Wall clock time and date at job start Tue Mar 31 2020 05:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48492 * 109.47608 * 240.00046 * 3 2 1 5 5 H 1.48506 * 109.46921 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 119.99581 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00111 * 154.82280 * 7 2 1 9 9 N 1.36943 * 120.00082 * 334.81430 * 7 2 1 10 10 C 1.46500 * 119.99661 * 129.84126 * 9 7 2 11 11 C 1.54967 * 110.92109 * 307.94219 * 10 9 7 12 12 C 1.54264 * 104.15933 * 156.29636 * 11 10 9 13 13 C 1.53870 * 106.64240 * 336.44713 * 12 11 10 14 14 C 1.54265 * 106.59927 * 359.97394 * 13 12 11 15 15 S 1.65598 * 120.00306 * 309.84443 * 9 7 2 16 16 O 1.42099 * 106.40270 * 23.53466 * 15 9 7 17 17 O 1.42094 * 106.40393 * 156.45731 * 15 9 7 18 18 C 1.76205 * 107.21471 * 269.99895 * 15 9 7 19 19 C 1.38639 * 120.29941 * 269.72327 * 18 15 9 20 20 N 1.31646 * 121.51164 * 179.68205 * 19 18 15 21 21 C 1.32498 * 121.68917 * 0.62309 * 20 19 18 22 22 O 1.34796 * 133.15163 * 179.65414 * 21 20 19 23 23 N 1.41312 * 109.45139 * 180.02562 * 22 21 20 24 24 C 1.29765 * 109.75159 * 359.97438 * 23 22 21 25 25 C 1.50700 * 126.34180 * 180.02562 * 24 23 22 26 26 C 1.53001 * 117.49970 * 8.58677 * 25 24 23 27 27 C 1.52999 * 117.50027 * 299.96250 * 25 24 23 28 28 C 1.40544 * 119.95651 * 359.67094 * 21 20 19 29 29 C 1.38181 * 120.30526 * 89.99893 * 18 15 9 30 30 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 31 31 H 1.09003 * 110.67014 * 184.63859 * 10 9 7 32 32 H 1.08998 * 110.48032 * 37.64516 * 11 10 9 33 33 H 1.08997 * 110.53172 * 274.97422 * 11 10 9 34 34 H 1.08994 * 110.03554 * 217.13328 * 12 11 10 35 35 H 1.09011 * 110.03466 * 95.75131 * 12 11 10 36 36 H 1.09001 * 110.03569 * 119.25723 * 13 12 11 37 37 H 1.09000 * 110.03420 * 240.64177 * 13 12 11 38 38 H 1.09002 * 110.49122 * 142.28674 * 14 13 12 39 39 H 1.09004 * 110.48676 * 264.80570 * 14 13 12 40 40 H 1.08005 * 119.24336 * 359.97438 * 19 18 15 41 41 H 1.09000 * 115.54590 * 154.29060 * 25 24 23 42 42 H 1.09001 * 117.50092 * 359.97438 * 26 25 24 43 43 H 1.08992 * 117.49954 * 145.01869 * 26 25 24 44 44 H 1.09001 * 117.49489 * 214.97729 * 27 25 24 45 45 H 1.08997 * 117.50107 * 359.97438 * 27 25 24 46 46 H 1.08001 * 120.97163 * 0.02562 * 29 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0133 -1.2465 -0.3985 9 7 1.4230 -2.3320 0.5036 10 6 1.4204 -3.5688 -0.2815 11 6 0.8666 -3.3181 -1.7070 12 6 1.4720 -4.4574 -2.5527 13 6 2.7434 -4.9218 -1.8210 14 6 2.8676 -4.0481 -0.5556 15 16 0.7159 -2.3001 2.0007 16 8 0.3820 -0.9431 2.2580 17 8 -0.2394 -3.3519 2.0158 18 6 1.9566 -2.7379 3.1729 19 6 2.1477 -4.0648 3.5265 20 7 3.0715 -4.4193 4.3948 21 6 3.8546 -3.5259 4.9816 22 8 4.8477 -3.6243 5.8877 23 7 5.3532 -2.3361 6.1737 24 6 4.7104 -1.4486 5.4786 25 6 4.9456 0.0399 5.4944 26 6 6.1700 0.5536 6.2545 27 6 4.7679 0.7691 6.8276 28 6 3.7141 -2.1613 4.6763 29 6 2.7441 -1.7614 3.7523 30 1 -0.4849 0.8401 0.0004 31 1 0.8458 -4.3446 0.2246 32 1 1.1978 -2.3489 -2.0798 33 1 -0.2217 -3.3775 -1.7102 34 1 1.7264 -4.0899 -3.5468 35 1 0.7634 -5.2822 -2.6300 36 1 2.6516 -5.9715 -1.5423 37 1 3.6149 -4.7803 -2.4602 38 1 3.2385 -4.6395 0.2815 39 1 3.5242 -3.1982 -0.7418 40 1 1.5275 -4.8255 3.0757 41 1 4.6562 0.5711 4.5876 42 1 6.8053 -0.1849 6.7435 43 1 6.6866 1.4230 5.8478 44 1 4.3620 1.7803 6.7979 45 1 4.4804 0.1724 7.6933 46 1 2.6138 -0.7196 3.4991 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585087329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:32 Heat of formation + Delta-G solvation = 35.992236 kcal Electronic energy + Delta-G solvation = -33634.776965 eV Core-core repulsion = 29234.357796 eV Total energy + Delta-G solvation = -4400.419169 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.124 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.94565 -38.63826 -37.91453 -37.64152 -35.82782 -34.41774 -34.11610 -33.63301 -31.72576 -31.54240 -30.31579 -28.06530 -26.95375 -24.97307 -24.48713 -23.82014 -23.49968 -22.67641 -19.99842 -19.90972 -19.68032 -19.04237 -18.24041 -17.72402 -16.66604 -16.54696 -16.28711 -16.08123 -15.81965 -15.28195 -14.87090 -14.79427 -14.56014 -14.38118 -13.73380 -13.30518 -13.07997 -13.00209 -12.89490 -12.73468 -12.45442 -12.27008 -12.15242 -12.03083 -11.93328 -11.75860 -11.64682 -11.23384 -10.90696 -10.86749 -10.78173 -10.60514 -10.53772 -10.50843 -10.49647 -10.43663 -10.32355 -10.22148 -9.86788 -9.73748 -9.46033 -9.34182 -9.04767 -8.86708 -7.79677 -6.72522 -4.33531 0.49578 0.93386 1.75235 1.88859 2.11412 3.09421 3.13862 3.16174 3.44164 3.55023 3.59965 3.92424 3.97686 4.43969 4.50603 4.53679 4.64167 4.69351 4.74028 4.92217 5.06637 5.13583 5.15154 5.22778 5.29011 5.33698 5.40245 5.43272 5.59162 5.70510 5.80333 5.88184 5.94011 5.95449 6.02432 6.12718 6.14527 6.20541 6.30182 6.35874 6.40130 6.41622 6.54554 6.76679 6.93904 7.04088 7.05427 7.23024 7.46199 7.67667 8.04144 8.70007 9.14290 10.32143 Molecular weight = 377.12amu Principal moments of inertia in cm(-1) A = 0.009229 B = 0.004103 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3033.215668 B = 6822.586511 C = 8270.348872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.762 5.762 2 C 0.062 3.938 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.085 0.915 9 N -0.800 5.800 10 C 0.152 3.848 11 C -0.112 4.112 12 C -0.124 4.124 13 C -0.120 4.120 14 C -0.139 4.139 15 S 2.540 3.460 16 O -0.945 6.945 17 O -1.008 7.008 18 C -0.740 4.740 19 C 0.249 3.751 20 N -0.497 5.497 21 C 0.308 3.692 22 O -0.086 6.086 23 N -0.288 5.288 24 C 0.185 3.815 25 C -0.108 4.108 26 C -0.158 4.158 27 C -0.152 4.152 28 C -0.266 4.266 29 C 0.109 3.891 30 H 0.283 0.717 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.078 0.922 40 H 0.183 0.817 41 H 0.141 0.859 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.100 0.900 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.293 0.692 1.984 7.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.158 4.158 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.417 4.417 8 H 0.103 0.897 9 N -0.622 5.622 10 C 0.044 3.956 11 C -0.152 4.152 12 C -0.162 4.162 13 C -0.158 4.158 14 C -0.179 4.179 15 S 2.637 3.363 16 O -0.933 6.933 17 O -0.997 6.997 18 C -0.815 4.815 19 C 0.086 3.914 20 N -0.217 5.217 21 C 0.126 3.874 22 O -0.089 6.089 23 N -0.035 5.035 24 C 0.005 3.995 25 C -0.128 4.128 26 C -0.195 4.195 27 C -0.190 4.190 28 C -0.273 4.273 29 C 0.081 3.919 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.200 0.800 41 H 0.159 0.841 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.118 0.882 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.349 -0.452 3.736 8.257 hybrid contribution 0.316 1.401 -0.253 1.458 sum 7.665 0.949 3.483 8.472 Atomic orbital electron populations 1.69869 1.07217 1.30033 1.32563 1.25728 0.94908 1.00818 0.94327 0.86133 0.79558 0.80792 0.79161 1.19616 1.20485 1.19263 1.19007 0.98969 0.85882 1.37803 0.89707 1.52868 1.73415 1.13558 1.22353 1.21756 0.94609 0.86400 0.92810 1.22504 0.99671 0.99131 0.93854 1.22119 0.96776 0.98537 0.98806 1.22035 0.97817 0.98959 0.96978 1.22774 0.99071 0.99397 0.96624 1.12103 0.77513 0.73540 0.73101 1.93402 1.81817 1.33691 1.84370 1.93309 1.60974 1.58535 1.86892 1.33814 1.25141 1.00462 1.22074 1.22673 0.88038 0.94342 0.86357 1.66816 1.06867 1.36029 1.12015 1.20584 0.88502 0.89762 0.88602 1.89183 1.42890 1.25461 1.51407 1.79910 1.17145 0.86467 1.19953 1.23460 0.90150 0.95607 0.90251 1.20614 1.06695 0.85896 0.99546 1.23101 0.90774 1.03417 1.02213 1.23112 0.99665 1.01696 0.94567 1.21375 1.04646 0.93697 1.07545 1.20901 0.85330 1.00556 0.85119 0.90632 0.89664 0.89331 0.92133 0.92381 0.92569 0.92533 0.92484 0.92842 0.90383 0.79996 0.84108 0.87696 0.87261 0.87020 0.88169 0.82465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.75 11.74 55.49 0.65 -18.09 16 2 C 0.06 1.41 3.99 -17.43 -0.07 1.34 16 3 Si 0.92 17.75 29.62 -169.99 -5.04 12.71 16 4 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 7 C -0.27 -5.76 7.46 -15.06 -0.11 -5.88 16 8 H 0.09 1.72 6.95 -52.48 -0.36 1.36 16 9 N -0.80 -16.99 2.76 -51.45 -0.14 -17.13 16 10 C 0.15 2.83 3.31 -65.89 -0.22 2.62 16 11 C -0.11 -1.97 6.35 -25.03 -0.16 -2.13 16 12 C -0.12 -1.74 6.80 -25.62 -0.17 -1.91 16 13 C -0.12 -1.62 6.80 -25.62 -0.17 -1.79 16 14 C -0.14 -2.21 6.39 -25.07 -0.16 -2.38 16 15 S 2.54 57.31 5.46 -107.50 -0.59 56.72 16 16 O -0.94 -23.69 13.55 -57.17 -0.77 -24.47 16 17 O -1.01 -24.37 15.85 -57.17 -0.91 -25.28 16 18 C -0.74 -14.58 5.99 -39.45 -0.24 -14.82 16 19 C 0.25 4.63 10.66 -17.48 -0.19 4.44 16 20 N -0.50 -9.49 10.38 -12.98 -0.13 -9.63 16 21 C 0.31 5.86 8.64 -16.40 -0.14 5.71 16 22 O -0.09 -1.59 12.05 7.77 0.09 -1.50 16 23 N -0.29 -4.75 12.42 34.88 0.43 -4.32 16 24 C 0.19 2.85 6.99 -80.17 -0.56 2.29 16 25 C -0.11 -1.26 6.31 -91.77 -0.58 -1.83 16 26 C -0.16 -1.45 10.14 -26.73 -0.27 -1.72 16 27 C -0.15 -1.42 10.23 -26.73 -0.27 -1.69 16 28 C -0.27 -4.73 6.34 -105.14 -0.67 -5.40 16 29 C 0.11 2.02 9.69 -39.02 -0.38 1.64 16 30 H 0.28 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.09 1.59 6.95 -51.93 -0.36 1.23 16 32 H 0.09 1.68 7.06 -51.93 -0.37 1.32 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.29 6.75 -51.93 -0.35 0.94 16 40 H 0.18 3.01 7.60 -52.48 -0.40 2.61 16 41 H 0.14 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.10 1.03 7.92 -51.93 -0.41 0.62 16 43 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.16 2.73 7.70 -52.49 -0.40 2.33 16 LS Contribution 391.90 15.07 5.91 5.91 Total: -1.00 -28.67 391.90 -10.88 -39.55 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.02 Total: 7.02 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -4.36 Total: -21.50 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 0.81 Total: -49.17 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -1.59 Total: -51.24 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.04 Total: 12.71 kcal Atomic # 16 Polarization: 57.31 SS G_CDS: -0.59 Total: 56.72 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.67 -10.88 -39.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585087329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.538 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds