Wall clock time and date at job start Tue Mar 31 2020 05:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39263 * 119.77916 * 2 1 4 4 C 1.38159 * 119.01349 * 180.20536 * 3 2 1 5 5 N 1.37715 * 120.64215 * 179.81101 * 4 3 2 6 6 C 1.46495 * 119.99776 * 359.72417 * 5 4 3 7 7 H 1.08992 * 109.47897 * 324.99693 * 6 5 4 8 8 C 1.50702 * 109.47377 * 85.00043 * 6 5 4 9 9 H 1.08003 * 120.00033 * 33.25517 * 8 6 5 10 10 C 1.37875 * 119.99997 * 213.26588 * 8 6 5 11 11 N 1.31514 * 120.00413 * 352.82396 * 10 8 6 12 12 Si 1.86802 * 120.00083 * 172.82399 * 10 8 6 13 13 H 1.48504 * 109.46992 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47312 * 119.99531 * 12 10 8 15 15 H 1.48496 * 109.47259 * 240.00108 * 12 10 8 16 16 C 1.50706 * 109.47042 * 204.99383 * 6 5 4 17 17 C 1.38230 * 119.99975 * 313.25810 * 16 6 5 18 18 C 1.38231 * 119.99882 * 179.78460 * 17 16 6 19 19 C 1.38241 * 120.00267 * 0.44346 * 18 17 16 20 20 C 1.38230 * 119.99613 * 359.81133 * 19 18 17 21 21 C 1.38236 * 119.99682 * 133.52666 * 16 6 5 22 22 N 1.36503 * 118.71306 * 359.54211 * 4 3 2 23 23 N 1.40069 * 133.37908 * 180.25184 * 22 4 3 24 24 C 1.31068 * 107.04028 * 179.97438 * 23 22 4 25 25 C 1.50694 * 125.18593 * 180.02562 * 24 23 22 26 26 F 1.39904 * 109.47059 * 194.98438 * 25 24 23 27 27 F 1.39900 * 109.47310 * 314.97829 * 25 24 23 28 28 F 1.39897 * 109.47189 * 74.98341 * 25 24 23 29 29 N 1.32727 * 109.62809 * 359.97438 * 24 23 22 30 30 C 1.32858 * 109.73961 * 0.02562 * 29 24 23 31 31 N 1.31650 * 119.78703 * 179.75559 * 2 1 3 32 32 H 1.08999 * 109.47310 * 270.23651 * 1 2 3 33 33 H 1.08999 * 109.47455 * 30.24440 * 1 2 3 34 34 H 1.09010 * 109.46732 * 150.24070 * 1 2 3 35 35 H 1.08000 * 120.49237 * 359.97438 * 3 2 1 36 36 H 0.96998 * 119.99859 * 179.71896 * 5 4 3 37 37 H 0.97007 * 119.99259 * 4.54668 * 11 10 8 38 38 H 1.08000 * 120.00182 * 359.97438 * 17 16 6 39 39 H 1.08007 * 120.00044 * 180.27158 * 18 17 16 40 40 H 1.07991 * 120.00290 * 179.83658 * 19 18 17 41 41 H 1.07997 * 120.00106 * 180.02562 * 20 19 18 42 42 H 1.07997 * 120.00298 * 359.97438 * 21 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.2087 0.0000 4 6 3.5801 1.1903 -0.0043 5 7 4.2977 2.3656 -0.0084 6 6 3.5966 3.6519 -0.0142 7 1 2.6842 3.5658 -0.6042 8 6 3.2461 4.0394 1.3993 9 1 3.9018 3.7658 2.2127 10 6 2.0882 4.7432 1.6542 11 7 1.3623 5.1987 0.6566 12 14 1.5503 5.0498 3.4166 13 1 2.5324 4.4380 4.3474 14 1 1.4772 6.5122 3.6646 15 1 0.2136 4.4425 3.6390 16 6 4.4875 4.7069 -0.6180 17 6 5.8066 4.8093 -0.2178 18 6 6.6249 5.7741 -0.7748 19 6 6.1217 6.6425 -1.7254 20 6 4.8011 6.5435 -2.1217 21 6 3.9839 5.5758 -1.5679 22 7 4.2198 -0.0155 0.0011 23 7 5.5700 -0.3882 0.0035 24 6 5.6069 -1.6984 0.0096 25 6 6.8624 -2.5318 0.0146 26 9 6.5466 -3.8528 -0.3207 27 9 7.7675 -2.0172 -0.9198 28 9 7.4386 -2.4991 1.2890 29 7 4.3697 -2.1792 0.0117 30 6 3.4985 -1.1761 0.0064 31 7 2.1610 -1.1425 0.0049 32 1 -0.3634 0.0042 1.0276 33 1 -0.3634 0.8878 -0.5176 34 1 -0.3633 -0.8922 -0.5101 35 1 1.6630 2.1466 -0.0004 36 1 5.2674 2.3418 -0.0073 37 1 1.6052 4.9836 -0.2576 38 1 6.1987 4.1335 0.5278 39 1 7.6568 5.8512 -0.4654 40 1 6.7603 7.3979 -2.1587 41 1 4.4080 7.2216 -2.8646 42 1 2.9522 5.4983 -1.8777 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095964650.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:41 Heat of formation + Delta-G solvation = 11.324682 kcal Electronic energy + Delta-G solvation = -34263.466447 eV Core-core repulsion = 29216.969673 eV Total energy + Delta-G solvation = -5046.496775 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.116 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -50.31427 -47.85160 -47.79210 -42.81251 -39.43281 -38.67818 -36.71717 -34.41013 -32.79224 -32.17291 -30.98513 -30.52103 -29.61619 -28.86594 -27.05269 -26.52138 -23.97703 -23.17275 -22.58169 -22.01229 -21.34331 -20.69094 -18.92088 -18.86792 -18.74275 -18.06244 -17.59877 -17.27640 -16.54296 -16.43806 -16.06055 -15.02449 -14.79406 -14.68075 -14.59499 -14.37486 -14.21845 -14.13473 -13.93485 -13.92438 -13.79023 -13.70420 -13.69784 -13.04278 -12.94546 -12.87609 -12.69804 -12.49615 -12.35352 -12.19109 -12.11488 -11.74916 -11.21327 -11.13300 -10.77736 -10.55068 -10.40798 -10.29399 -10.25785 -9.73512 -9.51959 -9.18544 -8.95850 -8.53792 -8.20850 -7.57387 -6.89625 -4.70798 0.82522 0.89994 1.51425 1.77979 1.78895 2.24504 2.30436 3.10954 3.16860 3.20261 3.21789 3.35270 3.61204 3.72750 4.01891 4.09880 4.17791 4.25137 4.47701 4.77935 4.82317 5.23093 5.27298 5.33146 5.38284 5.50268 5.53823 5.63031 5.65828 5.74014 5.82706 5.86495 5.94449 6.00828 6.06485 6.14495 6.36049 6.42963 6.53027 6.81437 6.84555 6.92955 7.16904 7.27914 7.41491 7.45484 7.76065 7.90333 7.99220 8.24331 8.96794 10.42645 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.008124 B = 0.003394 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3445.699379 B = 8248.568089 C =10172.972810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.265 3.735 3 C -0.303 4.303 4 C 0.501 3.499 5 N -0.672 5.672 6 C 0.280 3.720 7 H 0.069 0.931 8 C -0.601 4.601 9 H 0.064 0.936 10 C 0.039 3.961 11 N -0.881 5.881 12 Si 1.072 2.928 13 H -0.287 1.287 14 H -0.283 1.283 15 H -0.279 1.279 16 C -0.053 4.053 17 C -0.118 4.118 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.118 4.118 21 C -0.113 4.113 22 N -0.357 5.357 23 N -0.302 5.302 24 C 0.186 3.814 25 C 0.579 3.421 26 F -0.151 7.151 27 F -0.160 7.160 28 F -0.160 7.160 29 N -0.514 5.514 30 C 0.499 3.501 31 N -0.521 5.521 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.177 0.823 36 H 0.402 0.598 37 H 0.272 0.728 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 -4.456 -3.685 6.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 C -0.336 4.336 4 C 0.271 3.729 5 N -0.293 5.293 6 C 0.180 3.820 7 H 0.087 0.913 8 C -0.639 4.639 9 H 0.082 0.918 10 C -0.170 4.170 11 N -0.515 5.515 12 Si 0.899 3.101 13 H -0.213 1.213 14 H -0.209 1.209 15 H -0.205 1.205 16 C -0.055 4.055 17 C -0.137 4.137 18 C -0.139 4.139 19 C -0.159 4.159 20 C -0.136 4.136 21 C -0.131 4.131 22 N -0.144 5.144 23 N -0.135 5.135 24 C -0.100 4.100 25 C 0.521 3.479 26 F -0.132 7.132 27 F -0.141 7.141 28 F -0.142 7.142 29 N -0.251 5.251 30 C 0.139 3.861 31 N -0.247 5.247 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.194 0.806 36 H 0.238 0.762 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.714 -4.298 -2.782 5.794 hybrid contribution 2.203 0.239 -0.724 2.331 sum 4.917 -4.059 -3.505 7.276 Atomic orbital electron populations 1.20826 0.86654 1.04348 1.04360 1.21529 0.97518 0.86183 0.83590 1.21387 0.88542 1.01938 1.21741 1.18199 0.89246 0.77468 0.87944 1.45967 1.09502 1.03388 1.70482 1.18303 0.90008 0.75628 0.98097 0.91337 1.22130 1.09860 1.41359 0.90557 0.91818 1.25920 0.92565 0.92220 1.06269 1.70861 1.41683 1.38519 1.00402 0.83463 0.76355 0.77085 0.73233 1.21285 1.20873 1.20517 1.20429 0.93785 0.98350 0.92898 1.20818 0.93886 0.99186 0.99797 1.21011 0.99292 0.96048 0.97563 1.20953 0.95777 0.99972 0.99246 1.21027 0.94049 0.98355 1.00168 1.20935 0.99596 0.96074 0.96534 1.48765 1.06370 1.07848 1.51426 1.78165 0.92499 1.11848 1.31021 1.23596 0.93912 0.90481 1.02018 1.16236 0.79888 0.77237 0.74505 1.93273 1.92713 1.35127 1.92091 1.93263 1.68454 1.86868 1.65513 1.93267 1.85244 1.96280 1.39383 1.70651 0.96438 1.26405 1.31584 1.22550 0.90117 0.79882 0.93513 1.67821 1.00369 1.28464 1.28085 0.88867 0.89252 0.89690 0.80556 0.76170 0.91617 0.87042 0.86841 0.86911 0.86680 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.18 36.00 0.37 -0.80 16 2 C 0.26 4.13 6.81 -82.29 -0.56 3.57 16 3 C -0.30 -5.14 8.84 -39.23 -0.35 -5.49 16 4 C 0.50 9.20 7.73 -152.98 -1.18 8.01 16 5 N -0.67 -12.24 5.13 -55.79 -0.29 -12.53 16 6 C 0.28 5.45 1.66 -70.23 -0.12 5.34 16 7 H 0.07 1.37 4.73 -51.93 -0.25 1.13 16 8 C -0.60 -13.39 8.35 -34.44 -0.29 -13.68 16 9 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 10 C 0.04 0.89 5.45 -17.82 -0.10 0.80 16 11 N -0.88 -20.85 13.62 55.43 0.76 -20.10 16 12 Si 1.07 21.48 29.91 -169.99 -5.08 16.40 16 13 H -0.29 -5.71 7.11 56.52 0.40 -5.31 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 16 C -0.05 -0.99 4.93 -104.62 -0.52 -1.51 16 17 C -0.12 -2.06 8.91 -39.59 -0.35 -2.41 16 18 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 19 C -0.14 -2.08 10.05 -39.58 -0.40 -2.47 16 20 C -0.12 -1.83 10.05 -39.58 -0.40 -2.23 16 21 C -0.11 -1.99 9.38 -39.58 -0.37 -2.36 16 22 N -0.36 -6.81 3.93 -12.98 -0.05 -6.86 16 23 N -0.30 -5.63 12.76 32.39 0.41 -5.22 16 24 C 0.19 3.32 7.37 -157.01 -1.16 2.16 16 25 C 0.58 8.58 3.57 36.00 0.13 8.71 16 26 F -0.15 -2.16 17.15 2.25 0.04 -2.12 16 27 F -0.16 -2.24 17.30 2.25 0.04 -2.20 16 28 F -0.16 -2.29 17.30 2.25 0.04 -2.25 16 29 N -0.51 -9.99 11.05 -11.80 -0.13 -10.12 16 30 C 0.50 9.72 9.00 -323.14 -2.91 6.81 16 31 N -0.52 -9.37 10.38 -10.18 -0.11 -9.48 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 35 H 0.18 3.07 6.24 -52.49 -0.33 2.74 16 36 H 0.40 7.11 7.39 -40.82 -0.30 6.80 16 37 H 0.27 6.18 5.55 -40.82 -0.23 5.95 16 38 H 0.11 1.88 7.35 -52.49 -0.39 1.49 16 39 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 41 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.12 2.06 7.22 -52.49 -0.38 1.68 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -26.05 377.02 -10.89 -36.94 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.61 Total: 9.65 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -8.59 Total: 2.20 kcal Atomic # 7 Polarization: -64.89 SS G_CDS: 0.60 Total: -64.29 kcal Atomic # 9 Polarization: -6.69 SS G_CDS: 0.12 Total: -6.58 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.08 Total: 16.40 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -26.05 -10.89 -36.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095964650.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.265 kcal (2) G-P(sol) polarization free energy of solvation -26.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds