Wall clock time and date at job start Tue Mar 31 2020 05:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86805 * 120.00115 * 2 1 4 4 H 1.48492 * 109.47434 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47099 * 300.00456 * 3 2 1 6 6 H 1.48500 * 109.46840 * 59.99698 * 3 2 1 7 7 C 1.40052 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00247 * 186.20514 * 7 2 1 9 9 C 1.46379 * 119.99718 * 6.20246 * 7 2 1 10 10 O 1.21685 * 119.99895 * 352.15649 * 9 7 2 11 11 N 1.34772 * 119.99812 * 172.15450 * 9 7 2 12 12 C 1.46504 * 119.99861 * 182.00813 * 11 9 7 13 13 C 1.53002 * 109.46935 * 272.51107 * 12 11 9 14 14 N 1.46500 * 109.47112 * 180.31899 * 13 12 11 15 15 C 1.36889 * 126.39402 * 94.74736 * 14 13 12 16 16 C 1.34670 * 106.81595 * 180.02562 * 15 14 13 17 17 N 1.34136 * 108.01868 * 0.02562 * 16 15 14 18 18 C 1.30491 * 109.25634 * 359.72596 * 17 16 15 19 19 C 1.46501 * 120.00122 * 2.01110 * 11 9 7 20 20 C 1.50698 * 109.46950 * 278.05946 * 19 11 9 21 21 C 1.38244 * 120.00585 * 85.86445 * 20 19 11 22 22 C 1.38220 * 120.01176 * 179.97438 * 21 20 19 23 23 C 1.38261 * 120.01661 * 0.02562 * 22 21 20 24 24 C 1.38193 * 120.01394 * 359.97438 * 23 22 21 25 25 C 1.38304 * 120.00715 * 265.58986 * 20 19 11 26 26 Br 1.89101 * 120.00856 * 0.02562 * 25 20 19 27 27 H 0.96999 * 119.99897 * 4.99443 * 1 2 3 28 28 H 1.08999 * 109.46961 * 152.51568 * 12 11 9 29 29 H 1.08993 * 109.46950 * 32.51171 * 12 11 9 30 30 H 1.09005 * 109.47156 * 300.32021 * 13 12 11 31 31 H 1.08997 * 109.47057 * 60.32308 * 13 12 11 32 32 H 1.08000 * 126.59195 * 359.97308 * 15 14 13 33 33 H 1.07996 * 125.99485 * 180.02562 * 16 15 14 34 34 H 1.08001 * 125.65360 * 180.29126 * 18 17 16 35 35 H 1.08995 * 109.47531 * 38.05943 * 19 11 9 36 36 H 1.09000 * 109.47143 * 158.06091 * 19 11 9 37 37 H 1.08002 * 119.98920 * 0.02562 * 21 20 19 38 38 H 1.07993 * 119.98777 * 180.02562 * 22 21 20 39 39 H 1.08005 * 119.99042 * 179.97438 * 23 22 21 40 40 H 1.07998 * 120.00204 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3465 0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8819 2.3964 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0822 -1.2156 0.1005 9 6 1.2816 -2.4768 -0.1381 10 8 0.0651 -2.4864 -0.1084 11 7 1.9610 -3.6297 -0.2976 12 6 1.2344 -4.8889 -0.4793 13 6 0.9193 -5.4978 0.8885 14 7 0.1995 -6.7608 0.7067 15 6 0.7515 -8.0130 0.6753 16 6 -0.2614 -8.8807 0.4888 17 7 -1.4007 -8.1774 0.4079 18 6 -1.1329 -6.9074 0.5430 19 6 3.4259 -3.6239 -0.2892 20 6 3.9345 -3.2278 -1.6513 21 6 4.0801 -1.8912 -1.9731 22 6 4.5470 -1.5277 -3.2222 23 6 4.8682 -2.5006 -4.1506 24 6 4.7230 -3.8370 -3.8299 25 6 4.2610 -4.2014 -2.5778 26 35 4.0688 -6.0299 -2.1358 27 1 -0.4850 0.8369 -0.0731 28 1 1.8484 -5.5830 -1.0533 29 1 0.3046 -4.6978 -1.0149 30 1 1.8490 -5.6837 1.4264 31 1 0.3007 -4.8062 1.4603 32 1 1.7982 -8.2580 0.7793 33 1 -0.1721 -9.9546 0.4170 34 1 -1.8567 -6.1060 0.5247 35 1 3.7822 -2.9101 0.4534 36 1 3.7918 -4.6201 -0.0403 37 1 3.8297 -1.1310 -1.2479 38 1 4.6610 -0.4835 -3.4730 39 1 5.2326 -2.2161 -5.1267 40 1 4.9743 -4.5968 -4.5551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579700653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:47 Heat of formation + Delta-G solvation = 68.885034 kcal Electronic energy + Delta-G solvation = -26183.589047 eV Core-core repulsion = 22432.291730 eV Total energy + Delta-G solvation = -3751.297317 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 377.048 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73429 -39.41194 -37.79456 -34.92369 -33.77893 -32.76782 -32.15195 -31.08890 -29.33992 -29.10645 -28.41927 -26.48650 -25.41340 -23.16872 -22.15395 -21.30808 -21.02484 -20.61691 -19.24425 -17.12938 -16.97186 -16.56677 -15.94501 -15.29701 -15.06686 -14.83635 -14.49869 -14.41558 -14.04163 -13.68385 -13.48800 -13.25379 -13.08793 -12.96182 -12.90736 -12.47603 -12.31638 -11.88616 -11.70999 -11.38538 -11.27278 -11.09555 -10.99506 -10.96360 -10.49847 -10.38394 -10.16014 -9.82365 -9.73277 -9.43527 -9.02585 -8.61066 -8.47400 -8.29014 -7.81293 -7.56249 -6.40907 -4.84983 1.32267 1.55552 1.77038 2.33180 2.97550 3.03166 3.08223 3.09593 3.41952 3.80322 3.94070 4.33881 4.48195 4.96816 4.98413 5.00372 5.01923 5.17875 5.20609 5.31637 5.45360 5.55688 5.62100 5.66107 5.69858 5.77762 5.83160 5.93914 6.00785 6.16559 6.23362 6.37584 6.42936 6.59091 6.66579 6.79146 6.96851 7.08885 7.25597 7.27598 7.46200 7.86501 8.08559 8.32662 8.79724 9.14309 10.34515 10.52999 Molecular weight = 377.05amu Principal moments of inertia in cm(-1) A = 0.008085 B = 0.005004 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3462.179597 B = 5594.244160 C = 8612.914935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.090 3.910 3 Si 0.894 3.106 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.557 3.443 10 O -0.569 6.569 11 N -0.629 5.629 12 C 0.108 3.892 13 C 0.088 3.912 14 N -0.446 5.446 15 C -0.060 4.060 16 C -0.039 4.039 17 N -0.505 5.505 18 C 0.188 3.812 19 C 0.157 3.843 20 C -0.064 4.064 21 C -0.089 4.089 22 C -0.112 4.112 23 C -0.122 4.122 24 C -0.104 4.104 25 C -0.084 4.084 26 Br -0.062 7.062 27 H 0.270 0.730 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.203 0.797 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.161 0.839 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.064 -8.010 -3.709 14.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.364 3.636 10 O -0.451 6.451 11 N -0.365 5.365 12 C -0.017 4.017 13 C -0.036 4.036 14 N -0.128 5.128 15 C -0.194 4.194 16 C -0.187 4.187 17 N -0.223 5.223 18 C -0.094 4.094 19 C 0.033 3.967 20 C -0.068 4.068 21 C -0.108 4.108 22 C -0.130 4.130 23 C -0.141 4.141 24 C -0.124 4.124 25 C -0.163 4.163 26 Br 0.024 6.976 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.184 0.816 33 H 0.181 0.819 34 H 0.220 0.780 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.178 0.822 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.412 -8.770 -3.540 14.066 hybrid contribution 1.390 1.603 -0.228 2.134 sum 11.802 -7.167 -3.768 14.313 Atomic orbital electron populations 1.69993 1.07040 1.27716 1.34069 1.25676 0.94569 1.00134 0.92664 0.86517 0.80659 0.82331 0.78649 1.18425 1.19910 1.19982 1.21069 0.93978 0.89356 1.53469 0.90325 1.18319 0.86940 0.82056 0.76315 1.90625 1.13932 1.85344 1.55186 1.48068 1.03592 1.06437 1.78428 1.21477 0.98908 0.87372 0.93962 1.22563 0.97468 0.82373 1.01156 1.45637 1.08197 1.07174 1.51750 1.22666 1.00178 0.84244 1.12338 1.22205 0.88497 0.99462 1.08573 1.70282 1.28908 1.02495 1.20615 1.25056 0.83982 0.95957 1.04445 1.20289 0.82747 1.01465 0.92236 1.20399 0.96391 0.92783 0.97220 1.22016 0.94732 0.96282 0.97744 1.21357 0.98170 0.99546 0.93962 1.21073 1.01100 0.92362 0.99548 1.20924 1.00050 0.96752 0.94668 1.21695 1.07734 0.89486 0.97410 1.96573 1.96782 1.10308 1.93973 0.91889 0.90779 0.90581 0.89665 0.88264 0.81566 0.81907 0.78013 0.89332 0.90895 0.82150 0.85807 0.85884 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.84 11.86 55.55 0.66 -20.18 16 2 C 0.09 2.24 5.49 -17.36 -0.10 2.15 16 3 Si 0.89 17.89 29.57 -169.99 -5.03 12.86 16 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 7 C -0.54 -13.09 6.94 -35.63 -0.25 -13.33 16 8 H 0.08 1.69 3.98 -52.49 -0.21 1.48 16 9 C 0.56 13.87 7.51 -12.99 -0.10 13.77 16 10 O -0.57 -16.51 14.69 5.20 0.08 -16.44 16 11 N -0.63 -12.39 2.49 -176.73 -0.44 -12.83 16 12 C 0.11 1.94 5.65 -4.04 -0.02 1.91 16 13 C 0.09 1.39 6.47 -4.04 -0.03 1.36 16 14 N -0.45 -6.82 2.75 -118.58 -0.33 -7.15 16 15 C -0.06 -0.83 11.58 -16.56 -0.19 -1.02 16 16 C -0.04 -0.57 11.87 -17.81 -0.21 -0.78 16 17 N -0.50 -8.60 11.25 -14.67 -0.17 -8.76 16 18 C 0.19 3.07 12.56 -90.38 -1.14 1.93 16 19 C 0.16 2.60 5.03 -5.19 -0.03 2.57 16 20 C -0.06 -1.05 5.38 -104.60 -0.56 -1.62 16 21 C -0.09 -1.48 8.85 -39.59 -0.35 -1.83 16 22 C -0.11 -1.60 10.05 -39.58 -0.40 -1.99 16 23 C -0.12 -1.56 10.05 -39.59 -0.40 -1.95 16 24 C -0.10 -1.39 9.79 -39.56 -0.39 -1.78 16 25 C -0.08 -1.24 6.22 -39.52 -0.25 -1.49 16 26 Br -0.06 -0.82 29.38 -68.01 -2.00 -2.81 16 27 H 0.27 6.79 8.30 -40.82 -0.34 6.45 16 28 H 0.07 1.21 5.49 -51.93 -0.29 0.92 16 29 H 0.08 1.59 7.53 -51.93 -0.39 1.20 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.16 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.20 3.00 8.06 -52.49 -0.42 2.58 16 35 H 0.09 1.46 6.54 -51.93 -0.34 1.12 16 36 H 0.07 1.05 6.32 -51.93 -0.33 0.72 16 37 H 0.16 2.87 4.60 -52.49 -0.24 2.63 16 38 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 354.13 15.07 5.34 5.34 Total: -1.00 -31.18 354.13 -10.59 -41.77 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -4.31 Total: 10.29 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -4.40 Total: -2.09 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: -0.27 Total: -48.92 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.08 Total: -16.44 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.86 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -2.00 Total: -2.81 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.18 -10.59 -41.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579700653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.659 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds