Wall clock time and date at job start Tue Mar 31 2020 05:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00187 * 2 1 4 4 H 1.48498 * 109.47011 * 269.99489 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99757 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99868 * 3 2 1 7 7 C 1.37887 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99631 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 S 1.81391 * 109.47235 * 180.02562 * 11 10 9 13 13 O 1.42104 * 110.54521 * 291.62885 * 12 11 10 14 14 O 1.42108 * 110.54484 * 68.37707 * 12 11 10 15 15 N 1.65597 * 104.45133 * 180.02562 * 12 11 10 16 16 C 1.47233 * 121.34193 * 89.99896 * 15 12 11 17 17 C 1.52787 * 107.90825 * 115.74915 * 16 15 12 18 18 C 1.50603 * 110.86134 * 47.46693 * 17 16 15 19 19 C 1.38974 * 117.60120 * 159.95181 * 18 17 16 20 20 C 1.38035 * 120.59629 * 179.52002 * 19 18 17 21 21 Cl 1.73603 * 120.08695 * 179.89081 * 20 19 18 22 22 C 1.38349 * 119.81616 * 359.91622 * 20 19 18 23 23 C 1.38053 * 119.69145 * 0.24406 * 22 20 19 24 24 Cl 1.73597 * 119.75508 * 180.02562 * 23 22 20 25 25 C 1.37659 * 122.86079 * 339.84294 * 18 17 16 26 26 C 1.46689 * 121.33577 * 269.71711 * 15 12 11 27 27 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 29 29 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 30 30 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 31 31 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 32 32 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 33 33 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 34 34 H 1.08994 * 109.77281 * 235.35950 * 16 15 12 35 35 H 1.09000 * 109.76743 * 356.15143 * 16 15 12 36 36 H 1.09004 * 109.19629 * 167.82078 * 17 16 15 37 37 H 1.08996 * 109.20147 * 287.15178 * 17 16 15 38 38 H 1.07999 * 119.70299 * 359.50736 * 19 18 17 39 39 H 1.08004 * 120.15916 * 180.27327 * 22 20 19 40 40 H 1.08998 * 109.44012 * 344.50612 * 26 15 12 41 41 H 1.08996 * 109.43635 * 104.38577 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9872 0.0012 12 16 2.6588 -6.3660 0.0019 13 8 3.3557 -6.4270 -1.2350 14 8 3.3555 -6.4258 1.2391 15 7 1.7084 -7.7221 0.0019 16 6 1.2694 -8.3495 -1.2556 17 6 1.8920 -9.7429 -1.3278 18 6 1.7069 -10.4810 -0.0282 19 6 1.8205 -11.8659 -0.0524 20 6 1.6722 -12.6033 1.1051 21 17 1.8138 -14.3329 1.0592 22 6 1.4098 -11.9602 2.3016 23 6 1.2933 -10.5848 2.3275 24 17 0.9648 -9.7761 3.8280 25 6 1.4365 -9.8429 1.1612 26 6 1.2752 -8.3501 1.2548 27 1 -0.4850 0.8400 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8904 30 1 2.8718 -3.6044 0.8905 31 1 2.8717 -3.6045 -0.8894 32 1 0.8537 -5.0446 0.8914 33 1 0.8531 -5.0451 -0.8886 34 1 0.1825 -8.4301 -1.2677 35 1 1.6049 -7.7514 -2.1028 36 1 1.4170 -10.3065 -2.1309 37 1 2.9574 -9.6491 -1.5375 38 1 2.0264 -12.3697 -0.9852 39 1 1.2971 -12.5314 3.2113 40 1 1.8803 -7.9715 2.0785 41 1 0.2271 -8.1122 1.4362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096460013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:54 Heat of formation + Delta-G solvation = -93.971087 kcal Electronic energy + Delta-G solvation = -27075.440964 eV Core-core repulsion = 22939.536632 eV Total energy + Delta-G solvation = -4135.904332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 377.041 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25940 -38.32431 -38.23377 -37.80121 -37.12356 -36.91090 -36.46485 -34.16474 -33.78239 -32.25150 -30.42779 -29.65206 -26.39996 -25.56159 -24.95872 -23.54322 -22.41738 -21.61455 -19.74053 -18.87784 -18.59132 -18.14622 -17.43183 -17.34762 -16.81042 -16.61575 -16.44308 -16.02356 -15.94560 -15.46284 -15.17555 -14.84972 -14.51084 -14.47251 -14.06616 -13.81503 -13.67592 -13.53797 -13.39631 -13.29078 -13.22907 -13.20462 -13.02716 -12.97828 -12.75907 -12.63465 -12.41526 -12.31045 -12.15434 -11.92912 -11.86450 -11.75502 -11.68033 -11.38128 -11.11637 -10.57417 -10.17135 -9.80978 -9.64204 -8.22777 -6.33556 -0.84860 -0.15499 -0.02889 0.76047 1.20774 1.40360 1.40885 1.52237 1.57151 2.27015 2.39717 2.76335 3.05509 3.10797 3.37666 3.49203 3.64912 3.83320 3.88224 3.92987 3.98809 4.06938 4.25625 4.33528 4.38920 4.47031 4.50783 4.57582 4.63801 4.79311 4.85452 4.87687 4.95593 5.00928 5.05981 5.11307 5.33880 5.45392 5.45444 5.49000 5.63016 5.79432 6.19645 6.82022 7.35651 8.88530 Molecular weight = 377.04amu Principal moments of inertia in cm(-1) A = 0.020447 B = 0.001952 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.086168 B =14339.650284 C =15100.718325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.002 3.998 3 Si 0.962 3.038 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.606 4.606 12 S 2.622 3.378 13 O -0.977 6.977 14 O -0.986 6.986 15 N -1.000 6.000 16 C 0.108 3.892 17 C -0.097 4.097 18 C -0.047 4.047 19 C -0.102 4.102 20 C -0.029 4.029 21 Cl -0.054 7.054 22 C -0.107 4.107 23 C -0.031 4.031 24 Cl -0.055 7.055 25 C -0.086 4.086 26 C 0.148 3.852 27 H 0.265 0.735 28 H 0.005 0.995 29 H 0.003 0.997 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.100 0.900 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 -30.107 0.082 30.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.787 3.213 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.190 1.190 7 C -0.590 4.590 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.737 4.737 12 S 2.720 3.280 13 O -0.967 6.967 14 O -0.977 6.977 15 N -0.837 5.837 16 C -0.016 4.016 17 C -0.135 4.135 18 C -0.047 4.047 19 C -0.121 4.121 20 C -0.056 4.056 21 Cl -0.025 7.025 22 C -0.126 4.126 23 C -0.058 4.058 24 Cl -0.026 7.026 25 C -0.089 4.089 26 C 0.023 3.977 27 H 0.074 0.926 28 H 0.023 0.977 29 H 0.021 0.979 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.168 0.832 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.103 0.897 38 H 0.180 0.820 39 H 0.174 0.826 40 H 0.118 0.882 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.118 -30.079 0.210 30.080 hybrid contribution -0.397 1.156 0.489 1.317 sum -0.515 -28.922 0.700 28.936 Atomic orbital electron populations 1.70066 1.07572 1.27873 1.51344 1.25931 0.95830 1.03196 0.94626 0.85489 0.78692 0.78582 0.78581 1.19661 1.20591 1.18980 1.21741 0.93730 0.92531 1.51032 0.92199 1.18957 0.93993 0.91738 0.95993 1.21323 0.98712 0.92531 1.02050 1.30544 1.16547 1.13334 1.13321 1.04534 0.75399 0.75018 0.73043 1.93530 1.70845 1.86290 1.46045 1.93525 1.71307 1.86293 1.46533 1.57690 1.70749 1.42650 1.12648 1.21803 1.01561 0.93675 0.84560 1.20949 1.03190 0.95468 0.93897 1.19571 0.97372 0.92996 0.94807 1.21428 0.99310 0.92796 0.98542 1.20723 1.04366 0.85696 0.94862 1.98395 1.96309 1.09017 1.98761 1.20951 1.00809 0.92121 0.98736 1.20738 1.05030 0.92537 0.87510 1.98404 1.93507 1.79339 1.31340 1.19686 1.01077 0.95992 0.92105 1.20392 1.02672 0.88543 0.86123 0.92641 0.97677 0.97903 0.91769 0.91408 0.83747 0.83215 0.87677 0.87566 0.85517 0.89739 0.81996 0.82636 0.88241 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.21 13.29 21.45 0.28 -54.92 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.03 1.60 4.97 29.85 0.15 1.75 16 10 C -0.11 -4.25 5.16 30.60 0.16 -4.09 16 11 C -0.61 -17.37 6.18 71.98 0.44 -16.92 16 12 S 2.62 72.55 5.47 -56.49 -0.31 72.24 16 13 O -0.98 -31.22 16.77 -127.65 -2.14 -33.36 16 14 O -0.99 -33.57 16.62 -127.65 -2.12 -35.69 16 15 N -1.00 -19.89 3.19 -518.48 -1.66 -21.55 16 16 C 0.11 1.50 6.35 86.17 0.55 2.04 16 17 C -0.10 -1.16 5.87 29.75 0.17 -0.98 16 18 C -0.05 -0.70 5.76 -19.86 -0.11 -0.81 16 19 C -0.10 -1.30 9.37 22.40 0.21 -1.09 16 20 C -0.03 -0.42 6.31 22.25 0.14 -0.28 16 21 Cl -0.05 -0.69 28.96 -2.72 -0.08 -0.77 16 22 C -0.11 -1.62 9.61 22.25 0.21 -1.41 16 23 C -0.03 -0.53 6.31 22.40 0.14 -0.39 16 24 Cl -0.06 -0.99 27.44 -2.72 -0.07 -1.07 16 25 C -0.09 -1.54 5.81 -19.91 -0.12 -1.66 16 26 C 0.15 2.81 5.42 85.52 0.46 3.28 16 27 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 28 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 30 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 32 H 0.14 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.15 3.62 8.14 -2.39 -0.02 3.60 16 34 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.11 1.45 7.12 -2.39 -0.02 1.43 16 36 H 0.13 0.69 8.10 -2.38 -0.02 0.67 16 37 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.16 1.29 8.05 -2.91 -0.02 1.26 16 39 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.10 2.21 6.29 -2.39 -0.02 2.20 16 41 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -73.08 381.25 0.09 -72.99 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.05 Total: 7.07 kcal Atomic # 6 Polarization: -53.98 SS G_CDS: 3.11 Total: -50.88 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -1.37 Total: -76.47 kcal Atomic # 8 Polarization: -64.80 SS G_CDS: -4.26 Total: -69.06 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 72.55 SS G_CDS: -0.31 Total: 72.24 kcal Atomic # 17 Polarization: -1.68 SS G_CDS: -0.15 Total: -1.84 kcal Total: -73.08 0.09 -72.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096460013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.978 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds