Wall clock time and date at job start Tue Mar 31 2020 05:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46980 * 2 1 4 4 H 1.09002 * 109.46917 * 54.99591 * 3 2 1 5 5 C 1.52992 * 109.47410 * 174.99957 * 3 2 1 6 6 N 1.46501 * 109.47092 * 295.00054 * 3 2 1 7 7 C 1.33796 * 120.23848 * 300.02186 * 6 3 2 8 8 O 1.21637 * 126.55520 * 0.02562 * 7 6 3 9 9 S 1.77222 * 106.89032 * 179.71199 * 7 6 3 10 10 C 1.77487 * 94.57345 * 0.34950 * 9 7 6 11 11 C 1.35787 * 127.96799 * 179.97438 * 10 9 7 12 12 C 1.46774 * 119.99503 * 171.69560 * 11 10 9 13 13 C 1.40124 * 120.08404 * 141.64498 * 12 11 10 14 14 C 1.37618 * 119.99302 * 179.97438 * 13 12 11 15 15 C 1.39078 * 120.17074 * 359.97438 * 14 13 12 16 16 O 1.35608 * 119.91550 * 179.97438 * 15 14 13 17 17 C 1.34761 * 116.99849 * 5.70193 * 16 15 14 18 18 H 1.07999 * 120.00356 * 354.90466 * 17 16 15 19 19 C 1.38690 * 119.99941 * 174.90031 * 17 16 15 20 20 N 1.31532 * 120.00026 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99894 * 0.02562 * 19 17 16 22 22 H 1.48495 * 109.47081 * 90.00121 * 21 19 17 23 23 H 1.48495 * 109.47081 * 210.00002 * 21 19 17 24 24 H 1.48502 * 109.47276 * 329.99944 * 21 19 17 25 25 C 1.39643 * 120.16898 * 359.97438 * 15 14 13 26 26 O 1.35953 * 119.99273 * 179.97438 * 25 15 14 27 27 C 1.42896 * 117.00034 * 180.02562 * 26 25 15 28 28 C 1.38048 * 120.00973 * 359.74792 * 25 15 14 29 29 C 1.32253 * 120.24408 * 119.99829 * 6 3 2 30 30 O 1.21712 * 122.52172 * 0.04090 * 29 6 3 31 31 H 1.09005 * 109.46760 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47250 * 299.99807 * 1 2 3 33 33 H 1.09000 * 109.47493 * 60.00346 * 1 2 3 34 34 H 1.08992 * 109.47732 * 240.00026 * 2 1 3 35 35 H 1.09000 * 109.47493 * 119.99654 * 2 1 3 36 36 H 1.09005 * 109.47084 * 300.00221 * 5 3 2 37 37 H 1.09002 * 109.47379 * 59.99917 * 5 3 2 38 38 H 1.08995 * 109.47653 * 180.02562 * 5 3 2 39 39 H 1.07995 * 119.99838 * 351.42827 * 11 10 9 40 40 H 1.08008 * 120.00382 * 359.97438 * 13 12 11 41 41 H 1.08004 * 119.91772 * 179.97438 * 14 13 12 42 42 H 0.96996 * 119.99506 * 179.97438 * 20 19 17 43 43 H 1.09005 * 109.46986 * 60.00482 * 27 26 25 44 44 H 1.09005 * 109.47196 * 180.02562 * 27 26 25 45 45 H 1.08999 * 109.47501 * 300.00392 * 27 26 25 46 46 H 1.08003 * 120.08548 * 180.25066 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4445 0.1257 6 7 1.6523 2.0975 -1.2518 7 6 2.0707 1.6095 -2.4252 8 8 2.7742 0.6316 -2.5938 9 16 1.3964 2.6549 -3.6875 10 6 0.5687 3.7359 -2.5488 11 6 -0.1891 4.8263 -2.8327 12 6 -0.9444 5.4929 -1.7653 13 6 -1.0463 6.8903 -1.7444 14 6 -1.7554 7.5134 -0.7430 15 6 -2.3726 6.7596 0.2496 16 8 -3.0696 7.3791 1.2342 17 6 -3.2247 8.7135 1.1275 18 1 -2.7337 9.2522 0.3306 19 6 -4.0150 9.3950 2.0411 20 7 -4.1660 10.6974 1.9373 21 14 -4.8638 8.4632 3.4198 22 1 -3.9713 8.4124 4.6055 23 1 -6.1271 9.1554 3.7805 24 1 -5.1678 7.0812 2.9694 25 6 -2.2764 5.3666 0.2349 26 8 -2.8807 4.6333 1.2072 27 6 -2.7407 3.2133 1.1304 28 6 -1.5717 4.7338 -0.7694 29 6 0.8860 3.1752 -1.2303 30 8 0.4750 3.6653 -0.1948 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 3.8531 0.9572 1.0571 37 1 3.9994 0.9055 -0.7161 38 1 3.9280 2.4721 0.1262 39 1 -0.2326 5.2054 -3.8429 40 1 -0.5684 7.4783 -2.5141 41 1 -1.8329 8.5906 -0.7278 42 1 -4.7190 11.1739 2.5760 43 1 -1.6842 2.9493 1.1785 44 1 -3.2695 2.7505 1.9637 45 1 -3.1619 2.8569 0.1904 46 1 -1.4999 3.6562 -0.7843 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409013475.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:34 Heat of formation + Delta-G solvation = -61.269992 kcal Electronic energy + Delta-G solvation = -32957.201424 eV Core-core repulsion = 28520.271897 eV Total energy + Delta-G solvation = -4436.929526 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98687 -39.93453 -38.95391 -37.86010 -36.86661 -36.27331 -34.67198 -33.15826 -32.50817 -30.56328 -29.72766 -28.86317 -26.96627 -25.86754 -25.30109 -24.76746 -23.67356 -21.88789 -21.73795 -20.64095 -19.86008 -18.79233 -18.10012 -17.91688 -16.95842 -16.89646 -16.45882 -15.98323 -15.56978 -15.43951 -15.18778 -14.82405 -14.67597 -14.49114 -14.31446 -14.11083 -13.87220 -13.83487 -13.74382 -13.55109 -13.31968 -12.87237 -12.48754 -12.39656 -12.28643 -12.13481 -11.92042 -11.68453 -11.51789 -11.47031 -11.40470 -11.27663 -11.09321 -10.92693 -10.85574 -10.48082 -10.33036 -10.25387 -10.01423 -9.90721 -9.66348 -9.06798 -8.45012 -7.90080 -7.11489 -6.64602 -4.22474 0.23958 0.63486 1.40748 1.48386 2.06877 2.22695 2.51149 2.84115 3.15154 3.18427 3.36140 3.83738 4.00980 4.11090 4.27282 4.35798 4.53549 4.59094 4.61498 4.90194 4.92155 4.92769 5.04267 5.20786 5.26898 5.32393 5.40446 5.42737 5.47723 5.50500 5.53709 5.62952 5.65249 5.66229 5.76004 5.79711 5.86706 5.95337 6.07274 6.09267 6.36446 6.54944 6.69428 6.74168 6.82663 7.01662 7.29075 7.45573 7.46830 7.74076 8.00015 8.68537 9.30814 10.40611 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.014893 B = 0.002659 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.612965 B =10526.738592 C =11608.935277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.139 4.139 3 C 0.124 3.876 4 H 0.114 0.886 5 C -0.168 4.168 6 N -0.563 5.563 7 C 0.540 3.460 8 O -0.444 6.444 9 S -0.050 6.050 10 C -0.281 4.281 11 C 0.122 3.878 12 C -0.180 4.180 13 C -0.045 4.045 14 C -0.219 4.219 15 C 0.166 3.834 16 O -0.183 6.183 17 C -0.385 4.385 18 H 0.113 0.887 19 C 0.068 3.932 20 N -0.862 5.862 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.252 1.252 25 C 0.044 3.956 26 O -0.308 6.308 27 C 0.032 3.968 28 C -0.082 4.082 29 C 0.550 3.450 30 O -0.454 6.454 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.061 0.939 39 H 0.144 0.856 40 H 0.119 0.881 41 H 0.145 0.855 42 H 0.284 0.716 43 H 0.052 0.948 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.651 -17.360 -7.325 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.020 3.980 4 H 0.132 0.868 5 C -0.226 4.226 6 N -0.309 5.309 7 C 0.221 3.779 8 O -0.319 6.319 9 S 0.187 5.813 10 C -0.396 4.396 11 C 0.096 3.904 12 C -0.184 4.184 13 C -0.064 4.064 14 C -0.238 4.238 15 C 0.110 3.890 16 O -0.085 6.085 17 C -0.460 4.460 18 H 0.130 0.870 19 C -0.139 4.139 20 N -0.497 5.497 21 Si 0.729 3.271 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.176 1.176 25 C 0.000 4.000 26 O -0.222 6.222 27 C -0.064 4.064 28 C -0.101 4.101 29 C 0.340 3.660 30 O -0.327 6.327 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.080 0.920 39 H 0.161 0.839 40 H 0.137 0.863 41 H 0.162 0.838 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.603 -17.499 -7.666 21.382 hybrid contribution -0.179 -0.277 1.624 1.657 sum 9.424 -17.776 -6.043 21.007 Atomic orbital electron populations 1.21770 0.95184 1.02031 1.02042 1.21956 0.96725 0.94880 1.04147 1.21627 0.96732 0.94435 0.85252 0.86830 1.22177 0.93554 1.03082 1.03753 1.46440 1.47160 1.27998 1.09294 1.22021 0.82330 0.87354 0.86218 1.90851 1.35707 1.24591 1.80716 1.86102 1.57799 1.27085 1.10353 1.23208 1.15073 1.07830 0.93475 1.21931 0.83473 0.86512 0.98463 1.17984 1.08066 0.93134 0.99177 1.20848 0.95918 0.92318 0.97315 1.20898 1.04653 1.01045 0.97232 1.18680 0.93103 0.88425 0.88748 1.83584 1.61699 1.23643 1.39610 1.20954 1.30716 0.78133 1.16171 0.87011 1.24541 0.95882 0.95149 0.98293 1.69626 1.36884 1.06679 1.36469 0.86170 0.78824 0.81075 0.81081 1.19550 1.20553 1.17567 1.17932 1.01721 0.88230 0.92164 1.86147 1.71363 1.17863 1.46839 1.22902 1.01505 0.80170 1.01820 1.20779 0.97284 0.98834 0.93219 1.17656 0.78235 0.79311 0.90751 1.90991 1.49529 1.58357 1.33821 0.92097 0.92170 0.93303 0.90099 0.89855 0.90421 0.90766 0.91978 0.83883 0.86261 0.83788 0.90532 0.92914 0.89190 0.93798 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.80 37.16 0.36 -1.03 16 2 C -0.14 -1.25 5.31 -26.73 -0.14 -1.39 16 3 C 0.12 1.28 2.57 -67.93 -0.17 1.11 16 4 H 0.11 1.25 7.00 -51.93 -0.36 0.89 16 5 C -0.17 -1.54 9.14 37.15 0.34 -1.20 16 6 N -0.56 -6.75 1.88 -113.93 -0.21 -6.96 16 7 C 0.54 6.58 7.64 53.62 0.41 6.99 16 8 O -0.44 -5.88 14.48 5.24 0.08 -5.80 16 9 S -0.05 -0.56 23.18 -107.50 -2.49 -3.06 16 10 C -0.28 -3.50 6.32 -37.02 -0.23 -3.73 16 11 C 0.12 1.47 9.86 -37.01 -0.36 1.11 16 12 C -0.18 -2.80 5.35 -105.06 -0.56 -3.36 16 13 C -0.05 -0.73 9.78 -39.10 -0.38 -1.11 16 14 C -0.22 -4.33 9.14 -39.50 -0.36 -4.69 16 15 C 0.17 3.74 6.67 -38.75 -0.26 3.48 16 16 O -0.18 -4.72 8.35 -13.94 -0.12 -4.84 16 17 C -0.39 -10.27 9.94 30.90 0.31 -9.97 16 18 H 0.11 2.97 5.42 -52.49 -0.28 2.69 16 19 C 0.07 1.80 5.49 -17.51 -0.10 1.71 16 20 N -0.86 -23.53 13.96 55.48 0.77 -22.75 16 21 Si 0.90 21.00 28.62 -169.99 -4.86 16.13 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.25 -6.00 7.11 56.52 0.40 -5.60 16 25 C 0.04 0.90 6.70 -39.13 -0.26 0.64 16 26 O -0.31 -6.20 10.28 -34.21 -0.35 -6.55 16 27 C 0.03 0.46 9.81 101.05 0.99 1.45 16 28 C -0.08 -1.41 5.91 -38.97 -0.23 -1.64 16 29 C 0.55 7.49 6.97 -13.93 -0.10 7.40 16 30 O -0.45 -7.26 11.97 5.18 0.06 -7.20 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.51 7.75 -51.93 -0.40 0.10 16 34 H 0.08 0.82 6.30 -51.93 -0.33 0.49 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.75 6.45 -51.93 -0.34 0.41 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.14 2.92 5.62 -52.48 -0.29 2.62 16 42 H 0.28 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.05 0.74 7.40 -51.93 -0.38 0.36 16 44 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.04 0.57 7.65 -51.93 -0.40 0.17 16 46 H 0.12 1.95 4.49 -52.48 -0.24 1.71 16 LS Contribution 391.80 15.07 5.90 5.90 Total: -1.00 -29.57 391.80 -7.52 -37.09 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.54 Total: 2.30 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.75 Total: -4.25 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.56 Total: -29.72 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.33 Total: -24.39 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.86 Total: 16.13 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -2.49 Total: -3.06 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.57 -7.52 -37.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409013475.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.185 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds