 13 C -0.136 4.136 14 C -0.143 4.143 15 C -0.138 4.138 16 C 0.048 3.952 17 N -0.300 5.300 18 C 0.301 3.699 19 O -0.372 6.372 20 C -0.037 4.037 21 O -0.196 6.196 22 C 0.099 3.901 23 C -0.225 4.225 24 C -0.083 4.083 25 C -0.169 4.169 26 C -0.023 4.023 27 Cl -0.033 7.033 28 C -0.162 4.162 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.161 0.839 36 H 0.253 0.747 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.203 -20.530 0.438 25.551 hybrid contribution -0.649 1.347 0.200 1.508 sum 14.554 -19.184 0.638 24.088 Atomic orbital electron populations 1.69947 1.06152 1.27565 1.48831 1.24953 0.95007 0.99351 0.94316 0.86265 0.79989 0.82335 0.77891 1.19399 1.20607 1.20609 1.20632 0.93472 0.88470 1.53403 0.91293 1.21386 0.94080 0.90382 1.01007 1.84962 1.18546 0.98338 1.90725 1.21796 0.97518 0.95936 1.05642 1.21240 0.91498 1.00127 1.01017 1.21064 0.99619 0.92256 1.00619 1.20961 0.94348 0.97128 1.01846 1.21209 0.93163 0.98256 1.01172 1.17137 0.81642 0.92362 1.04037 1.43261 1.06179 1.19499 1.61088 1.19988 0.89208 0.82079 0.78635 1.90727 1.62180 1.43822 1.40514 1.22492 0.94175 0.86506 1.00537 1.86151 1.21925 1.36059 1.75450 1.18783 0.82869 0.93382 0.95040 1.21441 0.93939 1.01394 1.05745 1.20926 0.95398 0.95385 0.96586 1.20995 0.99607 0.94787 1.01482 1.20566 0.93408 0.88947 0.99337 1.98389 1.91397 1.30465 1.83056 1.20216 0.94912 0.96466 1.04556 0.92294 0.93626 0.93643 0.84598 0.85986 0.85997 0.83926 0.74715 0.88102 0.88167 0.84496 0.84481 0.84690 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 13.29 55.43 0.74 -23.74 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.91 20.23 29.54 -169.99 -5.02 15.21 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.52 -13.65 9.13 -34.44 -0.31 -13.96 16 8 H 0.07 1.79 7.71 -52.48 -0.40 1.38 16 9 C 0.08 1.88 4.09 36.00 0.15 2.03 16 10 S -0.17 -3.38 20.55 -107.50 -2.21 -5.59 16 11 C -0.09 -1.69 6.12 -38.90 -0.24 -1.93 16 12 C -0.11 -2.02 9.36 -39.40 -0.37 -2.39 16 13 C -0.12 -1.73 10.04 -39.57 -0.40 -2.13 16 14 C -0.12 -1.73 10.04 -39.55 -0.40 -2.13 16 15 C -0.12 -1.82 8.72 -39.42 -0.34 -2.16 16 16 C 0.15 2.41 6.44 -83.43 -0.54 1.88 16 17 N -0.65 -8.73 5.17 -9.71 -0.05 -8.78 16 18 C 0.52 6.64 7.71 -10.99 -0.08 6.55 16 19 O -0.50 -8.22 13.67 -14.37 -0.20 -8.41 16 20 C 0.04 0.37 5.22 36.00 0.19 0.56 16 21 O -0.28 -3.17 9.67 -39.32 -0.38 -3.55 16 22 C 0.15 1.38 6.69 -39.22 -0.26 1.12 16 23 C -0.21 -1.50 9.04 -39.43 -0.36 -1.86 16 24 C -0.06 -0.41 10.04 -39.61 -0.40 -0.81 16 25 C -0.15 -1.05 9.83 -39.53 -0.39 -1.44 16 26 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 16 27 Cl -0.06 -0.49 28.95 -51.86 -1.50 -2.00 16 28 C -0.14 -1.33 9.77 -39.40 -0.38 -1.72 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.05 1.16 7.75 -51.92 -0.40 0.75 16 31 H 0.05 1.14 7.75 -51.92 -0.40 0.74 16 32 H 0.14 2.56 5.88 -52.48 -0.31 2.25 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.14 2.21 5.79 -52.48 -0.30 1.91 16 36 H 0.42 4.79 7.65 -40.82 -0.31 4.47 16 37 H 0.10 0.67 7.65 -51.93 -0.40 0.27 16 38 H 0.10 0.59 7.67 -51.93 -0.40 0.20 16 39 H 0.14 0.70 6.30 -52.48 -0.33 0.37 16 40 H 0.14 0.52 8.06 -52.48 -0.42 0.10 16 41 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 42 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -30.91 388.92 -11.75 -42.66 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.51 Total: 5.22 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -4.48 Total: -16.88 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.69 Total: -32.52 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.58 Total: -11.96 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.21 Total: -5.59 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.91 -11.75 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.730 kcal (2) G-P(sol) polarization free energy of solvation -30.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds