Wall clock time and date at job start Tue Mar 31 2020 05:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99953 * 2 1 4 4 H 1.48500 * 109.47164 * 240.00251 * 3 2 1 5 5 H 1.48501 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47218 * 120.00169 * 3 2 1 7 7 C 1.37874 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99800 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99988 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47104 * 180.02562 * 9 7 2 11 11 C 1.46494 * 119.99897 * 84.99998 * 10 9 7 12 12 C 1.52994 * 109.47462 * 65.59794 * 11 10 9 13 13 H 1.09000 * 110.74956 * 302.49518 * 12 11 10 14 14 C 1.55565 * 110.84156 * 178.82032 * 12 11 10 15 15 C 1.54946 * 100.82372 * 207.68398 * 14 12 11 16 16 O 1.43646 * 105.22529 * 36.44428 * 15 14 12 17 17 C 1.43241 * 109.96933 * 335.51654 * 16 15 14 18 18 S 1.65598 * 120.00094 * 265.00371 * 10 9 7 19 19 O 1.42098 * 106.40289 * 197.11010 * 18 10 9 20 20 O 1.42106 * 106.40140 * 330.02406 * 18 10 9 21 21 C 1.76192 * 107.22341 * 83.56230 * 18 10 9 22 22 C 1.38453 * 120.02261 * 262.07611 * 21 18 10 23 23 F 1.35102 * 120.02118 * 359.97438 * 22 21 18 24 24 C 1.38453 * 119.95994 * 179.69517 * 22 21 18 25 25 C 1.38225 * 120.00402 * 0.57855 * 24 22 21 26 26 C 1.38209 * 120.03595 * 359.71932 * 25 24 22 27 27 C 1.38298 * 120.01686 * 82.34753 * 21 18 10 28 28 Cl 1.73602 * 119.99942 * 359.97438 * 27 21 18 29 29 H 0.97004 * 119.99911 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.46923 * 60.00214 * 9 7 2 31 31 H 1.09001 * 109.46768 * 300.00066 * 9 7 2 32 32 H 1.09006 * 109.47444 * 305.59526 * 11 10 9 33 33 H 1.09001 * 109.47268 * 185.59725 * 11 10 9 34 34 H 1.08994 * 111.22446 * 89.78564 * 14 12 11 35 35 H 1.08995 * 111.13035 * 325.54125 * 14 12 11 36 36 H 1.08998 * 110.31051 * 277.47643 * 15 14 12 37 37 H 1.09005 * 110.31016 * 155.40483 * 15 14 12 38 38 H 1.08996 * 109.83025 * 121.22604 * 17 16 15 39 39 H 1.09001 * 109.83313 * 242.20493 * 17 16 15 40 40 H 1.08007 * 119.99870 * 180.29155 * 24 22 21 41 41 H 1.07997 * 119.98338 * 179.74108 * 25 24 22 42 42 H 1.07992 * 119.98111 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 2.7631 -4.0975 1.2633 12 6 1.6478 -4.7076 2.1147 13 1 0.8574 -3.9791 2.2952 14 6 2.2135 -5.2603 3.4543 15 6 1.1918 -6.3844 3.7598 16 8 0.8546 -6.9455 2.4812 17 6 1.0809 -5.9795 1.4480 18 16 2.6462 -4.3232 -1.4292 19 8 3.2262 -5.5757 -1.0915 20 8 1.5342 -4.1924 -2.3043 21 6 3.9396 -3.3456 -2.1189 22 6 3.6530 -2.4068 -3.0954 23 9 2.3814 -2.2402 -3.5204 24 6 4.6694 -1.6349 -3.6320 25 6 5.9712 -1.8099 -3.2014 26 6 6.2582 -2.7513 -2.2311 27 6 5.2426 -3.5194 -1.6892 28 17 5.6040 -4.7006 -0.4694 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 3.2179 -3.2661 1.8020 33 1 3.5196 -4.8551 1.0587 34 1 2.2022 -4.4970 4.2322 35 1 3.2159 -5.6666 3.3196 36 1 0.3040 -5.9693 4.2368 37 1 1.6439 -7.1432 4.3986 38 1 1.7989 -6.3704 0.7271 39 1 0.1412 -5.7468 0.9470 40 1 4.4458 -0.8991 -4.3904 41 1 6.7644 -1.2105 -3.6232 42 1 7.2755 -2.8870 -1.8950 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096503239.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:09 Heat of formation + Delta-G solvation = -150.464768 kcal Electronic energy + Delta-G solvation = -32329.332476 eV Core-core repulsion = 27762.642020 eV Total energy + Delta-G solvation = -4566.690457 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.070 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.19933 -40.49660 -40.17949 -38.41866 -37.65555 -37.55817 -36.98329 -34.78854 -33.16808 -32.46173 -31.60347 -30.48865 -29.00866 -26.49794 -24.81028 -24.48174 -24.03646 -23.16878 -21.51310 -20.27290 -19.37111 -18.78007 -18.57169 -18.10000 -18.01851 -17.49712 -17.08830 -16.81233 -16.78693 -16.30733 -16.15278 -15.83927 -15.69888 -15.35772 -14.88459 -14.67595 -14.50632 -14.45507 -14.11556 -13.78735 -13.67561 -13.60991 -13.34341 -13.18194 -13.07698 -12.99660 -12.83600 -12.66168 -12.49349 -12.38052 -12.35244 -12.30995 -12.06444 -11.79549 -11.70889 -11.67386 -11.46379 -10.64032 -10.54897 -10.51390 -9.88149 -9.84008 -8.17958 -6.31669 -0.77956 -0.48928 -0.15515 0.72098 1.39860 1.41261 1.49152 1.83335 2.17468 2.40885 2.60336 2.93403 3.00253 3.09348 3.14809 3.48923 3.69574 3.72611 3.82213 3.92589 4.06119 4.12944 4.15493 4.28262 4.37071 4.40947 4.47855 4.66617 4.71928 4.78347 4.84692 4.87531 4.94526 4.98441 4.99746 5.04901 5.21473 5.30422 5.44862 5.53006 5.69753 5.83926 6.01723 6.07110 6.78278 7.38106 8.90072 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.008018 B = 0.005619 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3491.203571 B = 4982.192915 C = 6792.472801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.016 3.984 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.262 3.738 10 N -0.977 5.977 11 C 0.132 3.868 12 C -0.135 4.135 13 H 0.083 0.917 14 C -0.138 4.138 15 C 0.044 3.956 16 O -0.405 6.405 17 C 0.047 3.953 18 S 2.682 3.318 19 O -0.955 6.955 20 O -0.987 6.987 21 C -0.728 4.728 22 C 0.186 3.814 23 F -0.126 7.126 24 C -0.175 4.175 25 C -0.009 4.009 26 C -0.136 4.136 27 C 0.062 3.938 28 Cl -0.026 7.026 29 H 0.265 0.735 30 H 0.014 0.986 31 H 0.034 0.966 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.173 0.827 41 H 0.203 0.797 42 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.851 -4.558 0.799 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.184 4.184 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.581 4.581 8 H 0.084 0.916 9 C 0.139 3.861 10 N -0.816 5.816 11 C 0.007 3.993 12 C -0.156 4.156 13 H 0.101 0.899 14 C -0.176 4.176 15 C -0.032 4.032 16 O -0.325 6.325 17 C -0.030 4.030 18 S 2.773 3.227 19 O -0.946 6.946 20 O -0.978 6.978 21 C -0.816 4.816 22 C 0.165 3.835 23 F -0.104 7.104 24 C -0.194 4.194 25 C -0.027 4.027 26 C -0.155 4.155 27 C 0.034 3.966 28 Cl 0.003 6.997 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.052 0.948 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.126 0.874 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.190 0.810 41 H 0.220 0.780 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 15.239 -5.499 0.493 16.208 hybrid contribution -0.354 1.654 -0.218 1.705 sum 14.885 -3.845 0.274 15.376 Atomic orbital electron populations 1.70052 1.07602 1.28060 1.50680 1.25744 0.95509 1.02610 0.94576 0.85717 0.78601 0.78787 0.79400 1.19077 1.21208 1.18761 1.21690 0.93674 0.91218 1.51500 0.91578 1.18785 0.87324 0.82576 0.97445 1.57242 1.56428 1.48458 1.19442 1.21420 0.95014 0.99248 0.83621 1.23107 0.99316 0.96745 0.96413 0.89874 1.23325 1.00065 0.98655 0.95568 1.23618 0.97793 0.96500 0.85294 1.88340 1.88542 1.38972 1.16630 1.23236 0.99829 0.88739 0.91179 1.01992 0.73473 0.73957 0.73303 1.93578 1.78855 1.38627 1.83497 1.93552 1.51129 1.87116 1.65987 1.30663 1.15587 1.20482 1.14872 1.17477 0.80162 0.93653 0.92228 1.91654 1.37080 1.93858 1.87830 1.21815 0.92766 1.01122 1.03735 1.21870 0.95934 0.93449 0.91402 1.21730 1.00036 0.95798 0.97948 1.20483 0.92114 0.92322 0.91706 1.98434 1.94302 1.54996 1.51961 0.92554 0.96767 0.94836 0.89532 0.88558 0.87477 0.88884 0.91586 0.87368 0.91343 0.93138 0.80992 0.77995 0.79649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.22 13.29 21.45 0.28 -52.93 16 2 C 0.02 0.83 5.46 84.65 0.46 1.30 16 3 Si 0.95 41.20 29.54 68.60 2.03 43.23 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.54 -28.09 9.38 25.60 0.24 -27.85 16 8 H 0.07 3.27 7.81 -2.91 -0.02 3.25 16 9 C 0.26 13.21 5.34 85.63 0.46 13.66 16 10 N -0.98 -40.95 2.67 -519.85 -1.39 -42.34 16 11 C 0.13 4.50 5.08 86.38 0.44 4.94 16 12 C -0.14 -4.32 3.00 -9.44 -0.03 -4.35 16 13 H 0.08 2.91 6.89 -2.39 -0.02 2.89 16 14 C -0.14 -3.19 6.64 32.14 0.21 -2.98 16 15 C 0.04 1.04 7.77 72.65 0.56 1.60 16 16 O -0.40 -13.32 11.36 -148.98 -1.69 -15.01 16 17 C 0.05 1.65 7.21 72.45 0.52 2.18 16 18 S 2.68 113.89 5.37 -56.49 -0.30 113.59 16 19 O -0.96 -38.21 12.59 -128.00 -1.61 -39.82 16 20 O -0.99 -49.73 14.65 -128.00 -1.87 -51.60 16 21 C -0.73 -26.94 5.97 22.34 0.13 -26.81 16 22 C 0.19 6.85 7.22 22.37 0.16 7.01 16 23 F -0.13 -5.62 15.14 44.97 0.68 -4.93 16 24 C -0.18 -4.46 10.03 22.32 0.22 -4.24 16 25 C -0.01 -0.15 10.04 22.26 0.22 0.07 16 26 C -0.14 -2.72 9.83 22.30 0.22 -2.50 16 27 C 0.06 1.82 6.30 22.32 0.14 1.96 16 28 Cl -0.03 -0.73 24.34 -2.72 -0.07 -0.80 16 29 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.01 0.83 7.01 -2.39 -0.02 0.81 16 31 H 0.03 1.74 6.74 -2.39 -0.02 1.73 16 32 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 33 H 0.10 3.03 5.24 -2.39 -0.01 3.02 16 34 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.91 8.04 -2.39 -0.02 1.89 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.07 2.54 6.60 -2.39 -0.02 2.52 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.17 3.40 8.06 -2.91 -0.02 3.38 16 41 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.19 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -73.06 371.05 1.09 -71.97 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 1.06 Total: 14.66 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 3.97 Total: -36.00 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -1.10 Total: -95.27 kcal Atomic # 8 Polarization: -101.25 SS G_CDS: -5.18 Total: -106.43 kcal Atomic # 9 Polarization: -5.62 SS G_CDS: 0.68 Total: -4.93 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 113.89 SS G_CDS: -0.30 Total: 113.59 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.07 Total: -0.80 kcal Total: -73.06 1.09 -71.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096503239.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.498 kcal (2) G-P(sol) polarization free energy of solvation -73.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds