Wall clock time and date at job start Tue Mar 31 2020 05:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42902 * 113.99952 * 2 1 4 4 C 1.52996 * 109.47199 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47099 * 64.80347 * 4 3 2 6 6 C 1.46502 * 119.99797 * 272.68419 * 5 4 3 7 7 C 1.50697 * 109.47089 * 277.10078 * 6 5 4 8 8 H 1.07995 * 120.00204 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99854 * 180.02562 * 7 6 5 10 10 N 1.31511 * 120.00006 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99963 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.46830 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.46864 * 119.99918 * 11 9 7 14 14 H 1.48494 * 109.46975 * 240.00037 * 11 9 7 15 15 S 1.65596 * 120.00198 * 92.68097 * 5 4 3 16 16 O 1.42106 * 106.40093 * 151.01184 * 15 5 4 17 17 O 1.42099 * 106.40114 * 18.09558 * 15 5 4 18 18 C 1.76199 * 107.22158 * 264.55327 * 15 5 4 19 19 C 1.38262 * 119.99780 * 13.72602 * 18 15 5 20 20 C 1.38213 * 119.99780 * 179.74637 * 19 18 15 21 21 C 1.38257 * 119.99655 * 0.54675 * 20 19 18 22 22 C 1.38206 * 120.00457 * 359.70780 * 21 20 19 23 23 C 1.38214 * 119.99874 * 194.00291 * 18 15 5 24 24 S 1.76189 * 120.00136 * 359.97438 * 23 18 15 25 25 C 1.81397 * 104.45190 * 293.20808 * 24 23 18 26 26 O 1.42095 * 104.28040 * 49.28315 * 24 23 18 27 27 O 1.42108 * 104.27714 * 177.13606 * 24 23 18 28 28 H 1.08994 * 109.47027 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46766 * 300.00133 * 1 2 3 30 30 H 1.08996 * 109.46843 * 60.00155 * 1 2 3 31 31 H 1.09003 * 109.47316 * 59.99977 * 3 2 1 32 32 H 1.08998 * 109.47054 * 299.99917 * 3 2 1 33 33 H 1.08994 * 109.47175 * 304.80349 * 4 3 2 34 34 H 1.08992 * 109.47358 * 184.80054 * 4 3 2 35 35 H 1.09004 * 109.47050 * 37.10492 * 6 5 4 36 36 H 1.09002 * 109.47118 * 157.09904 * 6 5 4 37 37 H 0.97003 * 119.99909 * 179.97438 * 10 9 7 38 38 H 1.07995 * 119.99930 * 0.02562 * 19 18 15 39 39 H 1.08000 * 120.00037 * 180.28171 * 20 19 18 40 40 H 1.08005 * 119.99218 * 179.72790 * 21 20 19 41 41 H 1.07996 * 120.00428 * 179.97438 * 22 21 20 42 42 H 1.09003 * 109.47152 * 58.38488 * 25 24 23 43 43 H 1.09000 * 109.47501 * 178.38310 * 25 24 23 44 44 H 1.08996 * 109.47321 * 298.38733 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9764 0.5597 -1.2489 6 6 4.0496 -0.8998 -1.3518 7 6 5.3532 -1.3798 -0.7678 8 1 6.0567 -0.6689 -0.3604 9 6 5.6479 -2.7267 -0.7538 10 7 4.7910 -3.5925 -1.2495 11 14 7.2636 -3.3219 -0.0292 12 1 8.0456 -2.1577 0.4592 13 1 6.9889 -4.2441 1.1018 14 1 8.0407 -4.0367 -1.0733 15 16 4.3919 1.5031 -2.5449 16 8 5.3596 0.7684 -3.2820 17 8 4.6308 2.8066 -2.0321 18 6 2.9693 1.6274 -3.5771 19 6 1.7317 1.2396 -3.0981 20 6 0.6150 1.3420 -3.9059 21 6 0.7374 1.8217 -5.1969 22 6 1.9754 2.2044 -5.6775 23 6 3.0916 2.1072 -4.8675 24 16 4.6699 2.5952 -5.4801 25 6 5.1057 4.0555 -4.4961 26 8 5.5228 1.5050 -5.1591 27 8 4.4239 2.9597 -6.8314 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8510 0.5715 0.8447 34 1 3.9785 2.1768 0.0866 35 1 3.2197 -1.3448 -0.8028 36 1 3.9908 -1.1935 -2.3999 37 1 4.9985 -4.5401 -1.2399 38 1 1.6369 0.8608 -2.0912 39 1 -0.3526 1.0434 -3.5303 40 1 -0.1347 1.8976 -5.8296 41 1 2.0710 2.5787 -6.6860 42 1 5.1167 3.7911 -3.4387 43 1 6.0925 4.4117 -4.7918 44 1 4.3697 4.8412 -4.6664 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096404019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:50 Heat of formation + Delta-G solvation = -98.724253 kcal Electronic energy + Delta-G solvation = -33134.831283 eV Core-core repulsion = 28695.888474 eV Total energy + Delta-G solvation = -4438.942808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.089 amu Computer time = 2.92 seconds Orbital eigenvalues (eV) -39.35550 -38.10671 -37.14407 -36.81904 -35.83873 -35.54847 -35.29525 -32.54933 -31.70481 -31.41017 -29.68833 -29.42694 -26.86366 -25.86316 -23.77672 -23.47780 -22.89917 -21.86288 -19.40264 -18.62047 -18.32591 -17.23978 -16.84211 -16.47237 -16.27200 -16.20271 -16.07182 -15.67179 -15.26083 -15.17551 -14.95483 -14.72626 -14.44488 -14.12786 -13.72379 -13.65718 -13.26887 -13.12925 -12.81289 -12.67662 -12.46984 -12.38769 -12.03431 -11.97549 -11.94045 -11.70741 -11.63207 -11.37733 -11.14829 -11.04133 -10.97969 -10.86059 -10.81051 -10.47905 -10.42845 -10.22190 -9.92260 -9.72743 -9.65895 -9.60049 -9.34172 -8.37821 -8.15631 -5.98768 -4.01785 -0.06306 0.44274 0.72081 0.91378 2.70623 3.14272 3.16091 3.37031 3.45061 3.49493 3.75430 3.87232 3.94093 4.13838 4.50407 4.52703 4.63937 4.79070 4.84934 4.98112 5.04884 5.15315 5.17826 5.19862 5.33969 5.36503 5.40013 5.43086 5.45339 5.56486 5.59670 5.68314 5.73717 5.85987 5.89660 6.03802 6.14938 6.41195 6.57463 7.26201 7.28648 7.40081 7.65700 7.97974 8.26397 8.99550 9.62266 11.10296 Molecular weight = 377.09amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.004893 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.068472 B = 5720.711612 C = 7295.432632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.365 6.365 3 C 0.023 3.977 4 C 0.117 3.883 5 N -0.964 5.964 6 C 0.252 3.748 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.282 1.282 15 S 2.614 3.386 16 O -0.856 6.856 17 O -0.969 6.969 18 C -0.582 4.582 19 C -0.061 4.061 20 C -0.088 4.088 21 C -0.098 4.098 22 C -0.041 4.041 23 C -0.570 4.570 24 S 2.424 3.576 25 C -0.691 4.691 26 O -0.856 6.856 27 O -0.936 6.936 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.262 0.738 38 H 0.160 0.840 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.151 0.849 42 H 0.169 0.831 43 H 0.140 0.860 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.350 15.063 -2.331 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.283 6.283 3 C -0.056 4.056 4 C -0.010 4.010 5 N -0.805 5.805 6 C 0.131 3.869 7 C -0.565 4.565 8 H 0.081 0.919 9 C -0.139 4.139 10 N -0.533 5.533 11 Si 0.724 3.276 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.208 1.208 15 S 2.699 3.301 16 O -0.846 6.846 17 O -0.959 6.959 18 C -0.664 4.664 19 C -0.080 4.080 20 C -0.106 4.106 21 C -0.117 4.117 22 C -0.060 4.060 23 C -0.655 4.655 24 S 2.601 3.399 25 C -0.841 4.841 26 O -0.853 6.853 27 O -0.933 6.933 28 H 0.106 0.894 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.177 0.823 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.186 0.814 43 H 0.159 0.841 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.065 14.648 -3.208 18.060 hybrid contribution -1.034 -0.064 0.635 1.215 sum -11.099 14.584 -2.573 18.507 Atomic orbital electron populations 1.22794 0.82229 1.02914 0.99271 1.88184 1.18530 1.26622 1.94998 1.23478 0.96139 0.85724 1.00221 1.21443 0.90519 0.99787 0.89261 1.57358 1.81707 1.19423 1.21986 1.19341 0.98690 0.70454 0.98453 1.21468 1.03109 0.92258 1.39654 0.91940 1.24904 0.97027 0.96605 0.95382 1.69935 1.35474 1.02215 1.45681 0.86472 0.83694 0.78768 0.78665 1.19618 1.21114 1.20843 1.04903 0.75346 0.74932 0.74914 1.94003 1.52038 1.70132 1.68389 1.93396 1.84288 1.39061 1.79150 1.31554 1.20380 1.06396 1.08085 1.21653 0.91058 0.94050 1.01212 1.21575 0.99031 0.95915 0.94105 1.21527 0.97729 0.96584 0.95829 1.21094 0.91266 0.94430 0.99205 1.30484 1.22343 1.11076 1.01638 1.07722 0.76033 0.78921 0.77229 1.30931 1.12702 1.20399 1.20038 1.94099 1.62532 1.46050 1.82620 1.93553 1.84687 1.84979 1.30115 0.89428 0.94286 0.94762 0.92066 0.93434 0.87489 0.88297 0.92468 0.94448 0.92820 0.82318 0.84637 0.84462 0.83101 0.81412 0.84149 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.86 101.05 1.10 1.36 16 2 O -0.37 -5.50 8.40 -35.23 -0.30 -5.80 16 3 C 0.02 0.30 5.32 37.16 0.20 0.50 16 4 C 0.12 1.87 6.06 -4.04 -0.02 1.84 16 5 N -0.96 -19.47 1.97 -115.67 -0.23 -19.69 16 6 C 0.25 6.25 4.97 -5.19 -0.03 6.22 16 7 C -0.53 -14.56 9.37 -34.44 -0.32 -14.88 16 8 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 10 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 11 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 S 2.61 52.11 4.29 -107.50 -0.46 51.65 16 16 O -0.86 -20.77 12.73 -67.58 -0.86 -21.63 16 17 O -0.97 -17.48 13.15 -57.17 -0.75 -18.23 16 18 C -0.58 -10.07 5.83 -39.58 -0.23 -10.30 16 19 C -0.06 -0.91 8.57 -39.58 -0.34 -1.25 16 20 C -0.09 -1.04 10.05 -39.58 -0.40 -1.43 16 21 C -0.10 -1.09 10.05 -39.59 -0.40 -1.48 16 22 C -0.04 -0.53 9.50 -39.58 -0.38 -0.91 16 23 C -0.57 -9.13 5.59 -39.58 -0.22 -9.35 16 24 S 2.42 38.76 5.21 -107.50 -0.56 38.20 16 25 C -0.69 -8.48 10.61 101.05 1.07 -7.41 16 26 O -0.86 -17.72 13.30 -67.69 -0.90 -18.62 16 27 O -0.94 -15.17 16.74 -57.54 -0.96 -16.14 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.03 0.31 8.01 -51.93 -0.42 -0.11 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.58 5.36 -51.93 -0.28 0.30 16 33 H 0.11 1.76 8.09 -51.93 -0.42 1.34 16 34 H 0.10 1.37 6.93 -51.93 -0.36 1.01 16 35 H 0.06 1.44 6.78 -51.93 -0.35 1.09 16 36 H 0.04 1.02 7.69 -51.93 -0.40 0.62 16 37 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.16 2.31 3.00 -52.49 -0.16 2.15 16 39 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 41 H 0.15 1.66 7.22 -52.49 -0.38 1.28 16 42 H 0.17 2.39 3.85 -52.08 -0.20 2.19 16 43 H 0.14 1.32 8.14 -51.92 -0.42 0.90 16 44 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -36.81 372.02 -9.23 -46.04 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.47 Total: 2.64 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: -0.07 Total: -35.40 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.51 Total: -45.22 kcal Atomic # 8 Polarization: -76.64 SS G_CDS: -3.77 Total: -80.41 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Atomic # 16 Polarization: 90.88 SS G_CDS: -1.02 Total: 89.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.81 -9.23 -46.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096404019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.680 kcal (2) G-P(sol) polarization free energy of solvation -36.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.92 seconds