Wall clock time and date at job start Tue Mar 31 2020 05:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38221 * 119.98918 * 2 1 4 4 C 1.38429 * 119.97424 * 179.97438 * 3 2 1 5 5 F 1.35102 * 120.02824 * 180.02562 * 4 3 2 6 6 C 1.38480 * 119.95268 * 0.02562 * 4 3 2 7 7 C 1.38180 * 119.97296 * 359.97438 * 6 4 3 8 8 S 1.76198 * 119.98977 * 180.02562 * 7 6 4 9 9 O 1.42098 * 106.40122 * 336.46464 * 8 7 6 10 10 O 1.42098 * 106.40335 * 203.54128 * 8 7 6 11 11 N 1.65596 * 107.21784 * 90.00242 * 8 7 6 12 12 C 1.29039 * 120.00188 * 179.97438 * 11 8 7 13 13 O 1.34917 * 119.99731 * 0.02562 * 12 11 8 14 14 C 1.50706 * 119.99956 * 179.97438 * 12 11 8 15 15 C 1.50691 * 109.47231 * 0.02562 * 14 12 11 16 16 C 1.37635 * 120.12773 * 264.99516 * 15 14 12 17 17 C 1.38613 * 120.24811 * 180.02562 * 16 15 14 18 18 C 1.38655 * 120.50520 * 359.97438 * 17 16 15 19 19 C 1.37597 * 120.24241 * 0.02562 * 18 17 16 20 20 C 1.40701 * 120.12945 * 84.72160 * 15 14 12 21 21 C 1.41402 * 120.24192 * 359.97438 * 20 15 14 22 22 H 1.07998 * 119.99764 * 333.89323 * 21 20 15 23 23 C 1.39948 * 119.99697 * 153.89358 * 21 20 15 24 24 N 1.30825 * 120.00097 * 343.71378 * 23 21 20 25 25 Si 1.86804 * 119.99727 * 163.71882 * 23 21 20 26 26 H 1.48493 * 109.47157 * 59.99801 * 25 23 21 27 27 H 1.48496 * 109.46792 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46813 * 299.99850 * 25 23 21 29 29 C 1.38228 * 119.98342 * 180.27605 * 2 1 3 30 30 H 1.09004 * 109.47045 * 89.99736 * 1 2 3 31 31 H 1.08995 * 109.47248 * 209.99509 * 1 2 3 32 32 H 1.09006 * 109.46686 * 329.99829 * 1 2 3 33 33 H 1.08000 * 120.00876 * 0.02733 * 3 2 1 34 34 H 1.08002 * 120.01929 * 180.02562 * 6 4 3 35 35 H 0.96708 * 113.99504 * 179.97438 * 13 12 11 36 36 H 1.09001 * 109.46331 * 120.00408 * 14 12 11 37 37 H 1.08999 * 109.47111 * 239.99790 * 14 12 11 38 38 H 1.08005 * 119.87711 * 0.02562 * 16 15 14 39 39 H 1.08010 * 119.74823 * 179.97438 * 17 16 15 40 40 H 1.08001 * 119.87899 * 179.97438 * 18 17 16 41 41 H 1.08010 * 120.12409 * 179.97438 * 19 18 17 42 42 H 0.97001 * 119.99332 * 179.97438 * 24 23 21 43 43 H 1.07991 * 119.97658 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1972 0.0000 4 6 3.5822 1.1968 0.0005 5 9 4.2586 2.3663 0.0011 6 6 4.2733 -0.0032 0.0005 7 6 3.5805 -1.1988 0.0005 8 16 4.4594 -2.7260 0.0012 9 8 5.7430 -2.4504 -0.5427 10 8 3.5767 -3.6972 -0.5434 11 7 4.7033 -3.1505 1.5832 12 6 5.3304 -4.2413 1.8692 13 8 5.7879 -5.0358 0.8793 14 6 5.5528 -4.6274 3.3089 15 6 4.9501 -3.5796 4.2087 16 6 5.7326 -2.5616 4.7044 17 6 5.1809 -1.5968 5.5327 18 6 3.8372 -1.6445 5.8712 19 6 3.0361 -2.6532 5.3873 20 6 3.5840 -3.6349 4.5409 21 6 2.7689 -4.6725 4.0325 22 1 3.0301 -5.1587 3.1042 23 6 1.6238 -5.0694 4.7324 24 7 1.4707 -4.7251 5.9852 25 14 0.3140 -6.0908 3.8776 26 1 0.9094 -7.3682 3.4099 27 1 -0.7894 -6.3774 4.8292 28 1 -0.2195 -5.3381 2.7140 29 6 2.1978 -1.1973 -0.0058 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5139 33 1 1.6579 2.1324 0.0004 34 1 5.3533 -0.0048 0.0014 35 1 6.2445 -5.8292 1.1911 36 1 5.0794 -5.5896 3.5042 37 1 6.6226 -4.7025 3.5038 38 1 6.7805 -2.5143 4.4469 39 1 5.8026 -0.8017 5.9174 40 1 3.4180 -0.8878 6.5177 41 1 1.9896 -2.6888 5.6526 42 1 0.6768 -4.9999 6.4700 43 1 1.6572 -2.1321 -0.0107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097138841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:28 Heat of formation + Delta-G solvation = -101.058940 kcal Electronic energy + Delta-G solvation = -32612.147627 eV Core-core repulsion = 28050.032417 eV Total energy + Delta-G solvation = -4562.115210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.95659 -39.55984 -39.19301 -37.59471 -36.79764 -35.47873 -34.12662 -33.67484 -32.99447 -31.54557 -30.86425 -29.51777 -27.25305 -27.13817 -25.10522 -23.59627 -22.13329 -21.82544 -20.99836 -19.86806 -19.49801 -18.21343 -17.39943 -17.28909 -16.76542 -16.54748 -16.31179 -15.69193 -15.64685 -15.63103 -15.24875 -14.63360 -14.49818 -13.81748 -13.68704 -13.61107 -13.57359 -13.45381 -13.38852 -12.65031 -12.59488 -12.34370 -12.18910 -12.06273 -11.85953 -11.82878 -11.74459 -11.68206 -11.58201 -11.54041 -11.18228 -11.03202 -10.72489 -10.62288 -10.44774 -10.26368 -9.66025 -9.55314 -9.45130 -9.33688 -9.20538 -8.75457 -7.38201 -7.35605 -6.79608 -4.41916 0.50511 0.82247 1.05391 1.80376 2.74133 2.91082 3.03576 3.08165 3.14140 3.24485 3.47086 3.65252 3.89542 3.99713 4.07783 4.43550 4.58608 4.71629 4.85448 4.95173 5.03494 5.14871 5.24275 5.45424 5.48077 5.54425 5.71958 5.75305 5.83535 5.88607 5.97034 6.00569 6.15622 6.20415 6.23585 6.45126 6.69518 6.71499 7.02066 7.07206 7.23387 7.24395 7.35859 7.58300 7.85524 7.98825 8.08402 8.24245 8.58716 8.84697 8.95065 10.13891 Molecular weight = 377.09amu Principal moments of inertia in cm(-1) A = 0.007653 B = 0.004127 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.771028 B = 6782.774231 C = 7126.387377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C -0.104 4.104 4 C 0.081 3.919 5 F -0.136 7.136 6 C -0.057 4.057 7 C -0.605 4.605 8 S 2.630 3.370 9 O -0.978 6.978 10 O -0.971 6.971 11 N -0.900 5.900 12 C 0.497 3.503 13 O -0.523 6.523 14 C -0.046 4.046 15 C -0.181 4.181 16 C -0.075 4.075 17 C -0.238 4.238 18 C -0.104 4.104 19 C -0.158 4.158 20 C 0.137 3.863 21 C -0.460 4.460 22 H 0.074 0.926 23 C 0.079 3.921 24 N -0.792 5.792 25 Si 0.897 3.103 26 H -0.265 1.265 27 H -0.278 1.278 28 H -0.262 1.262 29 C -0.023 4.023 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.142 0.858 34 H 0.151 0.849 35 H 0.424 0.576 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.281 0.719 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 3.062 -7.368 8.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.123 4.123 4 C 0.061 3.939 5 F -0.115 7.115 6 C -0.077 4.077 7 C -0.692 4.692 8 S 2.723 3.277 9 O -0.967 6.967 10 O -0.960 6.960 11 N -0.759 5.759 12 C 0.277 3.723 13 O -0.320 6.320 14 C -0.086 4.086 15 C -0.182 4.182 16 C -0.093 4.093 17 C -0.258 4.258 18 C -0.123 4.123 19 C -0.177 4.177 20 C 0.135 3.865 21 C -0.489 4.489 22 H 0.092 0.908 23 C -0.139 4.139 24 N -0.418 5.418 25 Si 0.722 3.278 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.043 4.043 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.282 0.718 36 H 0.135 0.865 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.092 0.908 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.096 3.613 -8.066 8.906 hybrid contribution -0.457 -0.230 -0.264 0.576 sum 0.639 3.383 -8.331 9.014 Atomic orbital electron populations 1.20851 0.89628 1.03924 1.02854 1.19868 0.96955 0.91924 0.99121 1.21259 0.92237 0.99530 0.99259 1.17585 0.90213 0.81289 1.04782 1.91511 1.80219 1.45655 1.94113 1.20820 1.01155 0.90031 0.95653 1.30306 1.05851 1.18427 1.14646 1.03849 0.74313 0.74392 0.75125 1.93549 1.39092 1.85450 1.78655 1.93568 1.67317 1.56577 1.78513 1.74381 1.34890 1.23893 1.42728 1.24406 0.75811 0.81173 0.90915 1.84924 1.70526 1.38406 1.38107 1.20177 1.01702 1.01792 0.84909 1.18787 0.94182 0.99010 1.06270 1.20263 0.96902 0.94634 0.97516 1.20292 0.95604 1.02088 1.07779 1.20679 0.94131 0.97921 0.99572 1.21282 0.99504 0.94619 1.02309 1.17241 0.89546 0.90707 0.89037 1.19440 1.06313 1.16320 1.06874 0.90802 1.25848 0.98372 0.95503 0.94132 1.69806 1.26697 1.37221 1.08047 0.86533 0.80340 0.80660 0.80289 1.18941 1.20350 1.18694 1.20946 0.91856 0.99350 0.92100 0.90580 0.90350 0.90919 0.84057 0.83167 0.71829 0.86533 0.88416 0.89669 0.89753 0.89754 0.86597 0.90847 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.01 36.01 0.36 -0.82 16 2 C -0.08 -1.05 5.88 -104.63 -0.62 -1.67 16 3 C -0.10 -1.36 9.68 -39.52 -0.38 -1.74 16 4 C 0.08 1.21 7.30 -39.42 -0.29 0.93 16 5 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 6 C -0.06 -0.93 9.50 -39.51 -0.38 -1.31 16 7 C -0.61 -10.64 5.97 -39.59 -0.24 -10.88 16 8 S 2.63 50.80 4.78 -107.50 -0.51 50.29 16 9 O -0.98 -19.99 17.14 -58.37 -1.00 -21.00 16 10 O -0.97 -20.45 17.13 -58.39 -1.00 -21.45 16 11 N -0.90 -17.53 9.71 32.47 0.32 -17.21 16 12 C 0.50 8.24 7.52 -13.45 -0.10 8.14 16 13 O -0.52 -7.02 12.34 -17.20 -0.21 -7.23 16 14 C -0.05 -0.71 5.03 -29.04 -0.15 -0.85 16 15 C -0.18 -3.74 4.33 -103.92 -0.45 -4.19 16 16 C -0.07 -1.53 9.66 -39.66 -0.38 -1.91 16 17 C -0.24 -5.09 10.05 -39.29 -0.39 -5.48 16 18 C -0.10 -2.36 10.02 -39.66 -0.40 -2.76 16 19 C -0.16 -3.87 8.69 -38.88 -0.34 -4.21 16 20 C 0.14 3.26 5.56 -106.82 -0.59 2.67 16 21 C -0.46 -10.91 8.14 -37.74 -0.31 -11.22 16 22 H 0.07 1.68 6.67 -52.49 -0.35 1.33 16 23 C 0.08 1.85 5.16 -17.34 -0.09 1.76 16 24 N -0.79 -19.13 10.96 55.55 0.61 -18.53 16 25 Si 0.90 17.89 29.59 -169.99 -5.03 12.86 16 26 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 27 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 28 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 29 C -0.02 -0.37 9.18 -39.57 -0.36 -0.74 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 32 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 33 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.15 2.33 7.62 -52.49 -0.40 1.93 16 35 H 0.42 2.53 8.82 45.56 0.40 2.93 16 36 H 0.12 1.68 7.08 -51.93 -0.37 1.31 16 37 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 38 H 0.09 1.50 8.06 -52.48 -0.42 1.08 16 39 H 0.08 1.62 8.06 -52.48 -0.42 1.20 16 40 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.12 2.97 6.21 -52.48 -0.33 2.64 16 42 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 43 H 0.15 2.31 7.61 -52.49 -0.40 1.91 16 LS Contribution 388.81 15.07 5.86 5.86 Total: -1.00 -33.30 388.81 -9.98 -43.28 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -3.95 Total: 9.33 kcal Atomic # 6 Polarization: -29.17 SS G_CDS: -5.10 Total: -34.27 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.92 Total: -35.74 kcal Atomic # 8 Polarization: -47.46 SS G_CDS: -2.21 Total: -49.68 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 16 Polarization: 50.80 SS G_CDS: -0.51 Total: 50.29 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.30 -9.98 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097138841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.780 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds