Wall clock time and date at job start Tue Mar 31 2020 05:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00033 * 2 1 4 4 H 1.48503 * 109.46862 * 269.99845 * 3 2 1 5 5 H 1.48492 * 109.47182 * 29.99922 * 3 2 1 6 6 H 1.48503 * 109.47076 * 149.99898 * 3 2 1 7 7 C 1.37883 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99925 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99436 * 359.97438 * 7 2 1 10 10 S 1.81404 * 109.46592 * 180.02562 * 9 7 2 11 11 C 1.76203 * 102.99939 * 180.02562 * 10 9 7 12 12 C 1.38792 * 120.10357 * 359.97438 * 11 10 9 13 13 C 1.38195 * 119.98865 * 180.02562 * 12 11 10 14 14 C 1.38301 * 120.19835 * 0.02562 * 13 12 11 15 15 C 1.38248 * 120.21159 * 359.97438 * 14 13 12 16 16 C 1.38648 * 120.00804 * 0.02562 * 15 14 13 17 17 N 1.40146 * 120.09782 * 179.97438 * 16 15 14 18 18 C 1.34771 * 120.00216 * 24.80740 * 17 16 15 19 19 O 1.21298 * 119.99946 * 5.52654 * 18 17 16 20 20 C 1.50691 * 120.00335 * 185.52710 * 18 17 16 21 21 O 1.42897 * 109.47397 * 179.97438 * 20 18 17 22 22 C 1.35929 * 117.00189 * 180.02562 * 21 20 18 23 23 C 1.38720 * 120.03876 * 359.71804 * 22 21 20 24 24 C 1.38150 * 119.95701 * 179.79282 * 23 22 21 25 25 C 1.38368 * 120.03654 * 0.46574 * 24 23 22 26 26 Cl 1.73606 * 119.95561 * 179.76369 * 25 24 23 27 27 C 1.38367 * 120.09053 * 359.79148 * 25 24 23 28 28 C 1.38144 * 120.03999 * 359.97406 * 27 25 24 29 29 H 0.96999 * 119.99606 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47110 * 60.00850 * 9 7 2 31 31 H 1.09003 * 109.47645 * 299.99883 * 9 7 2 32 32 H 1.08003 * 120.00012 * 0.02562 * 12 11 10 33 33 H 1.07999 * 119.89990 * 180.02562 * 13 12 11 34 34 H 1.08004 * 119.89447 * 180.02562 * 14 13 12 35 35 H 1.08001 * 119.99264 * 179.72588 * 15 14 13 36 36 H 0.97003 * 119.99893 * 204.80005 * 17 16 15 37 37 H 1.09000 * 109.47236 * 300.00267 * 20 18 17 38 38 H 1.09009 * 109.46852 * 60.00170 * 20 18 17 39 39 H 1.08001 * 120.02352 * 0.03123 * 23 22 21 40 40 H 1.07992 * 119.98147 * 180.23479 * 24 23 22 41 41 H 1.08003 * 119.97980 * 179.97438 * 27 25 24 42 42 H 1.07998 * 120.02133 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 16 2.4298 -3.8779 0.0029 11 6 1.3825 -5.2949 0.0034 12 6 0.0031 -5.1410 0.0034 13 6 -0.8161 -6.2539 0.0043 14 6 -0.2658 -7.5227 0.0058 15 6 1.1070 -7.6856 0.0059 16 6 1.9370 -6.5750 0.0049 17 7 3.3290 -6.7380 0.0055 18 6 3.8753 -7.8691 -0.4828 19 8 3.1716 -8.7023 -1.0137 20 6 5.3603 -8.0987 -0.3693 21 8 5.6937 -9.3586 -0.9552 22 6 7.0036 -9.7212 -0.9355 23 6 7.9488 -8.8785 -0.3691 24 6 9.2791 -9.2506 -0.3461 25 6 9.6701 -10.4585 -0.8961 26 17 11.3432 -10.9212 -0.8715 27 6 8.7294 -11.2980 -1.4663 28 6 7.3976 -10.9316 -1.4869 29 1 -0.4849 0.8401 -0.0004 30 1 0.6241 -2.5575 -0.8880 31 1 0.6246 -2.5563 0.8920 32 1 -0.4299 -4.1515 0.0027 33 1 -1.8893 -6.1325 0.0039 34 1 -0.9107 -8.3891 0.0061 35 1 1.5329 -8.6781 0.0115 36 1 3.8993 -6.0365 0.3573 37 1 5.8919 -7.3029 -0.8911 38 1 5.6485 -8.0996 0.6820 39 1 7.6445 -7.9339 0.0571 40 1 10.0147 -8.5966 0.0982 41 1 9.0366 -12.2402 -1.8955 42 1 6.6638 -11.5868 -1.9323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:24 Heat of formation + Delta-G solvation = -26.585084 kcal Electronic energy + Delta-G solvation = -27074.006615 eV Core-core repulsion = 22943.457209 eV Total energy + Delta-G solvation = -4130.549406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 377.064 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99528 -40.21102 -38.46628 -37.75027 -36.53842 -34.84979 -33.33529 -31.76820 -30.90959 -30.76957 -29.80406 -28.68282 -27.93345 -23.82733 -23.42051 -22.92741 -22.74423 -21.98101 -20.45300 -18.90886 -18.26819 -17.23679 -17.07194 -16.79754 -16.61362 -16.35028 -16.16531 -15.15091 -15.05467 -14.97551 -14.71050 -14.36425 -14.12314 -14.03155 -13.71496 -13.47700 -13.22878 -13.09714 -13.03960 -12.65957 -12.45156 -12.39580 -12.19594 -11.87919 -11.74355 -11.32944 -11.18129 -11.13903 -11.01423 -10.83530 -10.54506 -10.16963 -9.83361 -9.77258 -9.60953 -9.31822 -9.25698 -8.71379 -8.59908 -8.12016 -6.70082 -6.34649 -4.40957 0.72520 0.76594 1.36537 1.60022 1.75270 2.08399 2.34601 2.39986 3.14007 3.16744 3.23239 3.26188 3.27876 3.50830 4.00235 4.13985 4.22442 4.29587 4.35764 4.51805 4.60186 4.67951 4.86137 5.00788 5.03109 5.17868 5.26287 5.42326 5.46945 5.48925 5.67132 5.72034 5.73590 5.77612 6.04884 6.09920 6.34062 6.44965 6.60150 6.77538 6.80339 6.85905 6.89308 7.18601 7.26434 7.57404 7.80074 7.87726 8.59785 9.23540 10.76373 Molecular weight = 377.06amu Principal moments of inertia in cm(-1) A = 0.009798 B = 0.001748 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.899592 B =16010.740724 C =18736.648473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.521 4.521 8 H 0.068 0.932 9 C 0.079 3.921 10 S -0.172 6.172 11 C -0.093 4.093 12 C -0.114 4.114 13 C -0.115 4.115 14 C -0.121 4.121 15 C -0.116 4.116 16 C 0.148 3.852 17 N -0.654 5.654 18 C 0.515 3.485 19 O -0.499 6.499 20 C 0.040 3.960 21 O -0.284 6.284 22 C 0.138 3.862 23 C -0.199 4.199 24 C -0.067 4.067 25 C -0.075 4.075 26 Cl -0.073 7.073 27 C -0.069 4.069 28 C -0.136 4.136 29 H 0.268 0.732 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.136 0.864 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.416 0.584 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.087 -20.380 0.685 24.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.560 4.560 8 H 0.086 0.914 9 C -0.068 4.068 10 S 0.074 5.926 11 C -0.209 4.209 12 C -0.139 4.139 13 C -0.135 4.135 14 C -0.143 4.143 15 C -0.138 4.138 16 C 0.048 3.952 17 N -0.300 5.300 18 C 0.301 3.699 19 O -0.373 6.373 20 C -0.038 4.038 21 O -0.196 6.196 22 C 0.092 3.908 23 C -0.218 4.218 24 C -0.086 4.086 25 C -0.101 4.101 26 Cl -0.044 7.044 27 C -0.088 4.088 28 C -0.154 4.154 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.160 0.840 36 H 0.253 0.747 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.159 0.841 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 14.722 -20.835 0.237 25.512 hybrid contribution -0.504 1.470 0.277 1.579 sum 14.218 -19.365 0.514 24.029 Atomic orbital electron populations 1.69937 1.06151 1.27671 1.48727 1.24953 0.95010 0.99342 0.94306 0.86316 0.79693 0.81999 0.78459 1.20236 1.20850 1.19510 1.20590 0.93432 0.88480 1.53544 0.91350 1.21381 0.94068 0.90360 1.00999 1.84969 1.18550 0.98345 1.90711 1.21798 0.97521 0.95941 1.05620 1.21245 0.91497 1.00131 1.01015 1.21063 0.99619 0.92254 1.00609 1.20959 0.94346 0.97128 1.01869 1.21197 0.93155 0.98234 1.01179 1.17137 0.81643 0.92366 1.04051 1.43268 1.06185 1.19469 1.61109 1.19987 0.89207 0.82076 0.78622 1.90726 1.62212 1.43820 1.40538 1.22495 0.94181 0.86580 1.00572 1.86170 1.22101 1.35897 1.75433 1.19124 0.82716 0.93983 0.95016 1.21282 0.93055 1.01505 1.05950 1.20861 0.95850 0.94652 0.97230 1.20813 0.85734 0.97257 1.06345 1.98371 1.16224 1.92276 1.97550 1.20880 0.91122 0.99327 0.97486 1.20418 0.95909 0.95701 1.03420 0.92240 0.93629 0.93647 0.84595 0.85985 0.85998 0.83952 0.74710 0.88114 0.88192 0.84225 0.84462 0.84136 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.47 13.29 55.43 0.74 -23.74 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.52 -13.67 9.13 -34.44 -0.31 -13.99 16 8 H 0.07 1.77 7.71 -52.49 -0.40 1.36 16 9 C 0.08 1.89 4.09 36.01 0.15 2.04 16 10 S -0.17 -3.38 20.55 -107.50 -2.21 -5.59 16 11 C -0.09 -1.69 6.12 -38.90 -0.24 -1.92 16 12 C -0.11 -2.01 9.36 -39.39 -0.37 -2.38 16 13 C -0.11 -1.72 10.04 -39.57 -0.40 -2.12 16 14 C -0.12 -1.72 10.04 -39.55 -0.40 -2.12 16 15 C -0.12 -1.80 8.71 -39.43 -0.34 -2.14 16 16 C 0.15 2.40 6.44 -83.43 -0.54 1.86 16 17 N -0.65 -8.70 5.17 -9.71 -0.05 -8.75 16 18 C 0.52 6.58 7.71 -10.99 -0.08 6.49 16 19 O -0.50 -8.13 13.67 -14.37 -0.20 -8.33 16 20 C 0.04 0.35 5.22 36.00 0.19 0.54 16 21 O -0.28 -3.07 9.67 -39.43 -0.38 -3.45 16 22 C 0.14 1.25 6.69 -39.22 -0.26 0.99 16 23 C -0.20 -1.48 9.04 -39.44 -0.36 -1.84 16 24 C -0.07 -0.49 9.82 -39.57 -0.39 -0.88 16 25 C -0.07 -0.58 6.32 -39.49 -0.25 -0.83 16 26 Cl -0.07 -0.55 28.95 -51.86 -1.50 -2.05 16 27 C -0.07 -0.51 9.82 -39.57 -0.39 -0.90 16 28 C -0.14 -1.12 9.99 -39.44 -0.39 -1.51 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.05 1.15 7.75 -51.93 -0.40 0.75 16 31 H 0.05 1.14 7.75 -51.92 -0.40 0.73 16 32 H 0.14 2.55 5.88 -52.48 -0.31 2.24 16 33 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 35 H 0.14 2.19 5.80 -52.49 -0.30 1.88 16 36 H 0.42 4.78 7.65 -40.82 -0.31 4.47 16 37 H 0.10 0.66 7.65 -51.93 -0.40 0.26 16 38 H 0.10 0.59 7.67 -51.92 -0.40 0.19 16 39 H 0.14 0.74 6.30 -52.49 -0.33 0.41 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -30.81 388.92 -11.75 -42.56 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.51 Total: 5.21 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: -4.48 Total: -16.97 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.69 Total: -32.48 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.58 Total: -11.78 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.21 Total: -5.59 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.81 -11.75 -42.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.978 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds