Wall clock time and date at job start Tue Mar 31 2020 05:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31570 * 1 3 3 Si 1.86792 * 120.00283 * 2 1 4 4 H 1.48503 * 109.47020 * 269.99283 * 3 2 1 5 5 H 1.48500 * 109.47522 * 29.99422 * 3 2 1 6 6 H 1.48499 * 109.47668 * 149.99854 * 3 2 1 7 7 C 1.38639 * 119.99687 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99899 * 180.02562 * 7 2 1 9 9 O 1.34808 * 119.99990 * 0.02562 * 7 2 1 10 10 C 1.35776 * 117.00102 * 185.58259 * 9 7 2 11 11 C 1.38912 * 119.99354 * 5.99083 * 10 9 7 12 12 C 1.37991 * 120.00441 * 180.02562 * 11 10 9 13 13 C 1.38950 * 119.99572 * 359.97438 * 12 11 10 14 14 N 1.39880 * 120.00484 * 179.97438 * 13 12 11 15 15 C 1.34775 * 119.99758 * 35.21118 * 14 13 12 16 16 O 1.21714 * 120.00194 * 355.73823 * 15 14 13 17 17 C 1.46392 * 119.99793 * 175.73895 * 15 14 13 18 18 C 1.34825 * 119.99739 * 185.44468 * 17 15 14 19 19 C 1.47206 * 119.99894 * 185.02199 * 18 17 15 20 20 C 1.39847 * 120.16678 * 294.72053 * 19 18 17 21 21 C 1.37884 * 119.82108 * 179.78585 * 20 19 18 22 22 C 1.38405 * 120.17517 * 0.49371 * 21 20 19 23 23 C 1.38395 * 120.34333 * 359.73995 * 22 21 20 24 24 C 1.37890 * 120.17496 * 0.02562 * 23 22 21 25 25 C 1.50698 * 120.00300 * 5.01856 * 18 17 15 26 26 F 1.39902 * 109.47181 * 53.68563 * 25 18 17 27 27 F 1.39901 * 109.47237 * 293.68025 * 25 18 17 28 28 F 1.39906 * 109.47123 * 173.67851 * 25 18 17 29 29 C 1.38953 * 119.99142 * 0.26318 * 13 12 11 30 30 C 1.37990 * 119.99149 * 359.50605 * 29 13 12 31 31 H 0.97006 * 120.00191 * 0.02562 * 1 2 3 32 32 H 1.08001 * 120.00196 * 359.97397 * 11 10 9 33 33 H 1.08003 * 120.00530 * 179.97438 * 12 11 10 34 34 H 0.96999 * 120.00210 * 215.20452 * 14 13 12 35 35 H 1.07997 * 120.00078 * 5.43823 * 17 15 14 36 36 H 1.07997 * 120.08526 * 0.02562 * 20 19 18 37 37 H 1.08004 * 119.91042 * 180.24832 * 21 20 19 38 38 H 1.07995 * 119.82874 * 179.71524 * 22 21 20 39 39 H 1.08000 * 119.91842 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.08978 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.00112 * 179.74635 * 29 13 12 42 42 H 1.08006 * 119.99253 * 180.20740 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4974 2.0462 -1.4001 5 1 1.4473 2.6527 0.6999 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3347 -2.3681 0.0005 10 6 2.0691 -3.5040 0.1188 11 6 3.4354 -3.4259 0.3573 12 6 4.1821 -4.5802 0.4769 13 6 3.5671 -5.8206 0.3594 14 7 4.3239 -6.9908 0.4801 15 6 5.3589 -7.0380 1.3421 16 8 5.6837 -6.0398 1.9583 17 6 6.0925 -8.2897 1.5372 18 6 7.0553 -8.3672 2.4778 19 6 7.8680 -9.5884 2.6003 20 6 7.2723 -10.7932 2.9869 21 6 8.0395 -11.9338 3.0950 22 6 9.3975 -11.8863 2.8321 23 6 9.9952 -10.6968 2.4537 24 6 9.2407 -9.5486 2.3364 25 6 7.2996 -7.2035 3.4037 26 9 6.0998 -6.8430 4.0263 27 9 7.7886 -6.1178 2.6692 28 9 8.2374 -7.5696 4.3753 29 6 2.2013 -5.8985 0.1159 30 6 1.4542 -4.7440 0.0010 31 1 -0.4851 0.8401 -0.0004 32 1 3.9135 -2.4618 0.4483 33 1 5.2444 -4.5195 0.6620 34 1 4.1038 -7.7683 -0.0564 35 1 5.8623 -9.1511 0.9278 36 1 6.2135 -10.8308 3.1963 37 1 7.5802 -12.8658 3.3896 38 1 9.9939 -12.7820 2.9230 39 1 11.0555 -10.6675 2.2506 40 1 9.7086 -8.6210 2.0414 41 1 1.7239 -6.8625 0.0204 42 1 0.3920 -4.8046 -0.1849 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096189961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:37 Heat of formation + Delta-G solvation = -126.092434 kcal Electronic energy + Delta-G solvation = -33244.005486 eV Core-core repulsion = 28126.964356 eV Total energy + Delta-G solvation = -5117.041130 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 377.103 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -49.96792 -47.54055 -47.33152 -40.39639 -39.59743 -38.71473 -36.69576 -34.96138 -34.10263 -32.21196 -31.44256 -30.55989 -30.20248 -28.32822 -26.54794 -25.27650 -24.04362 -22.97939 -22.53957 -21.86507 -20.66875 -20.07046 -18.84899 -18.28755 -18.25059 -17.83261 -17.46939 -16.88364 -16.63017 -16.06421 -15.46236 -15.40355 -15.11615 -14.52001 -14.41253 -14.35530 -14.22427 -14.05581 -13.92447 -13.88923 -13.68713 -13.61231 -13.56598 -13.51089 -13.46746 -13.15026 -12.89091 -12.57882 -12.24576 -11.81664 -11.68926 -11.67216 -11.56011 -11.53127 -11.00743 -10.81625 -10.44038 -10.40964 -9.96044 -9.66344 -9.43858 -9.29349 -9.16811 -8.71661 -8.22940 -6.97650 -6.45919 -4.03041 0.18071 0.82320 0.92922 2.11267 2.21826 2.62924 2.97124 3.09135 3.15398 3.17423 3.20738 3.29633 3.73945 3.83550 3.97542 4.39829 4.47078 4.48323 4.51161 4.54647 4.59163 4.65613 4.92756 5.04346 5.09473 5.13475 5.22051 5.31434 5.44714 5.54446 5.64270 5.72927 5.94188 5.95797 6.02304 6.07491 6.14545 6.29891 6.44338 6.68180 6.81465 6.96276 7.05043 7.27668 7.41847 7.54431 7.73386 7.99102 8.16081 8.99880 9.68575 10.71803 Molecular weight = 377.10amu Principal moments of inertia in cm(-1) A = 0.018932 B = 0.001904 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.585939 B =14705.075114 C =15607.473610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.175 6.175 10 C 0.148 3.852 11 C -0.221 4.221 12 C -0.059 4.059 13 C 0.027 3.973 14 N -0.642 5.642 15 C 0.517 3.483 16 O -0.503 6.503 17 C -0.106 4.106 18 C -0.098 4.098 19 C -0.063 4.063 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.108 4.108 23 C -0.117 4.117 24 C -0.089 4.089 25 C 0.509 3.491 26 F -0.163 7.163 27 F -0.161 7.161 28 F -0.184 7.184 29 C -0.089 4.089 30 C -0.179 4.179 31 H 0.270 0.730 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.404 0.596 35 H 0.155 0.845 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.115 0.885 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.103 -25.326 3.293 30.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.094 3.906 11 C -0.240 4.240 12 C -0.079 4.079 13 C -0.065 4.065 14 N -0.286 5.286 15 C 0.304 3.696 16 O -0.380 6.380 17 C -0.127 4.127 18 C -0.102 4.102 19 C -0.063 4.063 20 C -0.111 4.111 21 C -0.138 4.138 22 C -0.126 4.126 23 C -0.135 4.135 24 C -0.107 4.107 25 C 0.455 3.545 26 F -0.144 7.144 27 F -0.142 7.142 28 F -0.166 7.166 29 C -0.109 4.109 30 C -0.199 4.199 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.239 0.761 35 H 0.173 0.827 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.133 0.867 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.893 -24.351 3.747 29.873 hybrid contribution 0.364 0.516 -0.105 0.640 sum 17.257 -23.835 3.642 29.651 Atomic orbital electron populations 1.70044 1.05958 1.27732 1.45849 1.25299 0.95865 0.98884 0.96487 0.85706 0.79011 0.79994 0.78733 1.19852 1.20238 1.19101 1.21340 0.91858 0.80795 1.52593 0.88993 1.83984 1.34312 1.11501 1.77969 1.19444 0.90439 0.88066 0.92667 1.21112 0.94138 0.98789 1.10004 1.20861 0.99856 0.90390 0.96805 1.17197 0.90302 0.85069 1.13957 1.42941 1.30311 1.15104 1.40231 1.18280 0.81802 0.88724 0.80773 1.90968 1.65061 1.35637 1.46318 1.23270 0.93927 0.98518 0.96981 1.21361 0.97743 0.93890 0.97165 1.18390 0.93276 0.91268 1.03361 1.21335 1.00235 0.91400 0.98092 1.21108 0.94123 0.98257 1.00269 1.21351 0.95040 0.98092 0.98093 1.21102 1.00149 0.92464 0.99829 1.21307 0.92180 0.99075 0.98104 1.18081 0.74654 0.82564 0.79238 1.93260 1.45323 1.92466 1.83345 1.93261 1.87728 1.56615 1.76578 1.93180 1.66393 1.91616 1.65377 1.20344 0.91199 0.97538 1.01805 1.19981 0.99823 0.89529 1.10551 0.91987 0.85146 0.85587 0.76132 0.82736 0.85304 0.85381 0.85663 0.85366 0.85480 0.86676 0.85995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.78 29.55 -169.99 -5.02 15.76 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -10.96 9.44 30.88 0.29 -10.67 16 8 H 0.09 2.42 5.30 -52.49 -0.28 2.14 16 9 O -0.17 -4.98 9.75 0.03 0.00 -4.97 16 10 C 0.15 3.58 6.65 -39.08 -0.26 3.32 16 11 C -0.22 -4.99 9.12 -39.42 -0.36 -5.35 16 12 C -0.06 -1.19 8.68 -39.41 -0.34 -1.53 16 13 C 0.03 0.47 6.30 -83.66 -0.53 -0.06 16 14 N -0.64 -8.22 5.33 -11.09 -0.06 -8.28 16 15 C 0.52 7.05 7.26 -12.98 -0.09 6.95 16 16 O -0.50 -8.93 8.59 5.18 0.04 -8.89 16 17 C -0.11 -1.00 9.59 -37.51 -0.36 -1.36 16 18 C -0.10 -1.03 4.99 -102.19 -0.51 -1.54 16 19 C -0.06 -0.54 4.68 -105.05 -0.49 -1.04 16 20 C -0.09 -0.66 9.73 -39.11 -0.38 -1.04 16 21 C -0.12 -0.70 10.03 -39.65 -0.40 -1.10 16 22 C -0.11 -0.61 10.04 -39.46 -0.40 -1.01 16 23 C -0.12 -0.75 10.03 -39.65 -0.40 -1.15 16 24 C -0.09 -0.71 9.43 -39.11 -0.37 -1.08 16 25 C 0.51 6.95 2.77 36.00 0.10 7.05 16 26 F -0.16 -2.61 14.86 2.25 0.03 -2.58 16 27 F -0.16 -2.50 14.92 2.25 0.03 -2.47 16 28 F -0.18 -2.39 16.25 2.25 0.04 -2.35 16 29 C -0.09 -1.50 9.96 -39.41 -0.39 -1.90 16 30 C -0.18 -3.67 9.98 -39.42 -0.39 -4.06 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.13 2.99 5.71 -52.49 -0.30 2.69 16 33 H 0.13 2.51 6.23 -52.48 -0.33 2.19 16 34 H 0.40 3.42 8.80 -40.82 -0.36 3.06 16 35 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 38 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 40 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 42 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 377.24 15.07 5.68 5.68 Total: -1.00 -34.37 377.24 -7.65 -42.02 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -3.78 Total: 5.14 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -5.38 Total: -14.56 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.70 Total: -32.78 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.04 Total: -13.86 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.10 Total: -7.39 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.37 -7.65 -42.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096189961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.077 kcal (2) G-P(sol) polarization free energy of solvation -34.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds