Wall clock time and date at job start Tue Mar 31 2020 05:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39725 * 125.77752 * 2 1 4 4 C 1.36152 * 107.86029 * 180.12472 * 3 2 1 5 5 N 1.39343 * 126.26679 * 179.88384 * 4 3 2 6 6 C 1.34771 * 120.00077 * 359.68372 * 5 4 3 7 7 O 1.21739 * 119.99974 * 359.97438 * 6 5 4 8 8 C 1.46195 * 120.00149 * 180.02562 * 6 5 4 9 9 C 1.35026 * 120.00110 * 173.28818 * 8 6 5 10 10 C 1.46941 * 120.00062 * 349.93694 * 9 8 6 11 11 C 1.39930 * 120.20735 * 310.55822 * 10 9 8 12 12 C 1.37753 * 119.87659 * 180.02562 * 11 10 9 13 13 C 1.38570 * 120.32303 * 359.97438 * 12 11 10 14 14 C 1.38127 * 120.43437 * 0.02562 * 13 12 11 15 15 C 1.38615 * 120.11213 * 359.97438 * 14 13 12 16 16 O 1.35681 * 120.15901 * 180.02562 * 15 14 13 17 17 C 1.42898 * 117.00344 * 0.02562 * 16 15 14 18 18 F 1.39901 * 109.47166 * 299.99674 * 17 16 15 19 19 F 1.39901 * 109.47041 * 60.00073 * 17 16 15 20 20 N 1.35816 * 107.47132 * 359.61122 * 4 3 2 21 21 C 1.46500 * 126.10037 * 180.21944 * 20 4 3 22 22 C 1.50706 * 109.46692 * 90.00101 * 21 20 4 23 23 H 1.07993 * 120.00005 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99769 * 180.02562 * 22 21 20 25 25 N 1.31517 * 119.99855 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00016 * 180.02562 * 24 22 21 27 27 H 1.48508 * 109.47116 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47195 * 119.99989 * 26 24 22 29 29 H 1.48498 * 109.47436 * 240.00097 * 26 24 22 30 30 N 1.30830 * 125.77805 * 179.68871 * 2 1 3 31 31 H 1.09005 * 109.46606 * 270.29133 * 1 2 3 32 32 H 1.09001 * 109.47295 * 30.28899 * 1 2 3 33 33 H 1.08998 * 109.47061 * 150.29197 * 1 2 3 34 34 H 1.08001 * 126.07213 * 359.97438 * 3 2 1 35 35 H 0.97008 * 120.00044 * 179.68770 * 5 4 3 36 36 H 1.08004 * 120.00253 * 353.29458 * 8 6 5 37 37 H 1.07997 * 119.99976 * 169.92755 * 9 8 6 38 38 H 1.07997 * 120.06220 * 0.05717 * 11 10 9 39 39 H 1.08001 * 119.83818 * 180.02562 * 12 11 10 40 40 H 1.07995 * 119.78402 * 180.27455 * 13 12 11 41 41 H 1.08001 * 119.94739 * 179.97438 * 14 13 12 42 42 H 1.09005 * 109.47298 * 179.97438 * 17 16 15 43 43 H 1.08994 * 109.47723 * 210.00533 * 21 20 4 44 44 H 1.09002 * 109.46719 * 330.00811 * 21 20 4 45 45 H 0.97005 * 119.99452 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7147 -0.0028 5 7 4.7493 1.5301 -0.0061 6 6 4.6128 2.8709 -0.0131 7 8 3.5022 3.3696 -0.0170 8 6 5.7982 3.7264 -0.0170 9 6 5.6662 5.0625 -0.1607 10 6 4.3656 5.6365 -0.5326 11 6 3.6511 5.1167 -1.6176 12 6 2.4327 5.6604 -1.9607 13 6 1.9104 6.7196 -1.2359 14 6 2.6045 7.2428 -0.1625 15 6 3.8320 6.7096 0.1984 16 8 4.5145 7.2225 1.2531 17 6 3.9086 8.3134 1.9493 18 9 3.7208 9.3830 1.0672 19 9 2.6715 7.9095 2.4627 20 7 3.6088 -0.6434 0.0043 21 6 4.7858 -1.5157 0.0088 22 6 5.1893 -1.8074 1.4312 23 1 4.6252 -1.3856 2.2498 24 6 6.2786 -2.6128 1.6874 25 7 6.9658 -3.1261 0.6904 26 14 6.7784 -2.9749 3.4504 27 1 5.8494 -2.2837 4.3803 28 1 6.7199 -4.4392 3.6907 29 1 8.1628 -2.4903 3.6821 30 7 2.2719 -1.0614 0.0058 31 1 -0.3633 0.0052 1.0277 32 1 -0.3634 0.8874 -0.5183 33 1 -0.3633 -0.8926 -0.5093 34 1 1.9875 2.1599 -0.0004 35 1 5.6343 1.1327 -0.0033 36 1 6.7797 3.2898 0.0948 37 1 6.5163 5.7093 -0.0021 38 1 4.0538 4.2906 -2.1848 39 1 1.8816 5.2585 -2.7980 40 1 0.9524 7.1363 -1.5097 41 1 2.1902 8.0688 0.3966 42 1 4.5565 8.6267 2.7680 43 1 4.5479 -2.4497 -0.5002 44 1 5.6076 -1.0196 -0.5076 45 1 7.7320 -3.6930 0.8707 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096310844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:53 Heat of formation + Delta-G solvation = -46.647646 kcal Electronic energy + Delta-G solvation = -34185.984494 eV Core-core repulsion = 29228.141405 eV Total energy + Delta-G solvation = -4957.843089 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 377.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.65291 -47.64037 -40.86681 -40.23146 -39.11154 -37.48153 -34.78032 -34.03034 -33.66675 -32.04169 -30.44808 -30.04083 -29.07499 -28.11123 -26.36816 -26.00962 -24.53476 -22.92435 -22.50226 -22.17096 -20.33775 -19.64036 -19.31607 -18.83666 -18.23564 -18.19036 -17.04443 -16.86287 -16.48251 -16.26516 -15.76705 -15.16417 -14.95370 -14.90038 -14.81741 -14.43573 -14.27808 -14.13031 -13.98921 -13.89916 -13.74652 -13.61000 -13.20545 -13.02816 -12.81962 -12.75214 -12.60869 -12.48499 -12.06116 -11.99602 -11.75552 -11.57271 -11.51886 -11.15820 -11.04938 -10.90641 -10.35468 -10.31440 -10.10334 -9.83502 -9.77947 -9.47335 -8.72549 -8.57676 -8.22614 -7.86690 -7.38350 -6.33430 -4.41605 0.63790 1.32869 1.65178 2.27891 2.66476 2.93151 3.14962 3.15628 3.23747 3.30060 3.37743 3.67366 3.74599 3.86006 3.97519 4.24966 4.32267 4.48115 4.72248 4.78104 4.88014 5.00030 5.06907 5.23181 5.31205 5.39041 5.45976 5.64462 5.78601 5.86909 5.97349 6.05364 6.16066 6.18379 6.22812 6.28296 6.37295 6.46445 6.47433 6.49365 6.72679 6.85720 6.95867 7.06090 7.55570 7.60524 7.67964 7.80548 7.96234 8.37929 8.64066 8.73354 9.26094 10.73681 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.010527 B = 0.002459 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.275710 B =11386.214419 C =12615.135653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.291 4.291 4 C 0.301 3.699 5 N -0.634 5.634 6 C 0.543 3.457 7 O -0.504 6.504 8 C -0.201 4.201 9 C -0.014 4.014 10 C -0.076 4.076 11 C -0.017 4.017 12 C -0.146 4.146 13 C -0.074 4.074 14 C -0.199 4.199 15 C 0.119 3.881 16 O -0.318 6.318 17 C 0.412 3.588 18 F -0.201 7.201 19 F -0.197 7.197 20 N -0.348 5.348 21 C 0.257 3.743 22 C -0.539 4.539 23 H 0.065 0.935 24 C 0.066 3.934 25 N -0.890 5.890 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.280 1.280 29 H -0.280 1.280 30 N -0.286 5.286 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.162 0.838 35 H 0.416 0.584 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.180 0.820 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 23.920 -2.780 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C -0.323 4.323 4 C 0.079 3.921 5 N -0.280 5.280 6 C 0.332 3.668 7 O -0.380 6.380 8 C -0.222 4.222 9 C -0.033 4.033 10 C -0.077 4.077 11 C -0.035 4.035 12 C -0.164 4.164 13 C -0.092 4.092 14 C -0.218 4.218 15 C 0.076 3.924 16 O -0.236 6.236 17 C 0.322 3.678 18 F -0.182 7.182 19 F -0.179 7.179 20 N -0.134 5.134 21 C 0.140 3.860 22 C -0.577 4.577 23 H 0.083 0.917 24 C -0.137 4.137 25 N -0.528 5.528 26 Si 0.732 3.268 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.206 1.206 30 N -0.111 5.111 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.179 0.821 35 H 0.252 0.748 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.197 0.803 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.428 22.765 -2.757 23.186 hybrid contribution 0.795 0.287 1.124 1.406 sum -2.633 23.052 -1.634 23.259 Atomic orbital electron populations 1.20011 0.87721 1.02229 1.02086 1.22008 0.96460 0.91113 1.02039 1.21272 0.89040 1.00388 1.21613 1.18038 0.88082 0.83233 1.02720 1.42753 1.08209 1.05654 1.71388 1.18330 0.90245 0.80998 0.77232 1.90832 1.26373 1.73143 1.47625 1.22897 0.98108 0.94002 1.07214 1.22169 0.95628 0.94096 0.91437 1.18152 0.96309 0.95654 0.97575 1.20945 0.93408 0.95340 0.93833 1.20946 0.96374 0.97671 1.01420 1.20952 0.98866 0.95540 0.93850 1.21304 0.95274 1.03661 1.01538 1.18822 0.91872 0.94028 0.87699 1.86536 1.46830 1.47349 1.42858 1.23345 0.81558 0.76096 0.86842 1.93091 1.95667 1.57423 1.72064 1.93114 1.47340 1.90456 1.86979 1.49490 1.06390 1.02160 1.55314 1.19602 0.77889 0.89709 0.98845 1.21393 1.13218 1.31714 0.91408 0.91687 1.24936 0.95707 0.94895 0.98186 1.69930 1.19198 1.32619 1.31068 0.86307 0.78341 0.78419 0.83691 1.19559 1.20547 1.20625 1.77319 0.86239 1.21890 1.25633 0.91405 0.91223 0.91621 0.82066 0.74768 0.84225 0.84244 0.85734 0.85701 0.85772 0.85289 0.80349 0.92622 0.93841 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 0.99 7.20 -82.46 -0.59 0.40 16 3 C -0.29 -5.99 9.58 -39.78 -0.38 -6.37 16 4 C 0.30 6.37 7.68 -152.77 -1.17 5.19 16 5 N -0.63 -11.07 5.41 -12.67 -0.07 -11.14 16 6 C 0.54 8.48 6.97 -13.07 -0.09 8.39 16 7 O -0.50 -8.81 9.56 5.15 0.05 -8.76 16 8 C -0.20 -2.33 9.95 -37.53 -0.37 -2.71 16 9 C -0.01 -0.15 9.33 -37.20 -0.35 -0.49 16 10 C -0.08 -0.96 4.33 -104.93 -0.45 -1.41 16 11 C -0.02 -0.21 6.77 -39.13 -0.26 -0.48 16 12 C -0.15 -1.69 10.02 -39.64 -0.40 -2.09 16 13 C -0.07 -0.82 10.03 -39.50 -0.40 -1.22 16 14 C -0.20 -2.36 8.25 -39.48 -0.33 -2.69 16 15 C 0.12 1.48 6.50 -38.63 -0.25 1.23 16 16 O -0.32 -3.36 9.89 -18.74 -0.19 -3.55 16 17 C 0.41 3.13 5.98 101.05 0.60 3.73 16 18 F -0.20 -1.72 15.58 2.25 0.04 -1.68 16 19 F -0.20 -1.96 15.59 2.25 0.04 -1.92 16 20 N -0.35 -8.21 3.62 -61.45 -0.22 -8.43 16 21 C 0.26 6.46 6.02 -5.19 -0.03 6.43 16 22 C -0.54 -14.57 9.39 -34.44 -0.32 -14.89 16 23 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 24 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 25 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 26 Si 0.91 20.76 29.54 -169.99 -5.02 15.74 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 N -0.29 -6.73 12.56 33.64 0.42 -6.31 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.16 3.24 5.82 -52.49 -0.31 2.93 16 35 H 0.42 6.72 7.97 -40.82 -0.33 6.39 16 36 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.53 7.52 -52.49 -0.39 1.13 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.13 1.41 5.10 -52.49 -0.27 1.14 16 42 H 0.18 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.04 1.05 7.52 -51.93 -0.39 0.66 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 393.22 15.07 5.93 5.93 Total: -1.00 -33.64 393.22 -7.85 -41.48 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.03 Total: 8.12 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -4.52 Total: -5.88 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.87 Total: -49.49 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -0.14 Total: -12.31 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.07 Total: -3.60 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.64 -7.85 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096310844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.163 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds