Wall clock time and date at job start Tue Mar 31 2020 05:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 S 1.65597 * 119.99922 * 2 1 4 4 O 1.42106 * 106.40429 * 178.54025 * 3 2 1 5 5 O 1.42102 * 106.40704 * 311.46389 * 3 2 1 6 6 C 1.76199 * 107.21681 * 65.00065 * 3 2 1 7 7 C 1.38401 * 119.82972 * 269.72234 * 6 3 2 8 8 C 1.37897 * 120.17081 * 179.76110 * 7 6 3 9 9 C 1.39834 * 119.82159 * 0.53977 * 8 7 6 10 10 C 1.47215 * 120.16650 * 179.69909 * 9 8 7 11 11 C 1.34817 * 119.99646 * 42.90357 * 10 9 8 12 12 C 1.46422 * 120.00063 * 11.02014 * 11 10 9 13 13 O 1.21699 * 120.00261 * 7.25590 * 12 11 10 14 14 N 1.34775 * 119.99831 * 187.25964 * 12 11 10 15 15 C 1.46502 * 120.00180 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47251 * 89.99942 * 15 14 12 17 17 H 1.08004 * 120.00025 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00311 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99482 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00176 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47407 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47140 * 120.00382 * 20 18 16 23 23 H 1.48500 * 109.47050 * 239.99875 * 20 18 16 24 24 C 1.46501 * 119.99946 * 359.97438 * 14 12 11 25 25 C 1.52996 * 109.47305 * 90.00172 * 24 14 12 26 26 C 1.47201 * 109.47258 * 180.02562 * 25 24 14 27 27 N 9.93771 * 108.69150 * 191.04163 * 6 1 2 28 28 C 1.39831 * 119.66779 * 359.71437 * 9 8 7 29 29 C 1.37894 * 119.82105 * 0.02562 * 28 9 8 30 30 H 1.08998 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47055 * 299.99653 * 1 2 3 32 32 H 1.09002 * 109.47578 * 60.00102 * 1 2 3 33 33 H 0.97005 * 120.00157 * 180.02562 * 2 1 3 34 34 H 1.07997 * 119.90959 * 0.02562 * 7 6 3 35 35 H 1.07995 * 120.08522 * 180.28031 * 8 7 6 36 36 H 1.07994 * 120.00172 * 222.90355 * 10 9 8 37 37 H 1.07997 * 119.99446 * 191.01731 * 11 10 9 38 38 H 1.09003 * 109.46834 * 209.99471 * 15 14 12 39 39 H 1.08994 * 109.46629 * 329.99651 * 15 14 12 40 40 H 0.97006 * 119.99649 * 179.97438 * 19 18 16 41 41 H 1.08999 * 109.47487 * 210.00388 * 24 14 12 42 42 H 1.09003 * 109.47380 * 330.00038 * 24 14 12 43 43 H 1.08999 * 109.46998 * 299.99944 * 25 24 14 44 44 H 1.08995 * 109.47124 * 59.99941 * 25 24 14 45 45 H 1.07999 * 120.09306 * 179.97438 * 28 9 8 46 46 H 1.08005 * 119.91110 * 179.97438 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4341 0.0000 4 8 3.6738 1.1003 0.0347 5 8 1.7119 2.2330 -1.0215 6 6 1.9377 2.2414 1.5254 7 6 0.8600 3.1053 1.6124 8 6 0.5726 3.7371 2.8040 9 6 1.3802 3.5116 3.9230 10 6 1.0843 4.1871 5.1971 11 6 -0.1884 4.2767 5.6329 12 6 -1.2435 3.5031 4.9754 13 8 -0.9557 2.6815 4.1250 14 7 -2.5334 3.7009 5.3120 15 6 -3.5892 2.9273 4.6539 16 6 -3.8430 1.6613 5.4309 17 1 -3.2750 1.4539 6.3258 18 6 -4.8003 0.7678 4.9995 19 7 -5.4923 1.0207 3.9101 20 14 -5.1144 -0.8018 5.9623 21 1 -4.2115 -0.8491 7.1404 22 1 -6.5268 -0.8273 6.4204 23 1 -4.8552 -1.9767 5.0919 24 6 -2.8798 4.6896 6.3361 25 6 -3.1103 6.0498 5.6746 26 6 -3.4578 7.0433 6.7037 27 7 -3.7273 7.8106 7.4961 28 6 2.4704 2.6414 3.8257 29 6 2.7416 2.0130 2.6286 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.9500 -0.8401 -0.0004 34 1 0.2399 3.2818 0.7459 35 1 -0.2714 4.4074 2.8715 36 1 1.8867 4.6109 5.7827 37 1 -0.4295 4.9190 6.4669 38 1 -4.5035 3.5196 4.6157 39 1 -3.2768 2.6753 3.6406 40 1 -6.1656 0.3918 3.6063 41 1 -3.7887 4.3770 6.8503 42 1 -2.0645 4.7688 7.0553 43 1 -2.2015 6.3624 5.1605 44 1 -3.9256 5.9706 4.9556 45 1 3.0989 2.4625 4.6856 46 1 3.5835 1.3409 2.5517 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096133943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:25 Heat of formation + Delta-G solvation = -20.204249 kcal Electronic energy + Delta-G solvation = -32091.814295 eV Core-core repulsion = 27688.958264 eV Total energy + Delta-G solvation = -4402.856031 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.124 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.98723 -38.66851 -37.23706 -36.95389 -35.86173 -35.46268 -34.99891 -33.93632 -32.91609 -31.04641 -30.87029 -30.04157 -27.51298 -25.97905 -24.64966 -24.10502 -22.96095 -22.66340 -20.79336 -19.58032 -18.35959 -18.04559 -17.78624 -17.47182 -17.06752 -16.55859 -16.28295 -15.87365 -15.36383 -14.94282 -14.79694 -14.64233 -14.57398 -14.17884 -14.06431 -13.84514 -13.68031 -13.55933 -13.32408 -12.94498 -12.85554 -12.73332 -12.52663 -12.49954 -12.28091 -12.10589 -12.01842 -11.90668 -11.77087 -11.63303 -11.38282 -11.22902 -11.06007 -10.98912 -10.81295 -10.72164 -10.31728 -10.04601 -9.80339 -9.64871 -9.32260 -8.89610 -8.56345 -8.24448 -7.88597 -6.17909 -4.22597 0.32481 0.58046 1.51113 1.66313 2.67644 2.74992 3.01318 3.20970 3.29535 3.32079 3.54425 3.59448 3.68107 3.86926 4.14938 4.33854 4.36601 4.58326 4.78946 4.88873 4.94221 5.00069 5.04236 5.07193 5.17587 5.25499 5.34325 5.38130 5.50678 5.53457 5.72676 5.73353 5.79922 5.85684 5.89493 5.95622 6.01288 6.12249 6.17805 6.34189 6.54260 6.83959 6.85429 6.94726 7.23002 7.31499 7.50747 7.78043 8.06887 8.12396 8.71465 8.86491 9.43357 10.90032 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.007448 B = 0.003140 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3758.539898 B = 8914.353456 C =11431.845286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -1.120 6.120 3 S 2.699 3.301 4 O -0.968 6.968 5 O -0.960 6.960 6 C -0.671 4.671 7 C -0.034 4.034 8 C -0.053 4.053 9 C -0.001 4.001 10 C -0.058 4.058 11 C -0.188 4.188 12 C 0.526 3.474 13 O -0.519 6.519 14 N -0.587 5.587 15 C 0.245 3.755 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.064 3.936 19 N -0.892 5.892 20 Si 0.895 3.105 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.115 3.885 25 C -0.050 4.050 26 C 0.216 3.784 27 N -0.444 5.444 28 C -0.128 4.128 29 C -0.032 4.032 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.416 0.584 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.035 0.965 39 H 0.048 0.952 40 H 0.264 0.736 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.128 0.872 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.296 4.116 -2.398 14.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.879 5.879 3 S 2.789 3.211 4 O -0.958 6.958 5 O -0.950 6.950 6 C -0.759 4.759 7 C -0.053 4.053 8 C -0.072 4.072 9 C -0.001 4.001 10 C -0.078 4.078 11 C -0.209 4.209 12 C 0.315 3.685 13 O -0.398 6.398 14 N -0.317 5.317 15 C 0.126 3.874 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.531 5.531 20 Si 0.723 3.277 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.011 4.011 25 C -0.091 4.091 26 C -0.102 4.102 27 N -0.122 5.122 28 C -0.146 4.146 29 C -0.051 4.051 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.250 0.750 34 H 0.154 0.846 35 H 0.143 0.857 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.146 0.854 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.235 5.198 -2.472 14.433 hybrid contribution -0.563 -1.542 1.259 2.069 sum 12.672 3.656 -1.213 13.244 Atomic orbital electron populations 1.21564 0.77766 1.04519 1.02711 1.55252 1.16545 1.24043 1.92100 1.01636 0.72651 0.72722 0.74105 1.93567 1.31126 1.83608 1.87501 1.93575 1.78682 1.68461 1.54322 1.30654 1.07906 1.16151 1.21229 1.20681 0.93524 0.92921 0.98221 1.21177 0.95930 0.98643 0.91412 1.19202 0.93476 0.94353 0.93088 1.22367 0.96288 0.95533 0.93620 1.23477 0.93830 1.00966 1.02614 1.18283 0.82945 0.84002 0.83292 1.90864 1.81362 1.35275 1.32275 1.48223 1.07291 1.37520 1.38660 1.19376 0.83846 0.90099 0.94100 1.21420 1.19904 1.04639 1.10732 0.92393 1.24893 0.95718 0.98170 0.95053 1.69923 1.23867 1.36772 1.22539 0.86485 0.77919 0.83264 0.80002 1.19850 1.20951 1.20872 1.21363 1.03210 0.85777 0.90769 1.19902 1.04943 0.90646 0.93648 1.29076 0.93006 0.93911 0.94181 1.81195 1.09388 1.10907 1.10672 1.21230 0.97609 0.98094 0.97714 1.20623 0.96597 0.96513 0.91406 0.89906 0.91132 0.91368 0.75017 0.84619 0.85683 0.84479 0.84788 0.94709 0.93405 0.92677 0.88735 0.90427 0.87473 0.86495 0.85410 0.84794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 11.14 59.85 0.67 1.52 16 2 N -1.12 -11.60 6.19 -16.64 -0.10 -11.71 16 3 S 2.70 34.19 5.74 -107.50 -0.62 33.57 16 4 O -0.97 -13.85 17.26 -57.17 -0.99 -14.84 16 5 O -0.96 -14.55 16.98 -57.17 -0.97 -15.52 16 6 C -0.67 -9.03 5.96 -39.46 -0.24 -9.27 16 7 C -0.03 -0.48 9.50 -39.65 -0.38 -0.86 16 8 C -0.05 -0.75 6.58 -39.11 -0.26 -1.01 16 9 C 0.00 -0.01 4.57 -105.06 -0.48 -0.49 16 10 C -0.06 -0.62 9.81 -37.15 -0.36 -0.99 16 11 C -0.19 -2.17 9.14 -37.50 -0.34 -2.51 16 12 C 0.53 8.59 6.61 -12.97 -0.09 8.50 16 13 O -0.52 -10.34 11.71 5.19 0.06 -10.28 16 14 N -0.59 -9.70 2.46 -176.71 -0.43 -10.13 16 15 C 0.24 5.36 5.16 -5.19 -0.03 5.33 16 16 C -0.53 -13.36 9.39 -34.44 -0.32 -13.68 16 17 H 0.06 1.49 7.81 -52.48 -0.41 1.08 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -24.29 13.29 55.43 0.74 -23.56 16 20 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.12 1.38 5.12 -4.04 -0.02 1.36 16 25 C -0.05 -0.46 6.03 -29.52 -0.18 -0.64 16 26 C 0.22 2.41 15.43 -20.78 -0.32 2.09 16 27 N -0.44 -6.18 18.53 42.13 0.78 -5.40 16 28 C -0.13 -1.57 9.80 -39.11 -0.38 -1.95 16 29 C -0.03 -0.40 9.50 -39.65 -0.38 -0.78 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.42 3.32 8.96 -34.47 -0.31 3.01 16 34 H 0.14 1.78 7.59 -52.49 -0.40 1.38 16 35 H 0.13 1.73 6.94 -52.49 -0.36 1.37 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.13 1.12 6.15 -52.49 -0.32 0.80 16 38 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 39 H 0.05 1.19 7.42 -51.93 -0.39 0.81 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.09 1.24 8.07 -51.93 -0.42 0.82 16 42 H 0.08 0.75 6.02 -51.93 -0.31 0.44 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.13 1.43 7.60 -52.48 -0.40 1.03 16 LS Contribution 411.93 15.07 6.21 6.21 Total: -1.00 -35.57 411.93 -9.38 -44.95 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.83 Total: 3.06 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: -3.20 Total: -11.79 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.98 Total: -50.80 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.90 Total: -40.64 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 34.19 SS G_CDS: -0.62 Total: 33.57 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.57 -9.38 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096133943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.750 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds