Wall clock time and date at job start Tue Mar 31 2020 05:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47123 * 2 1 4 4 H 1.09001 * 109.46730 * 304.99797 * 3 2 1 5 5 C 1.53003 * 109.46977 * 185.00157 * 3 2 1 6 6 N 1.46496 * 109.47015 * 65.00023 * 3 2 1 7 7 C 1.33793 * 120.24004 * 59.97797 * 6 3 2 8 8 O 1.21637 * 126.55255 * 0.03954 * 7 6 3 9 9 S 1.77223 * 106.89123 * 180.02562 * 7 6 3 10 10 C 1.77487 * 94.57212 * 0.02562 * 9 7 6 11 11 C 1.35787 * 127.96860 * 179.97438 * 10 9 7 12 12 C 1.46771 * 120.00126 * 171.98486 * 11 10 9 13 13 C 1.40123 * 120.08148 * 321.79133 * 12 11 10 14 14 C 1.37626 * 119.98861 * 180.02562 * 13 12 11 15 15 C 1.39080 * 120.17039 * 359.97438 * 14 13 12 16 16 O 1.35610 * 119.91455 * 180.02562 * 15 14 13 17 17 C 1.34762 * 117.00052 * 354.30054 * 16 15 14 18 18 H 1.07997 * 119.99678 * 5.09831 * 17 16 15 19 19 C 1.38688 * 120.00055 * 185.10002 * 17 16 15 20 20 N 1.31535 * 119.99951 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99850 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47172 * 59.99917 * 21 19 17 23 23 H 1.48498 * 109.46913 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46955 * 299.99817 * 21 19 17 25 25 C 1.39641 * 120.17064 * 0.02562 * 15 14 13 26 26 O 1.35957 * 119.99154 * 179.72125 * 25 15 14 27 27 C 1.42905 * 116.99408 * 180.02562 * 26 25 15 28 28 C 1.38046 * 120.01005 * 0.02562 * 25 15 14 29 29 C 1.32257 * 120.23949 * 240.27313 * 6 3 2 30 30 O 1.21708 * 122.52770 * 0.02562 * 29 6 3 31 31 H 1.08997 * 109.47016 * 299.99797 * 1 2 3 32 32 H 1.08998 * 109.46734 * 60.00218 * 1 2 3 33 33 H 1.09002 * 109.46784 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46612 * 239.99943 * 2 1 3 35 35 H 1.08999 * 109.47334 * 120.00239 * 2 1 3 36 36 H 1.09004 * 109.46872 * 179.97438 * 5 3 2 37 37 H 1.08994 * 109.47204 * 300.00094 * 5 3 2 38 38 H 1.09000 * 109.47313 * 59.99976 * 5 3 2 39 39 H 1.07995 * 119.99543 * 351.98171 * 11 10 9 40 40 H 1.07996 * 120.01162 * 0.05211 * 13 12 11 41 41 H 1.08004 * 119.91553 * 180.02562 * 14 13 12 42 42 H 0.96996 * 119.99900 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.46485 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.46680 * 299.99412 * 27 26 25 45 45 H 1.08997 * 109.47584 * 59.99930 * 27 26 25 46 46 H 1.08003 * 120.08572 * 179.97438 * 28 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1258 6 7 1.6525 2.0974 1.2518 7 6 2.0708 1.6094 2.4252 8 8 2.7752 0.6322 2.5936 9 16 1.4028 2.6593 3.6871 10 6 0.5682 3.7353 2.5488 11 6 -0.1895 4.8258 2.8326 12 6 -0.6574 5.6968 1.7479 13 6 0.1787 5.9714 0.6574 14 6 -0.2618 6.7888 -0.3584 15 6 -1.5361 7.3436 -0.3064 16 8 -1.9650 8.1480 -1.3104 17 6 -1.0693 8.4637 -2.2665 18 1 -0.0873 8.0144 -2.2559 19 6 -1.4086 9.3656 -3.2640 20 7 -2.6048 9.9124 -3.2771 21 14 -0.1667 9.8037 -4.5888 22 1 0.2193 8.5765 -5.3307 23 1 -0.7708 10.7810 -5.5296 24 1 1.0383 10.4013 -3.9595 25 6 -2.3750 7.0746 0.7771 26 8 -3.6179 7.6234 0.8269 27 6 -4.4220 7.3057 1.9648 28 6 -1.9402 6.2565 1.8005 29 6 0.8817 3.1720 1.2304 30 8 0.4656 3.6584 0.1953 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.9282 2.4720 -0.1262 37 1 3.9995 0.9052 0.7160 38 1 3.8533 0.9570 -1.0571 39 1 -0.4479 5.0520 3.8564 40 1 1.1684 5.5414 0.6138 41 1 0.3834 6.9994 -1.1985 42 1 -2.8420 10.5434 -3.9745 43 1 -5.3864 7.8065 1.8792 44 1 -4.5758 6.2276 2.0113 45 1 -3.9175 7.6403 2.8712 46 1 -2.5879 6.0479 2.6392 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409013480.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:37 Heat of formation + Delta-G solvation = -62.264967 kcal Electronic energy + Delta-G solvation = -32416.040226 eV Core-core repulsion = 27979.067554 eV Total energy + Delta-G solvation = -4436.972672 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87636 -39.78555 -38.87969 -37.73056 -36.79028 -36.09214 -34.57403 -33.07022 -32.32322 -30.46835 -29.70371 -28.73849 -26.70848 -25.76343 -25.28756 -24.76157 -23.63785 -21.90205 -21.70485 -20.55058 -19.67452 -18.72828 -18.25087 -17.64856 -16.93871 -16.70325 -16.30219 -15.78700 -15.56318 -15.26078 -15.17477 -14.81216 -14.60260 -14.43156 -14.13984 -14.07014 -13.90876 -13.69302 -13.64082 -13.48841 -13.39320 -12.77761 -12.54444 -12.19298 -12.13321 -11.85110 -11.69394 -11.59402 -11.55674 -11.37705 -11.31150 -11.25660 -11.06342 -10.88062 -10.80286 -10.58345 -10.43540 -10.13548 -9.92289 -9.75033 -9.63168 -9.05611 -8.31460 -7.93943 -6.93026 -6.69150 -4.17315 0.34805 0.72694 1.49532 1.58529 2.15170 2.37235 2.61677 2.95143 3.02567 3.05608 3.06814 3.78778 3.91838 4.11824 4.36843 4.45505 4.68699 4.71111 4.84498 4.94269 5.02486 5.04399 5.14241 5.30950 5.35536 5.37115 5.46698 5.49749 5.55570 5.58307 5.62666 5.73312 5.73729 5.79556 5.82431 5.87976 5.96255 6.06001 6.16489 6.23236 6.44295 6.66647 6.74954 6.83658 6.90962 7.04987 7.21916 7.45075 7.58691 7.72499 8.05141 8.73712 9.41890 10.45971 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.009913 B = 0.002787 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.016570 B =10045.907728 C =11780.850567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C 0.123 3.877 4 H 0.115 0.885 5 C -0.167 4.167 6 N -0.563 5.563 7 C 0.541 3.459 8 O -0.446 6.446 9 S -0.055 6.055 10 C -0.284 4.284 11 C 0.122 3.878 12 C -0.191 4.191 13 C 0.003 3.997 14 C -0.231 4.231 15 C 0.158 3.842 16 O -0.141 6.141 17 C -0.386 4.386 18 H 0.099 0.901 19 C 0.042 3.958 20 N -0.840 5.840 21 Si 0.946 3.054 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.266 1.266 25 C 0.045 3.955 26 O -0.304 6.304 27 C 0.031 3.969 28 C -0.125 4.125 29 C 0.550 3.450 30 O -0.452 6.452 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.139 0.861 40 H 0.111 0.889 41 H 0.136 0.864 42 H 0.276 0.724 43 H 0.091 0.909 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.960 -13.095 10.099 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.019 3.981 4 H 0.133 0.867 5 C -0.225 4.225 6 N -0.309 5.309 7 C 0.222 3.778 8 O -0.321 6.321 9 S 0.182 5.818 10 C -0.399 4.399 11 C 0.097 3.903 12 C -0.195 4.195 13 C -0.016 4.016 14 C -0.251 4.251 15 C 0.100 3.900 16 O -0.040 6.040 17 C -0.461 4.461 18 H 0.117 0.883 19 C -0.166 4.166 20 N -0.471 5.471 21 Si 0.769 3.231 22 H -0.191 1.191 23 H -0.200 1.200 24 H -0.191 1.191 25 C 0.000 4.000 26 O -0.218 6.218 27 C -0.065 4.065 28 C -0.145 4.145 29 C 0.340 3.660 30 O -0.325 6.325 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.156 0.844 40 H 0.129 0.871 41 H 0.153 0.847 42 H 0.086 0.914 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.786 -13.011 10.547 17.720 hybrid contribution 0.456 -0.025 -1.593 1.657 sum 6.242 -13.036 8.954 17.002 Atomic orbital electron populations 1.21758 0.95118 1.01854 1.02234 1.21954 0.96760 0.94936 1.04025 1.21625 0.96650 0.94459 0.85341 0.86735 1.22176 0.93568 1.03069 1.03698 1.46428 1.46758 1.28431 1.09234 1.21995 0.82404 0.87216 0.86217 1.90843 1.35961 1.24554 1.80743 1.86026 1.56840 1.28180 1.10787 1.23135 1.17741 1.05663 0.93367 1.21844 0.83930 0.85852 0.98716 1.17871 0.96429 1.07158 0.98024 1.20810 0.98132 0.92168 0.90450 1.20743 0.96616 1.05544 1.02155 1.18924 0.91318 0.92413 0.87297 1.83968 1.38015 1.53842 1.28216 1.21558 0.95738 1.25314 1.03508 0.88335 1.25449 0.97571 0.95231 0.98318 1.70042 1.18766 1.25632 1.32704 0.85698 0.79232 0.78991 0.79165 1.19112 1.19983 1.19097 1.17928 0.86203 1.00745 0.95130 1.86240 1.23856 1.68564 1.43114 1.22903 0.94967 1.00327 0.88320 1.20702 0.96313 0.99203 0.98306 1.17645 0.78119 0.79534 0.90680 1.91001 1.48631 1.59150 1.33672 0.93307 0.92073 0.92251 0.89922 0.90185 0.91956 0.90811 0.90452 0.84358 0.87105 0.84657 0.91370 0.89020 0.93554 0.93462 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.80 37.16 0.36 -1.26 16 2 C -0.14 -1.40 5.30 -26.73 -0.14 -1.55 16 3 C 0.12 1.41 2.57 -67.93 -0.17 1.23 16 4 H 0.11 1.40 7.00 -51.93 -0.36 1.04 16 5 C -0.17 -1.66 9.14 37.16 0.34 -1.32 16 6 N -0.56 -7.31 1.88 -113.93 -0.21 -7.53 16 7 C 0.54 7.04 7.64 53.62 0.41 7.45 16 8 O -0.45 -6.24 14.48 5.24 0.08 -6.16 16 9 S -0.06 -0.66 23.18 -107.50 -2.49 -3.15 16 10 C -0.28 -3.79 6.32 -37.02 -0.23 -4.03 16 11 C 0.12 1.58 9.86 -37.01 -0.37 1.21 16 12 C -0.19 -3.14 5.36 -105.06 -0.56 -3.71 16 13 C 0.00 0.06 6.92 -39.10 -0.27 -0.21 16 14 C -0.23 -4.89 9.14 -39.49 -0.36 -5.25 16 15 C 0.16 3.75 6.67 -38.75 -0.26 3.49 16 16 O -0.14 -3.90 9.52 -13.95 -0.13 -4.04 16 17 C -0.39 -10.29 9.48 30.90 0.29 -9.99 16 18 H 0.10 2.40 5.18 -52.49 -0.27 2.13 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.84 -23.52 13.67 55.48 0.76 -22.76 16 21 Si 0.95 19.38 29.55 -169.99 -5.02 14.36 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 25 C 0.04 0.93 6.70 -39.13 -0.26 0.67 16 26 O -0.30 -6.27 10.28 -34.22 -0.35 -6.62 16 27 C 0.03 0.42 9.81 101.05 0.99 1.42 16 28 C -0.13 -2.12 8.78 -38.97 -0.34 -2.46 16 29 C 0.55 8.09 6.96 -13.93 -0.10 7.99 16 30 O -0.45 -7.83 12.23 5.18 0.06 -7.77 16 31 H 0.05 0.59 7.75 -51.93 -0.40 0.19 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.89 6.31 -51.93 -0.33 0.56 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.79 6.45 -51.93 -0.33 0.46 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.11 1.92 6.22 -52.49 -0.33 1.59 16 41 H 0.14 2.85 5.62 -52.48 -0.29 2.55 16 42 H 0.28 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.57 7.67 -51.93 -0.40 0.17 16 45 H 0.05 0.56 7.65 -51.93 -0.40 0.16 16 46 H 0.12 1.64 6.28 -52.48 -0.33 1.31 16 LS Contribution 393.40 15.07 5.93 5.93 Total: -1.00 -30.75 393.40 -7.70 -38.45 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.54 Total: 4.60 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -0.77 Total: -5.31 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.54 Total: -30.28 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.35 Total: -24.59 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: -0.66 SS G_CDS: -2.49 Total: -3.15 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.75 -7.70 -38.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409013480.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.815 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds