Wall clock time and date at job start Tue Mar 31 2020 05:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86805 * 119.99780 * 2 1 4 4 H 1.48496 * 109.47288 * 269.99314 * 3 2 1 5 5 H 1.48500 * 109.47132 * 30.00093 * 3 2 1 6 6 H 1.48508 * 109.46898 * 149.99569 * 3 2 1 7 7 C 1.37878 * 120.00560 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99285 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00386 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47003 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00259 * 85.00132 * 10 9 7 12 12 C 1.52999 * 109.46938 * 283.55203 * 11 10 9 13 13 H 1.08994 * 110.45995 * 51.71185 * 12 11 10 14 14 C 1.54511 * 110.51163 * 174.31883 * 12 11 10 15 15 C 1.54479 * 104.06319 * 118.77735 * 14 12 11 16 16 O 1.44426 * 104.80315 * 23.98209 * 15 14 12 17 17 C 1.44426 * 105.27242 * 319.48236 * 16 15 14 18 18 S 1.65598 * 120.00025 * 264.99692 * 10 9 7 19 19 O 1.42107 * 106.39994 * 29.22811 * 18 10 9 20 20 O 1.42102 * 106.40334 * 162.14490 * 18 10 9 21 21 C 1.76199 * 107.22120 * 275.68870 * 18 10 9 22 22 C 1.38463 * 120.01817 * 89.99539 * 21 18 10 23 23 F 1.35093 * 120.02060 * 359.97438 * 22 21 18 24 24 C 1.38450 * 119.95946 * 179.97438 * 22 21 18 25 25 C 1.38228 * 120.00089 * 0.02562 * 24 22 21 26 26 C 1.38209 * 120.03616 * 359.97420 * 25 24 22 27 27 C 1.38287 * 120.01794 * 269.72218 * 21 18 10 28 28 Cl 1.73601 * 120.00053 * 359.97438 * 27 21 18 29 29 H 0.97001 * 120.00558 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47041 * 60.00285 * 9 7 2 31 31 H 1.09001 * 109.47075 * 299.99943 * 9 7 2 32 32 H 1.08995 * 109.47255 * 163.54661 * 11 10 9 33 33 H 1.09003 * 109.46703 * 43.55074 * 11 10 9 34 34 H 1.09003 * 110.51009 * 237.42750 * 14 12 11 35 35 H 1.09006 * 110.50825 * 359.97438 * 14 12 11 36 36 H 1.09000 * 110.36910 * 142.81153 * 15 14 12 37 37 H 1.08992 * 110.37199 * 265.14441 * 15 14 12 38 38 H 1.08993 * 110.37569 * 281.68277 * 17 16 15 39 39 H 1.09003 * 110.36745 * 159.34332 * 17 16 15 40 40 H 1.07996 * 119.99603 * 180.02562 * 24 22 21 41 41 H 1.07994 * 119.98099 * 179.97438 * 25 24 22 42 42 H 1.08000 * 119.97283 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0011 10 7 3.9998 -2.5752 0.0010 11 6 4.1403 -3.3024 -1.2630 12 6 2.7606 -3.7502 -1.7498 13 1 2.0706 -2.9066 -1.7675 14 6 2.8636 -4.3950 -3.1501 15 6 2.3618 -5.8402 -2.9357 16 8 1.5206 -5.7687 -1.7639 17 6 2.2089 -4.8822 -0.8550 18 16 4.3932 -3.3145 1.4296 19 8 3.5685 -2.7261 2.4262 20 8 4.4174 -4.7105 1.1657 21 6 6.0488 -2.8526 1.8175 22 6 6.2924 -1.7191 2.5745 23 9 5.2610 -0.9664 3.0158 24 6 7.5937 -1.3576 2.8790 25 6 8.6488 -2.1277 2.4269 26 6 8.4055 -3.2591 1.6712 27 6 7.1052 -3.6250 1.3707 28 17 6.8005 -5.0506 0.4281 29 1 -0.4851 0.8400 -0.0004 30 1 3.8744 -0.6799 0.8911 31 1 3.8751 -0.6803 -0.8889 32 1 4.7733 -4.1766 -1.1108 33 1 4.5947 -2.6502 -2.0088 34 1 2.2245 -3.8701 -3.8602 35 1 3.8974 -4.3943 -3.4958 36 1 1.7840 -6.1730 -3.7979 37 1 3.2022 -6.5113 -2.7592 38 1 3.0258 -5.4064 -0.3593 39 1 1.5134 -4.4790 -0.1188 40 1 7.7844 -0.4739 3.4698 41 1 9.6638 -1.8452 2.6642 42 1 9.2306 -3.8603 1.3188 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096503240.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:15 Heat of formation + Delta-G solvation = -118.875724 kcal Electronic energy + Delta-G solvation = -32338.534543 eV Core-core repulsion = 27773.213890 eV Total energy + Delta-G solvation = -4565.320653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 377.070 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.15803 -39.34660 -39.06789 -36.96683 -36.52268 -36.04820 -35.33045 -32.66472 -31.73547 -31.55059 -30.78022 -29.03447 -27.73651 -24.77460 -23.85578 -23.18636 -22.51773 -21.79748 -19.95538 -19.09171 -18.07962 -17.43102 -17.15942 -17.04661 -16.60942 -15.92096 -15.67826 -15.61333 -15.32942 -14.97790 -14.85413 -14.62699 -14.31946 -13.80372 -13.65043 -13.56675 -13.47935 -12.80205 -12.56345 -12.48513 -12.43918 -12.31276 -12.08968 -11.97540 -11.77485 -11.48965 -11.40685 -11.14409 -11.01519 -10.99442 -10.79896 -10.52496 -10.46125 -10.36597 -10.15036 -10.05807 -9.74231 -9.39377 -9.23818 -9.03724 -8.59912 -8.25148 -6.08522 -4.07871 0.23338 0.65104 0.75042 1.68270 2.86222 3.23892 3.31767 3.32752 3.44693 3.86882 4.06730 4.17298 4.36867 4.37515 4.44722 4.72040 4.92984 4.95760 5.04809 5.18685 5.19575 5.30538 5.32392 5.38488 5.47522 5.54568 5.65397 5.72586 5.74377 5.86176 5.97238 6.09942 6.12510 6.28066 6.29465 6.36976 6.52117 6.62723 6.89766 7.05790 7.25304 7.27733 7.54039 8.46539 8.96283 9.49837 11.04101 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.007778 B = 0.006053 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3599.191561 B = 4624.649825 C = 7263.195999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.077 3.923 3 Si 0.865 3.135 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.086 0.914 9 C 0.223 3.777 10 N -0.971 5.971 11 C 0.140 3.860 12 C -0.143 4.143 13 H 0.122 0.878 14 C -0.148 4.148 15 C 0.045 3.955 16 O -0.378 6.378 17 C 0.037 3.963 18 S 2.673 3.327 19 O -0.921 6.921 20 O -0.946 6.946 21 C -0.721 4.721 22 C 0.214 3.786 23 F -0.098 7.098 24 C -0.176 4.176 25 C -0.031 4.031 26 C -0.149 4.149 27 C 0.075 3.925 28 Cl -0.014 7.014 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.777 -6.176 -0.930 20.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.691 3.309 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.567 4.567 8 H 0.104 0.896 9 C 0.100 3.900 10 N -0.810 5.810 11 C 0.014 3.986 12 C -0.163 4.163 13 H 0.140 0.860 14 C -0.187 4.187 15 C -0.032 4.032 16 O -0.297 6.297 17 C -0.040 4.040 18 S 2.757 3.243 19 O -0.911 6.911 20 O -0.936 6.936 21 C -0.803 4.803 22 C 0.192 3.808 23 F -0.076 7.076 24 C -0.196 4.196 25 C -0.049 4.049 26 C -0.168 4.168 27 C 0.047 3.953 28 Cl 0.015 6.985 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 18.880 -6.762 -0.435 20.059 hybrid contribution 1.077 1.629 -0.095 1.955 sum 19.957 -5.134 -0.530 20.614 Atomic orbital electron populations 1.69876 1.06075 1.26956 1.49863 1.24820 0.94684 0.98632 0.94461 0.87028 0.80750 0.84550 0.78522 1.20084 1.20818 1.18917 1.21331 0.88690 0.95189 1.51531 0.89602 1.19570 0.96652 0.76311 0.97440 1.57296 1.77544 1.26012 1.20140 1.21295 0.96292 0.95465 0.85591 1.23117 0.99154 1.00724 0.93334 0.86034 1.22940 1.01654 0.96139 0.97922 1.23334 0.94331 0.96261 0.89294 1.89089 1.45167 1.67598 1.27854 1.23817 0.97664 0.89600 0.92873 1.02946 0.73078 0.74133 0.74103 1.93674 1.62295 1.77888 1.57230 1.93610 1.86375 1.28786 1.84816 1.31455 1.27798 1.06118 1.14905 1.17027 0.85351 0.87194 0.91192 1.91750 1.56459 1.73440 1.85967 1.21394 0.90741 1.03020 1.04396 1.21228 0.99423 0.91991 0.92293 1.21233 0.95144 0.98922 1.01510 1.20322 0.93311 0.88917 0.92744 1.98474 1.95559 1.35261 1.69177 0.92493 0.94920 0.95046 0.90427 0.90818 0.90606 0.90951 0.89837 0.92879 0.90211 0.89126 0.83215 0.83388 0.83543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.86 20.63 27.47 -169.99 -4.67 15.96 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.53 -14.24 8.48 -34.44 -0.29 -14.53 16 8 H 0.09 2.50 6.88 -52.48 -0.36 2.14 16 9 C 0.22 5.03 4.16 -5.19 -0.02 5.01 16 10 N -0.97 -18.88 2.76 -115.66 -0.32 -19.20 16 11 C 0.14 2.28 4.74 -4.04 -0.02 2.26 16 12 C -0.14 -2.53 2.85 -89.05 -0.25 -2.79 16 13 H 0.12 2.56 5.98 -51.93 -0.31 2.25 16 14 C -0.15 -2.08 6.74 -25.16 -0.17 -2.25 16 15 C 0.04 0.64 7.63 37.93 0.29 0.93 16 16 O -0.38 -7.10 11.65 -35.23 -0.41 -7.51 16 17 C 0.04 0.71 6.87 37.94 0.26 0.97 16 18 S 2.67 52.06 5.37 -107.50 -0.58 51.48 16 19 O -0.92 -21.69 15.39 -57.17 -0.88 -22.57 16 20 O -0.95 -17.72 11.05 -57.17 -0.63 -18.35 16 21 C -0.72 -11.53 5.98 -39.48 -0.24 -11.76 16 22 C 0.21 3.28 7.21 -39.42 -0.28 2.99 16 23 F -0.10 -1.81 14.86 2.25 0.03 -1.77 16 24 C -0.18 -1.90 10.03 -39.51 -0.40 -2.30 16 25 C -0.03 -0.26 10.04 -39.60 -0.40 -0.65 16 26 C -0.15 -1.42 9.83 -39.54 -0.39 -1.81 16 27 C 0.08 0.99 6.30 -39.51 -0.25 0.74 16 28 Cl -0.01 -0.19 24.44 -51.86 -1.27 -1.45 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.03 0.76 6.34 -51.93 -0.33 0.43 16 31 H 0.03 0.66 7.52 -51.93 -0.39 0.27 16 32 H 0.08 1.14 5.82 -51.93 -0.30 0.84 16 33 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.50 5.56 -51.93 -0.29 1.21 16 39 H 0.09 1.94 7.97 -51.93 -0.41 1.53 16 40 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -33.41 362.86 -9.66 -43.07 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.92 Total: 1.87 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -2.26 Total: -21.11 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: 0.45 Total: -45.09 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.92 Total: -48.43 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 52.06 SS G_CDS: -0.58 Total: 51.48 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.27 Total: -1.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.41 -9.66 -43.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096503240.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.803 kcal (2) G-P(sol) polarization free energy of solvation -33.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds