Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39252 * 119.78024 * 2 1 4 4 C 1.38156 * 119.01414 * 180.27076 * 3 2 1 5 5 N 1.37714 * 120.64645 * 179.74433 * 4 3 2 6 6 C 1.46496 * 119.99770 * 0.02562 * 5 4 3 7 7 H 1.08997 * 109.47360 * 34.99735 * 6 5 4 8 8 C 1.50702 * 109.47252 * 274.99586 * 6 5 4 9 9 H 1.07998 * 119.99881 * 125.37458 * 8 6 5 10 10 C 1.37878 * 120.00221 * 305.38184 * 8 6 5 11 11 N 1.31512 * 119.99751 * 9.94632 * 10 8 6 12 12 Si 1.86795 * 119.99957 * 189.95426 * 10 8 6 13 13 H 1.48497 * 109.47524 * 59.99601 * 12 10 8 14 14 H 1.48507 * 109.46810 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46953 * 299.99416 * 12 10 8 16 16 C 1.50704 * 109.47203 * 154.99801 * 6 5 4 17 17 C 1.38231 * 119.99708 * 33.34824 * 16 6 5 18 18 C 1.38239 * 119.99727 * 179.80915 * 17 16 6 19 19 C 1.38230 * 119.99838 * 0.39776 * 18 17 16 20 20 C 1.38227 * 120.00207 * 359.85933 * 19 18 17 21 21 C 1.38231 * 120.00043 * 359.94754 * 20 19 18 22 22 N 1.36518 * 118.71082 * 359.49997 * 4 3 2 23 23 N 1.40064 * 133.37400 * 180.16155 * 22 4 3 24 24 C 1.31070 * 107.03893 * 180.30726 * 23 22 4 25 25 C 1.50697 * 125.18727 * 179.97438 * 24 23 22 26 26 F 1.39908 * 109.47048 * 105.00135 * 25 24 23 27 27 F 1.39904 * 109.47146 * 224.99748 * 25 24 23 28 28 F 1.39901 * 109.47321 * 345.00367 * 25 24 23 29 29 N 1.32733 * 109.62376 * 0.02562 * 24 23 22 30 30 C 1.32858 * 109.74076 * 359.97438 * 29 24 23 31 31 N 1.31656 * 119.78195 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46859 * 90.00976 * 1 2 3 33 33 H 1.09000 * 109.47052 * 210.00049 * 1 2 3 34 34 H 1.08992 * 109.47716 * 330.00397 * 1 2 3 35 35 H 1.07997 * 120.49883 * 359.97438 * 3 2 1 36 36 H 0.96996 * 120.00294 * 180.02562 * 5 4 3 37 37 H 0.97001 * 119.99922 * 180.02562 * 11 10 8 38 38 H 1.08000 * 120.00113 * 0.02562 * 17 16 6 39 39 H 1.08006 * 120.00060 * 180.23240 * 18 17 16 40 40 H 1.08009 * 119.99687 * 179.82965 * 19 18 17 41 41 H 1.08007 * 120.00005 * 179.97438 * 20 19 18 42 42 H 1.08006 * 120.00174 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1986 1.2086 0.0000 4 6 3.5800 1.1902 -0.0057 5 7 4.2978 2.3655 -0.0112 6 6 3.5967 3.6518 -0.0104 7 1 2.6864 3.5691 0.5833 8 6 3.2413 4.0310 -1.4250 9 1 2.2174 4.2596 -1.6817 10 6 4.2231 4.0861 -2.3914 11 7 5.4265 3.6228 -2.1333 12 14 3.8439 4.8189 -4.0673 13 1 3.4205 6.2329 -3.9050 14 1 5.0589 4.7610 -4.9192 15 1 2.7510 4.0455 -4.7098 16 6 4.4897 4.7102 0.5841 17 6 5.8579 4.6446 0.3978 18 6 6.6767 5.6176 0.9398 19 6 6.1280 6.6517 1.6749 20 6 4.7604 6.7145 1.8656 21 6 3.9412 5.7436 1.3203 22 7 4.2198 -0.0158 -0.0007 23 7 5.5700 -0.3884 -0.0012 24 6 5.6068 -1.6986 -0.0013 25 6 6.8624 -2.5320 -0.0023 26 9 7.0630 -3.0745 1.2716 27 9 6.7344 -3.5670 -0.9350 28 9 7.9553 -1.7284 -0.3444 29 7 4.3696 -2.1793 -0.0016 30 6 3.4984 -1.1763 -0.0010 31 7 2.1609 -1.1427 -0.0005 32 1 -0.3633 -0.0002 -1.0277 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5137 35 1 1.6632 2.1465 -0.0004 36 1 5.2674 2.3416 -0.0155 37 1 6.1173 3.6619 -2.8131 38 1 6.2868 3.8350 -0.1741 39 1 7.7453 5.5684 0.7911 40 1 6.7680 7.4105 2.1006 41 1 4.3317 7.5222 2.4403 42 1 2.8726 5.7929 1.4689 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095964651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = 18.710291 kcal Electronic energy + Delta-G solvation = -34617.716008 eV Core-core repulsion = 29571.539498 eV Total energy + Delta-G solvation = -5046.176511 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.116 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.14565 -47.66858 -47.64246 -42.55284 -39.19632 -38.44214 -36.46320 -34.11539 -32.49622 -31.89599 -30.86179 -30.26504 -29.35940 -28.64099 -27.36770 -26.58005 -23.89423 -22.94664 -22.35619 -21.78414 -21.07391 -20.42321 -18.67986 -18.65167 -18.57044 -17.83654 -17.24501 -16.98087 -16.29805 -16.20333 -15.75306 -15.08586 -14.62461 -14.50449 -14.46159 -14.34207 -14.16256 -14.05225 -13.77841 -13.76119 -13.64174 -13.53607 -13.31208 -12.84697 -12.70727 -12.69972 -12.49163 -12.28530 -12.21674 -12.09697 -11.90008 -11.59425 -11.27426 -11.15550 -10.88557 -10.51945 -10.35626 -10.13695 -10.02008 -9.55511 -9.48894 -9.20183 -8.94868 -8.28525 -8.01645 -7.27868 -6.60659 -4.77425 1.07263 1.18069 1.78262 1.98791 2.06848 2.46512 2.54869 3.00916 3.08551 3.09907 3.34473 3.44331 3.82808 3.97725 4.00699 4.20330 4.36168 4.46725 4.71626 4.73161 5.00593 5.43096 5.44921 5.46415 5.56594 5.65285 5.68050 5.81928 5.85389 5.88180 6.02364 6.09150 6.14500 6.18477 6.28062 6.32693 6.57014 6.68649 6.73979 7.01954 7.13730 7.21845 7.35394 7.44004 7.55343 7.66189 7.77601 8.15029 8.21655 8.29992 8.95314 10.36492 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.003479 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.014272 B = 8046.418457 C = 8938.212104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.260 3.740 3 C -0.325 4.325 4 C 0.504 3.496 5 N -0.632 5.632 6 C 0.290 3.710 7 H 0.063 0.937 8 C -0.534 4.534 9 H 0.077 0.923 10 C 0.082 3.918 11 N -0.864 5.864 12 Si 0.904 3.096 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.272 1.272 16 C -0.052 4.052 17 C -0.094 4.094 18 C -0.132 4.132 19 C -0.143 4.143 20 C -0.132 4.132 21 C -0.121 4.121 22 N -0.357 5.357 23 N -0.289 5.289 24 C 0.179 3.821 25 C 0.579 3.421 26 F -0.161 7.161 27 F -0.157 7.157 28 F -0.157 7.157 29 N -0.521 5.521 30 C 0.500 3.500 31 N -0.533 5.533 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.169 0.831 36 H 0.413 0.587 37 H 0.274 0.726 38 H 0.146 0.854 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 -1.004 5.555 6.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 C -0.359 4.359 4 C 0.271 3.729 5 N -0.252 5.252 6 C 0.190 3.810 7 H 0.081 0.919 8 C -0.572 4.572 9 H 0.095 0.905 10 C -0.126 4.126 11 N -0.498 5.498 12 Si 0.731 3.269 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.197 1.197 16 C -0.053 4.053 17 C -0.113 4.113 18 C -0.150 4.150 19 C -0.161 4.161 20 C -0.151 4.151 21 C -0.139 4.139 22 N -0.145 5.145 23 N -0.122 5.122 24 C -0.107 4.107 25 C 0.522 3.478 26 F -0.143 7.143 27 F -0.138 7.138 28 F -0.138 7.138 29 N -0.258 5.258 30 C 0.140 3.860 31 N -0.261 5.261 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.186 0.814 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.163 0.837 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.123 -1.582 5.472 6.079 hybrid contribution 0.977 1.365 -1.261 2.100 sum -1.146 -0.217 4.211 4.369 Atomic orbital electron populations 1.20758 0.87255 1.03957 1.03913 1.21382 0.97110 0.86510 0.84202 1.21077 0.88614 1.01212 1.25028 1.18298 0.89288 0.77903 0.87437 1.46377 1.10767 1.02564 1.65486 1.18097 0.89568 0.76852 0.96524 0.91906 1.21313 0.95572 1.48567 0.91731 0.90496 1.25012 0.94601 0.93280 0.99669 1.69641 1.03247 1.41657 1.35292 0.86417 0.78246 0.80023 0.82228 1.19616 1.20934 1.19739 1.20152 0.94254 0.97201 0.93696 1.21569 0.93351 0.99961 0.96387 1.21119 0.99262 0.95663 0.98946 1.20924 0.95098 0.98880 1.01188 1.20879 0.93785 0.98943 1.01447 1.20799 0.99201 0.95268 0.98681 1.48679 1.06131 1.07876 1.51777 1.78251 0.92705 1.11495 1.29780 1.23555 0.93819 0.90612 1.02691 1.16245 0.80103 0.76968 0.74515 1.93253 1.95218 1.86311 1.39491 1.93258 1.95818 1.59190 1.65521 1.93270 1.55279 1.73252 1.92017 1.70584 0.96497 1.26710 1.31963 1.22484 0.90094 0.80006 0.93395 1.67777 1.00428 1.28386 1.29471 0.89313 0.89957 0.89691 0.81387 0.74680 0.91580 0.83695 0.87338 0.87488 0.87188 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.05 10.18 36.01 0.37 -0.68 16 2 C 0.26 4.03 6.81 -82.29 -0.56 3.47 16 3 C -0.32 -5.36 8.84 -39.23 -0.35 -5.70 16 4 C 0.50 9.73 7.73 -152.97 -1.18 8.55 16 5 N -0.63 -12.43 4.18 -55.78 -0.23 -12.66 16 6 C 0.29 5.52 2.15 -70.23 -0.15 5.37 16 7 H 0.06 1.07 6.41 -51.93 -0.33 0.74 16 8 C -0.53 -11.40 8.70 -34.44 -0.30 -11.70 16 9 H 0.08 1.60 7.83 -52.49 -0.41 1.19 16 10 C 0.08 1.85 5.19 -17.82 -0.09 1.76 16 11 N -0.86 -19.83 8.93 55.43 0.49 -19.34 16 12 Si 0.90 18.58 29.55 -169.99 -5.02 13.55 16 13 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 16 C -0.05 -0.97 4.84 -104.62 -0.51 -1.48 16 17 C -0.09 -1.81 7.93 -39.58 -0.31 -2.13 16 18 C -0.13 -2.27 10.05 -39.58 -0.40 -2.66 16 19 C -0.14 -2.23 10.05 -39.59 -0.40 -2.63 16 20 C -0.13 -2.04 10.05 -39.59 -0.40 -2.44 16 21 C -0.12 -2.03 9.69 -39.59 -0.38 -2.41 16 22 N -0.36 -7.35 3.93 -12.98 -0.05 -7.40 16 23 N -0.29 -5.99 12.54 32.39 0.41 -5.59 16 24 C 0.18 3.50 7.38 -157.00 -1.16 2.34 16 25 C 0.58 9.52 3.57 36.00 0.13 9.65 16 26 F -0.16 -2.48 17.30 2.25 0.04 -2.44 16 27 F -0.16 -2.49 17.30 2.25 0.04 -2.45 16 28 F -0.16 -2.52 17.14 2.25 0.04 -2.48 16 29 N -0.52 -10.84 11.26 -11.80 -0.13 -10.97 16 30 C 0.50 10.35 9.00 -323.16 -2.91 7.44 16 31 N -0.53 -9.97 10.38 -10.18 -0.11 -10.07 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.17 2.46 6.25 -52.49 -0.33 2.13 16 36 H 0.41 8.66 6.14 -40.82 -0.25 8.41 16 37 H 0.27 6.29 8.31 -40.82 -0.34 5.95 16 38 H 0.15 3.03 4.73 -52.49 -0.25 2.78 16 39 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 40 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 42 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -25.65 372.25 -11.18 -36.83 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -3.66 Total: 10.66 kcal Atomic # 6 Polarization: 15.35 SS G_CDS: -8.60 Total: 6.75 kcal Atomic # 7 Polarization: -66.41 SS G_CDS: 0.38 Total: -66.03 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.12 Total: -7.37 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.55 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -25.65 -11.18 -36.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095964651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.537 kcal (2) G-P(sol) polarization free energy of solvation -25.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds