Wall clock time and date at job start Tue Mar 31 2020 05:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00081 * 2 1 4 4 H 1.48495 * 109.47205 * 270.00380 * 3 2 1 5 5 H 1.48507 * 109.46761 * 30.00146 * 3 2 1 6 6 H 1.48496 * 109.47111 * 149.99839 * 3 2 1 7 7 C 1.37883 * 119.99880 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99925 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99436 * 179.97438 * 7 2 1 10 10 S 1.81404 * 109.46592 * 180.02562 * 9 7 2 11 11 C 1.76203 * 102.99939 * 180.02562 * 10 9 7 12 12 C 1.38792 * 120.10357 * 359.97438 * 11 10 9 13 13 C 1.38195 * 119.98865 * 180.02562 * 12 11 10 14 14 C 1.38301 * 120.19835 * 0.02562 * 13 12 11 15 15 C 1.38248 * 120.21159 * 359.97438 * 14 13 12 16 16 C 1.38648 * 120.00804 * 0.02562 * 15 14 13 17 17 N 1.40146 * 120.09782 * 179.97438 * 16 15 14 18 18 C 1.34771 * 120.00216 * 24.80740 * 17 16 15 19 19 O 1.21298 * 119.99946 * 5.52654 * 18 17 16 20 20 C 1.50691 * 120.00335 * 185.52710 * 18 17 16 21 21 S 1.81402 * 109.47591 * 179.97438 * 20 18 17 22 22 C 1.76202 * 103.00189 * 180.02562 * 21 20 18 23 23 C 1.38936 * 120.05480 * 359.72440 * 22 21 20 24 24 C 1.38094 * 119.94301 * 179.71909 * 23 22 21 25 25 C 1.38479 * 120.05663 * 0.56106 * 24 23 22 26 26 F 1.35097 * 119.94843 * 179.70216 * 25 24 23 27 27 C 1.38479 * 120.10684 * 359.71638 * 25 24 23 28 28 C 1.38101 * 120.05729 * 359.97438 * 27 25 24 29 29 H 0.96999 * 120.00414 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47110 * 60.00850 * 9 7 2 31 31 H 1.09003 * 109.47645 * 299.99883 * 9 7 2 32 32 H 1.08003 * 120.00012 * 0.02562 * 12 11 10 33 33 H 1.07999 * 119.89990 * 180.02562 * 13 12 11 34 34 H 1.08004 * 119.89447 * 180.02562 * 14 13 12 35 35 H 1.08001 * 119.99264 * 179.72588 * 15 14 13 36 36 H 0.97003 * 119.99893 * 204.80005 * 17 16 15 37 37 H 1.09000 * 109.47236 * 300.00267 * 20 18 17 38 38 H 1.09009 * 109.46852 * 60.00170 * 20 18 17 39 39 H 1.08003 * 120.02800 * 0.02562 * 23 22 21 40 40 H 1.08003 * 119.97482 * 180.25493 * 24 23 22 41 41 H 1.08007 * 119.97180 * 179.97438 * 27 25 24 42 42 H 1.07994 * 120.02715 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 16 4.1162 -2.9043 -0.0025 11 6 5.8670 -2.7057 -0.0023 12 6 6.4233 -1.4342 -0.0018 13 6 7.7968 -1.2812 -0.0021 14 6 8.6205 -2.3922 -0.0035 15 6 8.0751 -3.6625 -0.0041 16 6 6.6983 -3.8261 -0.0037 17 7 6.1435 -5.1130 -0.0048 18 6 6.8497 -6.1518 0.4836 19 8 7.9229 -5.9591 1.0149 20 6 6.3061 -7.5526 0.3696 21 16 7.4793 -8.7191 1.1135 22 6 6.6865 -10.2765 0.8887 23 6 5.4475 -10.3427 0.2634 24 6 4.8309 -11.5651 0.0832 25 6 5.4409 -12.7231 0.5354 26 9 4.8329 -13.9171 0.3633 27 6 6.6731 -12.6591 1.1641 28 6 7.2969 -11.4397 1.3410 29 1 -0.4851 0.8400 0.0004 30 1 3.8751 -0.6805 0.8889 31 1 3.8746 -0.6800 -0.8911 32 1 5.7829 -0.5645 -0.0011 33 1 8.2282 -0.2911 -0.0013 34 1 9.6932 -2.2669 -0.0034 35 1 8.7217 -4.5276 -0.0096 36 1 5.2510 -5.2561 -0.3570 37 1 5.3509 -7.6152 0.8910 38 1 6.1632 -7.8024 -0.6818 39 1 4.9694 -9.4394 -0.0858 40 1 3.8697 -11.6176 -0.4065 41 1 7.1468 -13.5636 1.5163 42 1 8.2576 -11.3903 1.8317 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:22 Heat of formation + Delta-G solvation = -23.127361 kcal Electronic energy + Delta-G solvation = -26815.130388 eV Core-core repulsion = 22699.147416 eV Total energy + Delta-G solvation = -4115.982972 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 377.066 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.26946 -40.65437 -39.24016 -38.35769 -34.95953 -33.24851 -32.07089 -31.25475 -31.02800 -30.74841 -29.47323 -28.70307 -23.77470 -23.33791 -23.21854 -22.90827 -22.15848 -20.60801 -18.69432 -18.13762 -17.67037 -17.34014 -17.03878 -16.79476 -16.60695 -16.08181 -15.95415 -15.34819 -15.06461 -14.86493 -14.61308 -14.34190 -14.21885 -13.97603 -13.75455 -13.70671 -13.52537 -13.41744 -13.24446 -12.93107 -12.61659 -12.55889 -12.54742 -11.97238 -11.60872 -11.43869 -10.96790 -10.73484 -10.65703 -10.53360 -10.36116 -10.02821 -9.99386 -9.85795 -9.66006 -9.41363 -9.37342 -8.85621 -8.24058 -7.75259 -6.83475 -6.34287 -4.39035 0.53044 0.70873 0.81656 1.25650 1.46998 1.87851 2.10687 2.30479 2.82603 3.01007 3.10170 3.16961 3.18439 3.29849 3.81866 3.88059 4.16687 4.19320 4.20759 4.35196 4.44480 4.63406 4.71885 4.84465 4.96854 5.03795 5.14222 5.20589 5.35370 5.36533 5.56304 5.58440 5.62824 5.64994 5.67187 5.96041 6.20812 6.32244 6.32416 6.34077 6.44377 6.47667 6.65023 7.05640 7.15539 7.21400 7.76772 8.10340 8.64702 9.20114 10.77215 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.011288 B = 0.001865 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.882497 B =15012.380367 C =17333.097744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.084 3.916 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.085 0.915 9 C 0.035 3.965 10 S -0.132 6.132 11 C -0.101 4.101 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.150 3.850 17 N -0.653 5.653 18 C 0.534 3.466 19 O -0.503 6.503 20 C -0.157 4.157 21 S -0.016 6.016 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.130 4.130 25 C 0.089 3.911 26 F -0.139 7.139 27 C -0.133 4.133 28 C -0.071 4.071 29 H 0.270 0.730 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.416 0.584 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.740 -19.544 -0.536 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.122 4.122 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.103 0.897 9 C -0.113 4.113 10 S 0.115 5.885 11 C -0.217 4.217 12 C -0.143 4.143 13 C -0.135 4.135 14 C -0.141 4.141 15 C -0.135 4.135 16 C 0.050 3.950 17 N -0.298 5.298 18 C 0.319 3.681 19 O -0.378 6.378 20 C -0.308 4.308 21 S 0.228 5.772 22 C -0.225 4.225 23 C -0.132 4.132 24 C -0.151 4.151 25 C 0.067 3.933 26 F -0.118 7.118 27 C -0.154 4.154 28 C -0.095 4.095 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.162 0.838 36 H 0.254 0.746 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.159 0.841 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 16.560 -19.981 0.338 25.953 hybrid contribution -0.966 1.535 -0.856 2.006 sum 15.593 -18.446 -0.518 24.159 Atomic orbital electron populations 1.69843 1.06152 1.27598 1.48606 1.24826 0.94773 0.98776 0.93804 0.86833 0.80407 0.83528 0.79003 1.19662 1.20560 1.18922 1.20370 0.86412 0.95508 1.53890 0.89705 1.21733 1.01401 0.88189 0.99991 1.85092 0.93266 1.19620 1.90566 1.21899 0.99149 0.94833 1.05796 1.21141 0.95735 0.95608 1.01815 1.21048 0.93072 0.98787 1.00632 1.20967 0.99603 0.91896 1.01655 1.21222 0.92729 0.98705 1.00843 1.17142 0.91920 0.82206 1.03746 1.43350 1.20049 1.05612 1.60787 1.19551 0.85174 0.85207 0.78169 1.90732 1.21261 1.84601 1.41250 1.23851 1.04366 0.95448 1.07157 1.86246 1.24979 0.92738 1.73228 1.22171 0.98386 0.98877 1.03085 1.21083 0.94163 0.98187 0.99788 1.21089 1.01278 0.91153 1.01565 1.17702 0.93016 0.80927 1.01611 1.91512 1.82833 1.43845 1.93591 1.21096 0.94385 0.99136 1.00739 1.20587 1.00056 0.89738 0.99107 0.91962 0.93741 0.94241 0.85219 0.86001 0.85880 0.83765 0.74595 0.85713 0.85815 0.84772 0.84219 0.84145 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 3 Si 0.88 19.90 27.47 -169.99 -4.67 15.23 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 6 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 7 C -0.52 -13.95 9.68 -34.44 -0.33 -14.28 16 8 H 0.09 2.46 7.96 -52.49 -0.42 2.05 16 9 C 0.03 0.77 3.16 36.01 0.11 0.89 16 10 S -0.13 -2.51 20.55 -107.50 -2.21 -4.72 16 11 C -0.10 -1.72 6.12 -38.90 -0.24 -1.96 16 12 C -0.12 -1.93 9.36 -39.39 -0.37 -2.30 16 13 C -0.11 -1.58 10.04 -39.57 -0.40 -1.98 16 14 C -0.12 -1.57 10.04 -39.55 -0.40 -1.97 16 15 C -0.11 -1.64 8.71 -39.43 -0.34 -1.98 16 16 C 0.15 2.30 6.44 -83.43 -0.54 1.76 16 17 N -0.65 -8.25 5.17 -9.71 -0.05 -8.30 16 18 C 0.53 6.31 7.66 -10.99 -0.08 6.23 16 19 O -0.50 -7.41 13.04 5.54 0.07 -7.34 16 20 C -0.16 -1.27 4.82 36.00 0.17 -1.09 16 21 S -0.02 -0.15 21.06 -107.50 -2.26 -2.41 16 22 C -0.11 -0.92 6.11 -39.06 -0.24 -1.15 16 23 C -0.11 -0.79 9.36 -39.38 -0.37 -1.16 16 24 C -0.13 -0.97 10.02 -39.55 -0.40 -1.36 16 25 C 0.09 0.73 7.30 -39.40 -0.29 0.44 16 26 F -0.14 -1.26 17.26 2.25 0.04 -1.22 16 27 C -0.13 -0.94 10.02 -39.54 -0.40 -1.34 16 28 C -0.07 -0.52 9.79 -39.37 -0.39 -0.91 16 29 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.04 0.99 6.81 -51.93 -0.35 0.64 16 31 H 0.04 0.86 7.18 -51.92 -0.37 0.49 16 32 H 0.13 2.18 5.88 -52.48 -0.31 1.87 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 35 H 0.14 2.05 5.80 -52.49 -0.30 1.75 16 36 H 0.42 4.65 7.65 -40.82 -0.31 4.33 16 37 H 0.12 0.79 7.74 -51.92 -0.40 0.39 16 38 H 0.12 0.70 7.76 -51.92 -0.40 0.30 16 39 H 0.13 0.73 5.88 -52.48 -0.31 0.42 16 40 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 41 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -31.07 384.60 -11.56 -42.63 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.46 Total: 5.09 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -4.58 Total: -19.99 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.72 Total: -33.06 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.07 Total: -7.34 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.67 Total: 15.23 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -4.47 Total: -7.13 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.07 -11.56 -42.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.502 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds