Wall clock time and date at job start Tue Mar 31 2020 05:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29588 * 117.70183 * 2 1 4 4 Br 1.89098 * 118.18265 * 0.88071 * 3 2 1 5 5 C 1.50320 * 123.63399 * 180.84936 * 3 2 1 6 6 N 1.47009 * 109.16698 * 349.04807 * 5 3 2 7 7 C 1.34772 * 121.37173 * 222.96821 * 6 5 3 8 8 O 1.21279 * 120.00037 * 179.97438 * 7 6 5 9 9 C 1.50702 * 120.00138 * 0.02562 * 7 6 5 10 10 C 1.53001 * 109.47330 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.47026 * 304.99832 * 10 9 7 12 12 C 1.50701 * 109.46871 * 64.99762 * 10 9 7 13 13 H 1.08004 * 119.99897 * 234.65320 * 12 10 9 14 14 C 1.37879 * 120.00198 * 54.65700 * 12 10 9 15 15 N 1.31510 * 119.99728 * 4.46426 * 14 12 10 16 16 Si 1.86800 * 119.99883 * 184.47150 * 14 12 10 17 17 H 1.48499 * 109.47243 * 59.99749 * 16 14 12 18 18 H 1.48507 * 109.46981 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47030 * 299.99607 * 16 14 12 20 20 C 1.50693 * 109.47267 * 184.99643 * 10 9 7 21 21 C 1.38237 * 119.99888 * 331.77784 * 20 10 9 22 22 C 1.38238 * 120.00054 * 179.97438 * 21 20 10 23 23 C 1.38239 * 119.99757 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99996 * 359.97438 * 23 22 21 25 25 C 1.38230 * 120.00012 * 0.07432 * 24 23 22 26 26 C 1.47341 * 117.25644 * 43.23557 * 6 5 3 27 27 C 1.49967 * 117.70371 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47255 * 57.74902 * 1 2 3 29 29 H 1.08999 * 109.46988 * 177.74862 * 1 2 3 30 30 H 1.08998 * 109.47444 * 297.74816 * 1 2 3 31 31 H 1.08994 * 109.52755 * 229.13819 * 5 3 2 32 32 H 1.08999 * 109.57065 * 108.97956 * 5 3 2 33 33 H 1.09000 * 109.47327 * 59.99283 * 9 7 6 34 34 H 1.09003 * 109.46852 * 299.99561 * 9 7 6 35 35 H 0.97001 * 120.00006 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.00134 * 359.97200 * 21 20 10 37 37 H 1.08001 * 120.00098 * 179.97438 * 22 21 20 38 38 H 1.08004 * 119.99724 * 179.72550 * 23 22 21 39 39 H 1.07994 * 119.99623 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.99801 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.77347 * 57.49983 * 26 6 5 42 42 H 1.08991 * 109.77723 * 178.30698 * 26 6 5 43 43 H 1.09007 * 109.31535 * 281.26712 * 27 2 1 44 44 H 1.09000 * 109.31467 * 40.88554 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1094 1.1473 0.0000 4 35 1.0490 2.7128 0.0256 5 6 3.6044 1.3028 -0.0186 6 7 4.2288 -0.0051 0.2281 7 6 5.2837 -0.1339 1.0568 8 8 5.7792 -1.2251 1.2427 9 6 5.8469 1.0779 1.7536 10 6 7.0297 0.6591 2.6291 11 1 6.7142 -0.1283 3.3136 12 6 8.1454 0.1474 1.7548 13 1 8.5615 -0.8339 1.9294 14 6 8.6351 0.9319 0.7321 15 7 8.1902 2.1593 0.5742 16 14 9.9301 0.2510 -0.4293 17 1 9.3927 -0.9475 -1.1222 18 1 10.2865 1.2849 -1.4341 19 1 11.1401 -0.1257 0.3447 20 6 7.5152 1.8469 3.4192 21 6 7.3502 3.1246 2.9181 22 6 7.7950 4.2143 3.6431 23 6 8.4045 4.0262 4.8696 24 6 8.5686 2.7485 5.3712 25 6 8.1246 1.6589 4.6457 26 6 3.6575 -1.1685 -0.4728 27 6 2.2042 -1.3278 -0.0006 28 1 -0.3633 0.5484 -0.8691 29 1 -0.3633 -1.0269 -0.0404 30 1 -0.3634 0.4784 0.9094 31 1 3.9076 2.0035 0.7593 32 1 3.9203 1.6794 -0.9914 33 1 5.0756 1.5297 2.3773 34 1 6.1828 1.8010 1.0102 35 1 8.5349 2.7114 -0.1450 36 1 6.8737 3.2716 1.9601 37 1 7.6665 5.2125 3.2514 38 1 8.7561 4.8773 5.4340 39 1 9.0451 2.6017 6.3291 40 1 8.2532 0.6607 5.0374 41 1 3.6819 -0.9989 -1.5492 42 1 4.2280 -2.0639 -0.2267 43 1 2.1939 -1.7409 1.0081 44 1 1.6833 -2.0082 -0.6742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253429958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:18 Heat of formation + Delta-G solvation = 11.410823 kcal Electronic energy + Delta-G solvation = -26704.652807 eV Core-core repulsion = 23054.403565 eV Total energy + Delta-G solvation = -3650.249242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 377.073 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.77656 -38.31770 -37.35190 -34.33486 -33.91863 -32.13424 -31.05405 -29.86040 -29.59846 -28.62391 -28.01794 -25.89729 -24.04881 -23.49968 -22.28364 -21.35992 -19.97920 -19.02708 -17.13474 -16.56344 -16.22347 -15.65485 -15.48733 -15.23595 -14.80059 -14.58861 -14.04200 -13.92839 -13.77328 -13.67114 -13.12322 -13.03485 -12.71174 -12.56566 -12.21131 -12.10127 -11.94367 -11.81366 -11.53153 -11.39910 -11.28946 -10.90646 -10.82812 -10.80321 -10.73822 -10.43960 -10.15701 -10.10279 -9.93233 -9.30821 -9.19472 -8.85644 -8.74536 -8.42732 -8.22651 -7.79426 -7.43142 -5.97580 -4.07328 1.61195 1.70692 2.50812 2.59312 3.33013 3.35729 3.42128 3.47748 3.59512 4.43512 4.49982 4.73417 4.98387 5.04501 5.16352 5.24024 5.28249 5.37623 5.49718 5.50670 5.62164 5.67542 5.72316 5.82474 5.91366 5.94510 6.01735 6.07250 6.15773 6.35323 6.43903 6.46603 6.58107 6.69761 6.78396 6.86120 7.14428 7.16255 7.27156 7.46227 7.54782 7.69146 7.93369 7.99034 8.12970 8.18705 8.34655 8.88763 9.08999 9.55883 10.96688 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.003480 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.676850 B = 8043.723394 C = 9401.957712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.072 4.072 3 C -0.144 4.144 4 Br -0.067 7.067 5 C 0.163 3.837 6 N -0.628 5.628 7 C 0.533 3.467 8 O -0.521 6.521 9 C -0.138 4.138 10 C 0.088 3.912 11 H 0.037 0.963 12 C -0.471 4.471 13 H 0.058 0.942 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.027 4.027 21 C -0.069 4.069 22 C -0.142 4.142 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.132 4.132 26 C 0.109 3.891 27 C -0.093 4.093 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.134 0.866 35 H 0.261 0.739 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.550 1.500 -2.149 16.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 C -0.224 4.224 4 Br 0.018 6.982 5 C 0.039 3.961 6 N -0.366 5.366 7 C 0.324 3.676 8 O -0.395 6.395 9 C -0.177 4.177 10 C 0.069 3.931 11 H 0.055 0.945 12 C -0.508 4.508 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.719 3.281 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.027 4.027 21 C -0.087 4.087 22 C -0.161 4.161 23 C -0.172 4.172 24 C -0.160 4.160 25 C -0.150 4.150 26 C -0.014 4.014 27 C -0.132 4.132 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.152 0.848 35 H 0.072 0.928 36 H 0.157 0.843 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.104 0.896 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.568 1.625 -2.143 16.785 hybrid contribution 1.088 -0.457 -0.836 1.446 sum -15.480 1.168 -2.979 15.807 Atomic orbital electron populations 1.21210 0.91566 1.02881 1.03199 1.20962 0.96394 0.94204 0.95936 1.23372 0.96540 0.91321 1.11177 1.96650 1.68649 1.35399 1.97545 1.20358 0.85916 0.86715 1.03133 1.48380 1.33239 1.07134 1.47854 1.21168 0.76998 0.92038 0.77358 1.90609 1.57825 1.28689 1.62356 1.21989 0.97530 0.96333 1.01898 1.17634 0.92440 0.90576 0.92453 0.94496 1.20936 1.17091 1.00948 1.11852 0.92338 1.24872 0.96794 0.94632 0.97583 1.69648 1.44007 1.07180 1.32114 0.86658 0.82065 0.78643 0.80758 1.20401 1.21393 1.20370 1.20324 0.94834 0.95813 0.91761 1.21353 0.98094 0.91207 0.98078 1.21048 1.01289 0.98422 0.95318 1.20768 1.03053 0.96181 0.97218 1.20795 1.02449 0.93174 0.99549 1.20891 1.00716 0.97602 0.95773 1.21644 0.92298 0.91428 0.96061 1.20953 0.95852 0.93368 1.03072 0.90578 0.91639 0.90605 0.87892 0.90220 0.92925 0.84832 0.92846 0.84324 0.88070 0.88305 0.88109 0.87683 0.91669 0.88346 0.89565 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 8.61 36.01 0.31 -0.86 16 2 C -0.07 -0.81 5.86 -101.03 -0.59 -1.40 16 3 C -0.14 -1.79 6.25 -35.82 -0.22 -2.01 16 4 Br -0.07 -0.75 31.39 -68.01 -2.13 -2.88 16 5 C 0.16 2.35 6.24 -5.10 -0.03 2.31 16 6 N -0.63 -10.56 2.96 -173.80 -0.51 -11.08 16 7 C 0.53 11.22 7.47 -10.99 -0.08 11.14 16 8 O -0.52 -12.67 14.47 5.56 0.08 -12.59 16 9 C -0.14 -2.93 2.51 -27.88 -0.07 -3.00 16 10 C 0.09 2.10 1.97 -92.93 -0.18 1.92 16 11 H 0.04 0.90 7.91 -51.93 -0.41 0.49 16 12 C -0.47 -12.52 7.27 -34.44 -0.25 -12.77 16 13 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 14 C 0.06 1.59 5.13 -17.82 -0.09 1.50 16 15 N -0.89 -22.46 7.99 55.43 0.44 -22.01 16 16 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.03 -0.61 4.69 -104.63 -0.49 -1.10 16 21 C -0.07 -1.50 7.47 -39.58 -0.30 -1.80 16 22 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 23 C -0.15 -2.90 10.05 -39.58 -0.40 -3.29 16 24 C -0.14 -2.73 10.05 -39.58 -0.40 -3.12 16 25 C -0.13 -2.81 9.71 -39.59 -0.38 -3.20 16 26 C 0.11 1.53 6.54 -3.25 -0.02 1.51 16 27 C -0.09 -1.03 5.86 -27.91 -0.16 -1.19 16 28 H 0.08 0.65 7.63 -51.93 -0.40 0.25 16 29 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 30 H 0.08 0.68 7.80 -51.93 -0.40 0.28 16 31 H 0.10 1.52 6.25 -51.93 -0.32 1.19 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 1.01 7.57 -51.93 -0.39 0.62 16 34 H 0.13 3.00 4.68 -51.93 -0.24 2.76 16 35 H 0.26 6.48 8.31 -40.82 -0.34 6.15 16 36 H 0.14 3.08 5.18 -52.49 -0.27 2.81 16 37 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 39 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.11 2.13 8.06 -52.48 -0.42 1.71 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.10 1.53 7.07 -51.93 -0.37 1.16 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 LS Contribution 366.26 15.07 5.52 5.52 Total: -1.00 -28.47 366.26 -11.54 -40.01 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.15 Total: 5.28 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.76 Total: -18.58 kcal Atomic # 7 Polarization: -33.02 SS G_CDS: -0.07 Total: -33.09 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 35 Polarization: -0.75 SS G_CDS: -2.13 Total: -2.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.47 -11.54 -40.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253429958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.421 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds