Wall clock time and date at job start Tue Mar 31 2020 05:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.29588 * 117.70183 * 2 1 4 4 Br 1.89098 * 118.18265 * 0.88071 * 3 2 1 5 5 C 1.50320 * 123.63399 * 180.84936 * 3 2 1 6 6 N 1.47009 * 109.16698 * 349.04807 * 5 3 2 7 7 C 1.34772 * 121.37173 * 222.96821 * 6 5 3 8 8 O 1.21279 * 120.00037 * 179.97438 * 7 6 5 9 9 C 1.50702 * 120.00138 * 0.02562 * 7 6 5 10 10 C 1.53001 * 109.47330 * 179.97438 * 9 7 6 11 11 H 1.09003 * 109.47026 * 304.99832 * 10 9 7 12 12 C 1.50701 * 109.46871 * 64.99762 * 10 9 7 13 13 H 1.08004 * 119.99897 * 234.65320 * 12 10 9 14 14 C 1.37879 * 120.00198 * 54.65700 * 12 10 9 15 15 N 1.31510 * 119.99728 * 4.46426 * 14 12 10 16 16 Si 1.86800 * 119.99883 * 184.47150 * 14 12 10 17 17 H 1.48499 * 109.47243 * 59.99749 * 16 14 12 18 18 H 1.48507 * 109.46981 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47030 * 299.99607 * 16 14 12 20 20 C 1.50693 * 109.47267 * 184.99643 * 10 9 7 21 21 C 1.38237 * 119.99888 * 331.77784 * 20 10 9 22 22 C 1.38238 * 120.00054 * 179.97438 * 21 20 10 23 23 C 1.38239 * 119.99757 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99996 * 359.97438 * 23 22 21 25 25 C 1.38230 * 120.00012 * 0.07432 * 24 23 22 26 26 C 1.47341 * 117.25644 * 43.23557 * 6 5 3 27 27 C 1.49967 * 117.70371 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.47255 * 57.74902 * 1 2 3 29 29 H 1.08999 * 109.46988 * 177.74862 * 1 2 3 30 30 H 1.08998 * 109.47444 * 297.74816 * 1 2 3 31 31 H 1.08994 * 109.52755 * 229.13819 * 5 3 2 32 32 H 1.08999 * 109.57065 * 108.97956 * 5 3 2 33 33 H 1.09000 * 109.47327 * 59.99283 * 9 7 6 34 34 H 1.09003 * 109.46852 * 299.99561 * 9 7 6 35 35 H 0.97001 * 120.00006 * 179.97438 * 15 14 12 36 36 H 1.07998 * 120.00134 * 359.97200 * 21 20 10 37 37 H 1.08001 * 120.00098 * 179.97438 * 22 21 20 38 38 H 1.08004 * 119.99724 * 179.72550 * 23 22 21 39 39 H 1.07994 * 119.99623 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.99801 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.77347 * 57.49983 * 26 6 5 42 42 H 1.08991 * 109.77723 * 178.30698 * 26 6 5 43 43 H 1.09007 * 109.31535 * 281.26712 * 27 2 1 44 44 H 1.09000 * 109.31467 * 40.88554 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1094 1.1473 0.0000 4 35 1.0490 2.7128 0.0256 5 6 3.6044 1.3028 -0.0186 6 7 4.2288 -0.0051 0.2281 7 6 5.2837 -0.1339 1.0568 8 8 5.7792 -1.2251 1.2427 9 6 5.8469 1.0779 1.7536 10 6 7.0297 0.6591 2.6291 11 1 6.7142 -0.1283 3.3136 12 6 8.1454 0.1474 1.7548 13 1 8.5615 -0.8339 1.9294 14 6 8.6351 0.9319 0.7321 15 7 8.1902 2.1593 0.5742 16 14 9.9301 0.2510 -0.4293 17 1 9.3927 -0.9475 -1.1222 18 1 10.2865 1.2849 -1.4341 19 1 11.1401 -0.1257 0.3447 20 6 7.5152 1.8469 3.4192 21 6 7.3502 3.1246 2.9181 22 6 7.7950 4.2143 3.6431 23 6 8.4045 4.0262 4.8696 24 6 8.5686 2.7485 5.3712 25 6 8.1246 1.6589 4.6457 26 6 3.6575 -1.1685 -0.4728 27 6 2.2042 -1.3278 -0.0006 28 1 -0.3633 0.5484 -0.8691 29 1 -0.3633 -1.0269 -0.0404 30 1 -0.3634 0.4784 0.9094 31 1 3.9076 2.0035 0.7593 32 1 3.9203 1.6794 -0.9914 33 1 5.0756 1.5297 2.3773 34 1 6.1828 1.8010 1.0102 35 1 8.5349 2.7114 -0.1450 36 1 6.8737 3.2716 1.9601 37 1 7.6665 5.2125 3.2514 38 1 8.7561 4.8773 5.4340 39 1 9.0451 2.6017 6.3291 40 1 8.2532 0.6607 5.0374 41 1 3.6819 -0.9989 -1.5492 42 1 4.2280 -2.0639 -0.2267 43 1 2.1939 -1.7409 1.0081 44 1 1.6833 -2.0082 -0.6742 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253429958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:17 Heat of formation + Delta-G solvation = -0.696827 kcal Electronic energy + Delta-G solvation = -26705.177834 eV Core-core repulsion = 23054.403565 eV Total energy + Delta-G solvation = -3650.774269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 377.073 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18331 -39.85830 -38.72894 -36.08165 -35.21033 -33.27316 -32.82106 -31.42046 -30.70951 -29.97356 -29.28112 -27.66761 -25.10871 -24.90265 -23.79653 -22.92639 -21.55056 -20.53739 -18.60352 -18.01094 -17.84316 -17.17131 -16.94867 -16.73593 -16.27161 -15.64900 -15.54297 -15.31411 -15.23559 -14.97122 -14.60276 -14.47553 -13.93054 -13.85195 -13.73822 -13.44703 -13.32083 -13.15688 -12.90782 -12.82583 -12.77087 -12.67878 -12.54395 -12.24059 -11.87662 -11.80020 -11.73597 -11.66598 -11.09082 -11.05466 -11.00091 -10.61266 -10.29547 -9.72994 -9.58867 -9.39584 -9.11296 -7.94221 -6.10127 0.66541 0.78799 0.89382 1.00509 1.37469 1.38516 1.46230 1.94062 2.16266 2.45154 3.20060 3.37999 3.52006 3.81209 3.90748 4.12324 4.19090 4.28913 4.33686 4.41954 4.44444 4.51473 4.65332 4.66816 4.69811 4.74926 4.78806 4.81098 4.88394 4.92684 5.02898 5.07888 5.14308 5.29381 5.33020 5.53997 5.54929 5.59950 5.64483 5.68514 5.89077 5.95045 6.09574 6.35152 6.41873 6.52674 6.58475 6.83817 7.47107 7.52441 8.95125 Molecular weight = 377.07amu Principal moments of inertia in cm(-1) A = 0.010103 B = 0.003480 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2770.676850 B = 8043.723394 C = 9401.957712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.062 4.062 3 C -0.164 4.164 4 Br -0.053 7.053 5 C 0.162 3.838 6 N -0.624 5.624 7 C 0.528 3.472 8 O -0.566 6.566 9 C -0.125 4.125 10 C 0.089 3.911 11 H 0.013 0.987 12 C -0.492 4.492 13 H 0.028 0.972 14 C 0.036 3.964 15 N -0.885 5.885 16 Si 0.928 3.072 17 H -0.289 1.289 18 H -0.275 1.275 19 H -0.282 1.282 20 C -0.050 4.050 21 C -0.081 4.081 22 C -0.146 4.146 23 C -0.148 4.148 24 C -0.139 4.139 25 C -0.152 4.152 26 C 0.102 3.898 27 C -0.087 4.087 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.125 0.875 35 H 0.262 0.738 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.896 3.107 -2.250 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.065 4.065 3 C -0.244 4.244 4 Br 0.032 6.968 5 C 0.038 3.962 6 N -0.360 5.360 7 C 0.319 3.681 8 O -0.444 6.444 9 C -0.164 4.164 10 C 0.070 3.930 11 H 0.032 0.968 12 C -0.529 4.529 13 H 0.046 0.954 14 C -0.164 4.164 15 N -0.524 5.524 16 Si 0.756 3.244 17 H -0.215 1.215 18 H -0.200 1.200 19 H -0.208 1.208 20 C -0.051 4.051 21 C -0.100 4.100 22 C -0.164 4.164 23 C -0.166 4.166 24 C -0.157 4.157 25 C -0.170 4.170 26 C -0.020 4.020 27 C -0.125 4.125 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.142 0.858 35 H 0.072 0.928 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.958 3.268 -2.266 18.393 hybrid contribution 1.466 -0.935 -0.770 1.902 sum -16.492 2.333 -3.036 16.930 Atomic orbital electron populations 1.21232 0.89396 1.04396 1.03498 1.21228 0.97903 0.93581 0.93815 1.23166 0.95337 0.92480 1.13393 1.96649 1.67826 1.34747 1.97611 1.20417 0.87593 0.85162 1.03014 1.48319 1.32051 1.09133 1.46485 1.21119 0.77825 0.91221 0.77974 1.90581 1.59659 1.29911 1.64209 1.21770 0.97040 0.96244 1.01391 1.17527 0.92578 0.90711 0.92208 0.96835 1.20900 1.18444 1.00035 1.13568 0.95373 1.25214 0.97934 0.95103 0.98123 1.69738 1.43810 1.06887 1.31924 0.86083 0.80505 0.78063 0.79712 1.21532 1.20035 1.20800 1.20289 0.96338 0.95764 0.92704 1.21305 0.98967 0.91514 0.98194 1.21364 1.00550 0.98894 0.95603 1.21200 1.01481 0.97133 0.96806 1.21152 1.01475 0.92715 1.00402 1.21072 1.01422 0.98584 0.95946 1.21867 0.93920 0.89539 0.96722 1.20943 0.93807 0.94221 1.03567 0.89830 0.89655 0.90518 0.88726 0.89863 0.91442 0.85752 0.92780 0.85300 0.85564 0.84601 0.85013 0.87950 0.90085 0.90326 0.90012 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 8.61 71.24 0.61 -1.27 16 2 C -0.06 -1.26 5.86 -15.27 -0.09 -1.35 16 3 C -0.16 -3.84 6.25 26.97 0.17 -3.67 16 4 Br -0.05 -1.09 31.39 -20.37 -0.64 -1.73 16 5 C 0.16 4.62 6.24 85.42 0.53 5.16 16 6 N -0.62 -21.35 2.96 -822.18 -2.43 -23.78 16 7 C 0.53 23.20 7.47 87.66 0.65 23.85 16 8 O -0.57 -29.19 14.47 -3.03 -0.04 -29.24 16 9 C -0.12 -5.52 2.51 29.85 0.07 -5.44 16 10 C 0.09 4.47 1.97 -12.29 -0.02 4.44 16 11 H 0.01 0.70 7.91 -2.39 -0.02 0.68 16 12 C -0.49 -27.48 7.27 25.60 0.19 -27.30 16 13 H 0.03 1.69 7.82 -2.91 -0.02 1.66 16 14 C 0.04 1.91 5.13 84.66 0.43 2.35 16 15 N -0.88 -45.10 7.99 21.45 0.17 -44.93 16 16 Si 0.93 44.52 29.54 68.60 2.03 46.54 16 17 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 20 C -0.05 -2.35 4.69 -19.87 -0.09 -2.44 16 21 C -0.08 -3.53 7.47 22.27 0.17 -3.37 16 22 C -0.15 -5.47 10.05 22.27 0.22 -5.24 16 23 C -0.15 -5.10 10.05 22.27 0.22 -4.88 16 24 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 25 C -0.15 -6.54 9.71 22.27 0.22 -6.33 16 26 C 0.10 2.83 6.54 86.43 0.57 3.40 16 27 C -0.09 -1.76 5.86 29.83 0.17 -1.58 16 28 H 0.08 1.15 7.63 -2.39 -0.02 1.13 16 29 H 0.08 0.93 7.90 -2.39 -0.02 0.92 16 30 H 0.08 1.16 7.80 -2.39 -0.02 1.15 16 31 H 0.09 2.82 6.25 -2.39 -0.01 2.81 16 32 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.07 2.70 7.57 -2.39 -0.02 2.68 16 34 H 0.13 5.77 4.68 -2.39 -0.01 5.76 16 35 H 0.26 12.96 8.31 -92.71 -0.77 12.19 16 36 H 0.13 5.78 5.18 -2.91 -0.02 5.76 16 37 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 38 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 40 H 0.10 4.31 8.06 -2.91 -0.02 4.29 16 41 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.08 2.52 7.07 -2.39 -0.02 2.51 16 43 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.12 1.66 8.11 -2.39 -0.02 1.64 16 Total: -1.00 -63.58 366.26 4.34 -59.25 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.01 Total: 22.43 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: 4.25 Total: -28.54 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -2.26 Total: -68.72 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.04 Total: -29.24 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 35 Polarization: -1.09 SS G_CDS: -0.64 Total: -1.73 kcal Total: -63.58 4.34 -59.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253429958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.550 kcal (2) G-P(sol) polarization free energy of solvation -63.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds