Wall clock time and date at job start Tue Mar 31 2020 05:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48500 * 109.47164 * 240.00251 * 3 2 1 5 5 H 1.48501 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47218 * 120.00169 * 3 2 1 7 7 C 1.37874 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99988 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47104 * 180.02562 * 9 7 2 11 11 C 1.46494 * 119.99897 * 84.99998 * 10 9 7 12 12 C 1.52994 * 109.47462 * 65.59794 * 11 10 9 13 13 H 1.09000 * 110.74956 * 302.49518 * 12 11 10 14 14 C 1.55565 * 110.84156 * 178.82032 * 12 11 10 15 15 C 1.54946 * 100.82372 * 207.68398 * 14 12 11 16 16 O 1.43646 * 105.22529 * 36.44428 * 15 14 12 17 17 C 1.43241 * 109.96933 * 335.51654 * 16 15 14 18 18 S 1.65598 * 120.00094 * 265.00371 * 10 9 7 19 19 O 1.42098 * 106.40289 * 197.11010 * 18 10 9 20 20 O 1.42106 * 106.40140 * 330.02406 * 18 10 9 21 21 C 1.76192 * 107.22341 * 83.56230 * 18 10 9 22 22 C 1.38453 * 120.02261 * 262.07611 * 21 18 10 23 23 F 1.35102 * 120.02118 * 359.97438 * 22 21 18 24 24 C 1.38453 * 119.95994 * 179.69517 * 22 21 18 25 25 C 1.38225 * 120.00402 * 0.57855 * 24 22 21 26 26 C 1.38209 * 120.03595 * 359.71932 * 25 24 22 27 27 C 1.38298 * 120.01686 * 82.34753 * 21 18 10 28 28 Cl 1.73602 * 119.99942 * 359.97438 * 27 21 18 29 29 H 0.97004 * 119.99911 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46923 * 60.00214 * 9 7 2 31 31 H 1.09001 * 109.46768 * 300.00066 * 9 7 2 32 32 H 1.09006 * 109.47444 * 305.59526 * 11 10 9 33 33 H 1.09001 * 109.47268 * 185.59725 * 11 10 9 34 34 H 1.08994 * 111.22446 * 89.78564 * 14 12 11 35 35 H 1.08995 * 111.13035 * 325.54125 * 14 12 11 36 36 H 1.08998 * 110.31051 * 277.47643 * 15 14 12 37 37 H 1.09005 * 110.31016 * 155.40483 * 15 14 12 38 38 H 1.08996 * 109.83025 * 121.22604 * 17 16 15 39 39 H 1.09001 * 109.83313 * 242.20493 * 17 16 15 40 40 H 1.08007 * 119.99870 * 180.29155 * 24 22 21 41 41 H 1.07997 * 119.98338 * 179.74108 * 25 24 22 42 42 H 1.07992 * 119.98111 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7631 -4.0975 1.2633 12 6 1.6478 -4.7076 2.1147 13 1 0.8574 -3.9791 2.2952 14 6 2.2135 -5.2603 3.4543 15 6 1.1918 -6.3844 3.7598 16 8 0.8546 -6.9455 2.4812 17 6 1.0809 -5.9795 1.4480 18 16 2.6462 -4.3232 -1.4292 19 8 3.2262 -5.5757 -1.0915 20 8 1.5342 -4.1924 -2.3043 21 6 3.9396 -3.3456 -2.1189 22 6 3.6530 -2.4068 -3.0954 23 9 2.3814 -2.2402 -3.5204 24 6 4.6694 -1.6349 -3.6320 25 6 5.9712 -1.8099 -3.2014 26 6 6.2582 -2.7513 -2.2311 27 6 5.2426 -3.5194 -1.6892 28 17 5.6040 -4.7006 -0.4694 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 3.2179 -3.2661 1.8020 33 1 3.5196 -4.8551 1.0587 34 1 2.2022 -4.4970 4.2322 35 1 3.2159 -5.6666 3.3196 36 1 0.3040 -5.9693 4.2368 37 1 1.6439 -7.1432 4.3986 38 1 1.7989 -6.3704 0.7271 39 1 0.1412 -5.7468 0.9470 40 1 4.4458 -0.8991 -4.3904 41 1 6.7644 -1.2105 -3.6232 42 1 7.2755 -2.8870 -1.8950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096503239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:10 Heat of formation + Delta-G solvation = -130.421063 kcal Electronic energy + Delta-G solvation = -32328.463316 eV Core-core repulsion = 27762.642020 eV Total energy + Delta-G solvation = -4565.821296 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.070 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.78151 -39.24934 -39.06143 -36.87705 -36.41283 -35.99484 -35.33552 -32.93783 -31.72359 -31.31279 -30.48990 -29.21988 -27.23047 -24.94643 -23.61473 -22.94276 -22.65551 -22.05179 -20.16663 -18.84206 -17.92689 -17.30622 -16.90804 -16.79262 -16.44722 -16.19676 -15.65795 -15.41445 -15.31250 -15.02084 -14.68988 -14.52763 -14.44977 -13.71133 -13.53302 -13.41479 -13.24203 -13.00967 -12.66004 -12.49369 -12.24649 -12.04825 -11.94905 -11.74941 -11.56015 -11.46924 -11.38598 -11.27996 -11.16457 -10.97741 -10.87373 -10.66934 -10.60262 -10.38703 -10.28947 -10.10121 -9.84407 -9.41850 -9.26347 -8.73573 -8.55088 -8.16851 -6.17148 -4.23974 0.52297 0.92117 0.98066 1.87079 3.13628 3.19463 3.26050 3.26241 3.50769 4.06503 4.18320 4.20996 4.30451 4.39681 4.64122 4.70522 4.97281 4.99527 5.09891 5.15441 5.19205 5.25210 5.38563 5.50383 5.58546 5.61843 5.70817 5.73760 5.83630 5.87418 5.93622 6.00869 6.05118 6.07792 6.28494 6.39987 6.56038 6.59634 7.20878 7.23945 7.32048 7.51405 7.78376 8.06731 8.79508 9.42269 10.90821 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.005619 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.203571 B = 4982.192915 C = 6792.472801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.243 3.757 10 N -0.974 5.974 11 C 0.135 3.865 12 C -0.133 4.133 13 H 0.099 0.901 14 C -0.149 4.149 15 C 0.052 3.948 16 O -0.387 6.387 17 C 0.046 3.954 18 S 2.681 3.319 19 O -0.956 6.956 20 O -0.943 6.943 21 C -0.706 4.706 22 C 0.231 3.769 23 F -0.095 7.095 24 C -0.177 4.177 25 C -0.032 4.032 26 C -0.151 4.151 27 C 0.079 3.921 28 Cl -0.028 7.028 29 H 0.266 0.734 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.569 -5.793 0.024 12.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.121 3.879 10 N -0.813 5.813 11 C 0.008 3.992 12 C -0.154 4.154 13 H 0.117 0.883 14 C -0.188 4.188 15 C -0.025 4.025 16 O -0.307 6.307 17 C -0.031 4.031 18 S 2.767 3.233 19 O -0.946 6.946 20 O -0.933 6.933 21 C -0.790 4.790 22 C 0.210 3.790 23 F -0.072 7.072 24 C -0.196 4.196 25 C -0.050 4.050 26 C -0.171 4.171 27 C 0.050 3.950 28 Cl 0.001 6.999 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.966 -6.683 -0.320 12.846 hybrid contribution 0.860 2.099 0.055 2.269 sum 11.827 -4.584 -0.265 12.687 Atomic orbital electron populations 1.69909 1.05917 1.27308 1.49193 1.24894 0.94773 0.99007 0.94809 0.86704 0.79743 0.83223 0.78697 1.20179 1.21024 1.20128 1.21449 0.93389 0.90788 1.52637 0.92253 1.19297 0.87138 0.81495 0.99921 1.57398 1.56400 1.49456 1.18054 1.21205 0.94472 0.98733 0.84744 1.23140 0.99880 0.97731 0.94614 0.88302 1.23303 0.99709 0.98401 0.97343 1.23320 0.97066 0.95527 0.86575 1.88364 1.88246 1.38700 1.15369 1.23368 1.00934 0.87946 0.90815 1.02460 0.73444 0.73660 0.73726 1.93592 1.79053 1.38408 1.83535 1.93611 1.48451 1.86386 1.64852 1.31103 1.15243 1.19336 1.13309 1.16896 0.80178 0.91522 0.90433 1.91737 1.34835 1.93409 1.87263 1.21358 0.92633 1.01830 1.03811 1.21161 0.96024 0.94548 0.93291 1.21126 0.99126 0.97596 0.99238 1.20194 0.92361 0.91348 0.91050 1.98440 1.94550 1.54881 1.51982 0.92440 0.92875 0.93599 0.90325 0.89760 0.89671 0.90291 0.92366 0.90172 0.90218 0.91355 0.83449 0.83664 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -13.80 9.38 -34.44 -0.32 -14.13 16 8 H 0.06 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.24 5.78 5.34 -5.19 -0.03 5.75 16 10 N -0.97 -19.52 2.67 -115.67 -0.31 -19.83 16 11 C 0.13 2.27 5.08 -4.05 -0.02 2.25 16 12 C -0.13 -2.09 3.00 -88.53 -0.27 -2.35 16 13 H 0.10 1.65 6.89 -51.93 -0.36 1.29 16 14 C -0.15 -1.85 6.64 -24.34 -0.16 -2.02 16 15 C 0.05 0.66 7.77 38.18 0.30 0.95 16 16 O -0.39 -6.35 11.36 -35.23 -0.40 -6.75 16 17 C 0.05 0.77 7.21 37.88 0.27 1.04 16 18 S 2.68 54.18 5.37 -107.50 -0.58 53.60 16 19 O -0.96 -18.50 12.59 -57.17 -0.72 -19.22 16 20 O -0.94 -21.87 14.65 -57.17 -0.84 -22.70 16 21 C -0.71 -13.02 5.97 -39.48 -0.24 -13.25 16 22 C 0.23 4.23 7.22 -39.42 -0.28 3.95 16 23 F -0.09 -1.99 15.14 2.25 0.03 -1.95 16 24 C -0.18 -2.50 10.03 -39.51 -0.40 -2.89 16 25 C -0.03 -0.36 10.04 -39.60 -0.40 -0.76 16 26 C -0.15 -1.87 9.83 -39.54 -0.39 -2.26 16 27 C 0.08 1.23 6.30 -39.50 -0.25 0.98 16 28 Cl -0.03 -0.41 24.34 -51.86 -1.26 -1.68 16 29 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 30 H 0.05 1.41 7.01 -51.93 -0.36 1.05 16 31 H 0.05 1.11 6.74 -51.93 -0.35 0.76 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.08 1.34 5.24 -51.93 -0.27 1.06 16 34 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.41 6.60 -51.93 -0.34 1.06 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.15 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -31.08 371.05 -10.07 -41.15 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.03 Total: 1.40 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: -2.28 Total: -21.01 kcal Atomic # 7 Polarization: -44.17 SS G_CDS: 0.43 Total: -43.74 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -1.96 Total: -48.67 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.03 Total: -1.95 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 54.18 SS G_CDS: -0.58 Total: 53.60 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.26 Total: -1.68 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.08 -10.07 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096503239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.269 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds