Wall clock time and date at job start Tue Mar 31 2020 05:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86801 * 119.99900 * 2 1 4 4 H 1.48503 * 109.47159 * 239.99993 * 3 2 1 5 5 H 1.48492 * 109.47414 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47036 * 120.00364 * 3 2 1 7 7 C 1.38798 * 120.00046 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99957 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99973 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.46930 * 179.97438 * 10 9 7 12 12 O 1.21289 * 120.00164 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99861 * 180.02562 * 11 10 9 14 14 C 1.39445 * 119.99994 * 185.02195 * 13 11 10 15 15 C 1.36252 * 126.26992 * 26.29680 * 14 13 11 16 16 C 1.39751 * 107.90927 * 180.02562 * 15 14 13 17 17 N 1.31139 * 108.36331 * 359.97438 * 16 15 14 18 18 N 1.36027 * 126.26361 * 206.30750 * 14 13 11 19 19 C 1.40186 * 126.10607 * 0.02562 * 18 14 13 20 20 C 1.38840 * 120.05491 * 318.31987 * 19 18 14 21 21 C 1.38119 * 119.94325 * 179.72089 * 20 19 18 22 22 C 1.38380 * 120.05349 * 0.57416 * 21 20 19 23 23 Cl 1.73605 * 119.94456 * 179.69860 * 22 21 20 24 24 C 1.38391 * 120.11130 * 359.68219 * 22 21 20 25 25 C 1.38106 * 120.05249 * 0.04006 * 24 22 21 26 26 C 1.51367 * 109.49484 * 179.97438 * 16 15 14 27 27 C 1.54333 * 105.22075 * 17.24079 * 26 16 15 28 28 C 1.51285 * 142.49499 * 0.02562 * 15 14 13 29 29 H 0.96999 * 119.99843 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46984 * 60.00058 * 10 9 7 31 31 H 1.08996 * 109.47312 * 300.00299 * 10 9 7 32 32 H 0.97005 * 119.99746 * 5.01935 * 13 11 10 33 33 H 1.07998 * 120.03048 * 359.97438 * 20 19 18 34 34 H 1.07998 * 119.96954 * 180.26960 * 21 20 19 35 35 H 1.07994 * 119.97480 * 180.02562 * 24 22 21 36 36 H 1.07999 * 120.02656 * 180.02562 * 25 24 22 37 37 H 1.09002 * 110.29429 * 258.30490 * 26 16 15 38 38 H 1.09001 * 110.29657 * 136.17701 * 26 16 15 39 39 H 1.09010 * 110.76985 * 215.16502 * 27 26 16 40 40 H 1.08998 * 110.77422 * 91.75278 * 27 26 16 41 41 H 1.09001 * 110.29743 * 43.83537 * 28 15 14 42 42 H 1.09002 * 110.37249 * 281.74616 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2854 2.7465 0.0006 6 1 3.1042 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5159 -3.8915 -0.0029 11 6 1.9874 -5.3027 -0.0036 12 8 0.7910 -5.5022 -0.0038 13 7 2.8441 -6.3431 -0.0039 14 6 2.3587 -7.6460 -0.1102 15 6 1.1902 -8.0253 -0.6995 16 6 1.0840 -9.4143 -0.5885 17 7 2.1440 -9.8607 0.0415 18 7 2.9650 -8.7711 0.3557 19 6 4.1922 -8.8290 1.0307 20 6 5.2589 -8.0503 0.6024 21 6 6.4653 -8.1048 1.2726 22 6 6.6149 -8.9436 2.3630 23 17 8.1350 -9.0157 3.1987 24 6 5.5549 -9.7247 2.7888 25 6 4.3448 -9.6695 2.1254 26 6 -0.2056 -9.8754 -1.2330 27 6 -0.6557 -8.6994 -2.1254 28 6 -0.0207 -7.4801 -1.4241 29 1 -0.4850 0.8400 0.0004 30 1 3.1245 -3.7322 0.8872 31 1 3.1245 -3.7306 -0.8927 32 1 3.7985 -6.1856 0.0698 33 1 5.1442 -7.3994 -0.2518 34 1 7.2939 -7.4960 0.9424 35 1 5.6740 -10.3782 3.6402 36 1 3.5177 -10.2790 2.4582 37 1 -0.9571 -10.0805 -0.4706 38 1 -0.0288 -10.7639 -1.8393 39 1 -1.7426 -8.6165 -2.1366 40 1 -0.2650 -8.8101 -3.1370 41 1 0.2826 -6.7356 -2.1602 42 1 -0.7236 -7.0444 -0.7140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195580439.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:02 Heat of formation + Delta-G solvation = 60.338356 kcal Electronic energy + Delta-G solvation = -28487.320374 eV Core-core repulsion = 24392.833002 eV Total energy + Delta-G solvation = -4094.487371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 377.071 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.15700 -40.71517 -40.41665 -37.89879 -37.21666 -35.94845 -34.58218 -33.45065 -32.41168 -31.86768 -30.04651 -29.19514 -27.81371 -27.58536 -24.75011 -24.27579 -22.94876 -22.36359 -21.13740 -20.46324 -19.81809 -19.26578 -18.14518 -18.04814 -17.45902 -16.88799 -16.85439 -16.58307 -16.32821 -16.06685 -15.61040 -15.40784 -15.11250 -14.71928 -14.66598 -14.54454 -14.44065 -13.90253 -13.79809 -13.60881 -13.51839 -13.17956 -12.95813 -12.87081 -12.71463 -12.65719 -12.63098 -12.16563 -12.00087 -11.96047 -11.78629 -11.74235 -11.45933 -11.13581 -11.12546 -10.60415 -10.34949 -10.31264 -9.45563 -9.09508 -8.66838 -8.34887 -6.12660 -0.46651 0.00492 0.54166 0.71396 1.01341 1.27508 1.35136 1.44471 1.46275 1.55209 1.72480 1.97399 2.25992 2.29213 2.90787 2.99973 3.20492 3.52846 3.59837 3.64328 3.83909 3.92642 4.02579 4.18305 4.20619 4.23574 4.29258 4.29715 4.41037 4.46883 4.57519 4.71219 4.80033 4.86809 4.95103 4.97747 5.01830 5.06308 5.17038 5.25803 5.35883 5.42583 5.43228 5.55201 5.88259 6.04373 6.19715 6.52608 6.89231 7.07127 8.73743 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.006972 B = 0.002730 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4015.140424 B =10252.585631 C =13962.561071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.016 3.984 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.085 0.915 9 S -0.132 6.132 10 C -0.127 4.127 11 C 0.539 3.461 12 O -0.507 6.507 13 N -0.640 5.640 14 C 0.313 3.687 15 C -0.263 4.263 16 C 0.070 3.930 17 N -0.285 5.285 18 N -0.344 5.344 19 C 0.140 3.860 20 C -0.130 4.130 21 C -0.076 4.076 22 C -0.043 4.043 23 Cl -0.055 7.055 24 C -0.081 4.081 25 C -0.104 4.104 26 C -0.026 4.026 27 C -0.109 4.109 28 C -0.024 4.024 29 H 0.271 0.729 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.423 0.577 33 H 0.145 0.855 34 H 0.170 0.830 35 H 0.164 0.836 36 H 0.140 0.860 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.812 -22.069 0.807 25.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.189 4.189 3 Si 0.817 3.183 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.103 0.897 9 S 0.095 5.905 10 C -0.278 4.278 11 C 0.325 3.675 12 O -0.379 6.379 13 N -0.293 5.293 14 C 0.097 3.903 15 C -0.276 4.276 16 C -0.097 4.097 17 N -0.105 5.105 18 N -0.125 5.125 19 C 0.049 3.951 20 C -0.151 4.151 21 C -0.095 4.095 22 C -0.071 4.071 23 Cl -0.026 7.026 24 C -0.100 4.100 25 C -0.124 4.124 26 C -0.065 4.065 27 C -0.147 4.147 28 C -0.063 4.063 29 H 0.080 0.920 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.263 0.737 33 H 0.163 0.837 34 H 0.187 0.813 35 H 0.182 0.818 36 H 0.158 0.842 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.102 0.898 41 H 0.065 0.935 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.470 -23.248 1.363 25.959 hybrid contribution 1.863 2.175 0.048 2.864 sum 13.333 -21.073 1.412 24.976 Atomic orbital electron populations 1.70159 1.07897 1.28707 1.47858 1.26070 0.95912 1.03175 0.93731 0.85049 0.77851 0.75909 0.79500 1.18616 1.20583 1.18739 1.23182 0.95485 0.91944 1.59033 0.89691 1.85575 1.09153 0.98657 1.97074 1.23331 1.04442 0.92420 1.07571 1.20368 0.86235 0.85934 0.74936 1.90761 1.16258 1.85080 1.45754 1.42956 1.11633 1.01118 1.73624 1.17297 0.94122 0.80695 0.98166 1.20643 0.99182 0.95944 1.11839 1.23916 0.95939 0.94180 0.95712 1.77222 1.04048 1.06027 1.23182 1.46004 1.17214 1.02692 1.46603 1.17860 0.82518 1.01110 0.93609 1.21099 0.91233 1.01511 1.01251 1.21157 0.97537 0.97601 0.93228 1.21127 0.88754 1.00449 0.96734 1.98399 1.29369 1.97604 1.77218 1.21183 0.90086 0.98461 1.00312 1.21043 0.98934 0.99222 0.93248 1.20762 0.87665 0.99671 0.98393 1.22427 1.01989 0.91601 0.98641 1.20297 0.91694 0.97381 0.96897 0.91973 0.86601 0.86279 0.73703 0.83692 0.81251 0.81797 0.84234 0.87783 0.87598 0.87889 0.89790 0.93515 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.26 13.22 21.65 0.29 -53.97 16 2 C 0.02 0.89 5.49 84.86 0.47 1.36 16 3 Si 1.00 42.19 29.55 68.60 2.03 44.22 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.55 -29.93 9.50 67.95 0.65 -29.28 16 8 H 0.09 4.26 7.80 -2.91 -0.02 4.24 16 9 S -0.13 -6.88 20.57 -56.49 -1.16 -8.05 16 10 C -0.13 -4.64 6.16 71.23 0.44 -4.20 16 11 C 0.54 19.12 7.75 87.65 0.68 19.80 16 12 O -0.51 -21.70 12.06 -3.06 -0.04 -21.74 16 13 N -0.64 -17.87 5.31 -307.93 -1.63 -19.51 16 14 C 0.31 9.50 7.19 131.12 0.94 10.44 16 15 C -0.26 -8.22 5.85 -19.78 -0.12 -8.34 16 16 C 0.07 1.93 8.09 43.24 0.35 2.28 16 17 N -0.28 -8.27 12.40 -46.78 -0.58 -8.85 16 18 N -0.34 -9.51 3.72 -184.61 -0.69 -10.20 16 19 C 0.14 3.11 6.30 38.09 0.24 3.35 16 20 C -0.13 -2.21 8.66 22.39 0.19 -2.01 16 21 C -0.08 -1.03 9.82 22.28 0.22 -0.81 16 22 C -0.04 -0.63 6.32 22.34 0.14 -0.48 16 23 Cl -0.05 -0.73 28.95 -2.72 -0.08 -0.81 16 24 C -0.08 -1.20 9.82 22.27 0.22 -0.98 16 25 C -0.10 -2.00 9.84 22.38 0.22 -1.78 16 26 C -0.03 -0.48 6.77 30.51 0.21 -0.28 16 27 C -0.11 -2.10 7.06 31.50 0.22 -1.88 16 28 C -0.02 -0.72 4.92 30.48 0.15 -0.57 16 29 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.12 3.77 8.14 -2.39 -0.02 3.75 16 31 H 0.12 3.83 8.14 -2.40 -0.02 3.81 16 32 H 0.42 8.71 6.15 -92.70 -0.57 8.14 16 33 H 0.15 2.10 6.50 -2.91 -0.02 2.08 16 34 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 36 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 41 H 0.05 1.52 8.06 -2.39 -0.02 1.50 16 42 H 0.06 2.12 7.30 -2.39 -0.02 2.11 16 Total: -1.00 -75.06 383.80 3.87 -71.19 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.51 Total: 21.09 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: 5.22 Total: -13.38 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -2.62 Total: -92.53 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.04 Total: -21.74 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -6.88 SS G_CDS: -1.16 Total: -8.05 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -75.06 3.87 -71.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195580439.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.531 kcal (2) G-P(sol) polarization free energy of solvation -75.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds