Wall clock time and date at job start Tue Mar 31 2020 05:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48500 * 109.47276 * 275.26941 * 3 2 1 5 5 H 1.48505 * 109.47386 * 35.27272 * 3 2 1 6 6 H 1.48505 * 109.47199 * 155.26897 * 3 2 1 7 7 C 1.39882 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00038 * 347.24533 * 7 2 1 9 9 C 1.41153 * 120.00251 * 167.25115 * 7 2 1 10 10 C 1.40891 * 120.15220 * 331.10183 * 9 7 2 11 11 C 1.36383 * 119.84584 * 179.97438 * 10 9 7 12 12 C 1.39459 * 120.17907 * 359.97438 * 11 10 9 13 13 N 1.39280 * 119.83919 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99632 * 338.69650 * 13 12 11 15 15 O 1.21571 * 120.00242 * 354.44388 * 14 13 12 16 16 N 1.34774 * 119.99304 * 174.44981 * 14 13 12 17 17 C 1.46504 * 119.99617 * 179.97438 * 16 14 13 18 18 H 1.09003 * 110.53695 * 323.83815 * 17 16 14 19 19 C 1.54788 * 110.61666 * 201.21148 * 17 16 14 20 20 C 1.54484 * 101.69020 * 266.39848 * 19 17 16 21 21 N 1.46758 * 105.47228 * 334.39289 * 20 19 17 22 22 C 1.46507 * 124.34544 * 196.99963 * 21 20 19 23 23 C 1.53780 * 113.61050 * 217.49581 * 22 21 20 24 24 C 1.53787 * 87.08046 * 220.01724 * 23 22 21 25 25 C 1.53780 * 113.61478 * 119.99757 * 22 21 20 26 26 C 1.34418 * 111.30472 * 17.01340 * 21 20 19 27 27 O 1.21278 * 124.93992 * 179.55744 * 26 21 20 28 28 C 1.39580 * 120.32350 * 0.25830 * 12 11 10 29 29 Cl 1.73600 * 119.92827 * 179.74725 * 28 12 11 30 30 C 1.36473 * 120.14645 * 359.48210 * 28 12 11 31 31 H 0.97003 * 119.99687 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.08219 * 0.02562 * 10 9 7 33 33 H 1.08004 * 119.90576 * 180.02562 * 11 10 9 34 34 H 0.97002 * 119.99966 * 158.69166 * 13 12 11 35 35 H 0.96995 * 120.00759 * 359.97438 * 16 14 13 36 36 H 1.08994 * 111.17337 * 148.23139 * 19 17 16 37 37 H 1.09003 * 110.86573 * 24.43312 * 19 17 16 38 38 H 1.08994 * 110.24072 * 215.38839 * 20 19 17 39 39 H 1.09004 * 110.24108 * 93.38925 * 20 19 17 40 40 H 1.08999 * 112.84773 * 348.79465 * 22 21 20 41 41 H 1.08999 * 113.61441 * 334.55991 * 23 22 21 42 42 H 1.08993 * 113.61748 * 105.46868 * 23 22 21 43 43 H 1.08996 * 113.61228 * 270.88829 * 24 23 22 44 44 H 1.08993 * 113.61733 * 139.98026 * 24 23 22 45 45 H 1.08999 * 113.60811 * 254.52408 * 25 22 21 46 46 H 1.08995 * 113.61626 * 25.34423 * 25 22 21 47 47 H 1.07998 * 120.09479 * 180.23707 * 30 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3790 2.1107 -1.3941 5 1 1.5004 2.6180 0.8085 6 1 3.5916 1.4106 0.5857 7 6 2.0083 -1.2114 0.0005 8 1 1.4883 -2.1351 0.2074 9 6 3.3937 -1.2266 -0.2692 10 6 3.9644 -0.2395 -1.0968 11 6 5.3039 -0.2599 -1.3529 12 6 6.1088 -1.2542 -0.7975 13 7 7.4757 -1.2685 -1.0641 14 6 7.9569 -0.6332 -2.1510 15 8 7.1909 -0.1341 -2.9522 16 7 9.2875 -0.5513 -2.3495 17 6 9.8106 0.1388 -3.5312 18 1 9.1635 -0.0320 -4.3915 19 6 11.2541 -0.3271 -3.8399 20 6 12.0921 0.7357 -3.0952 21 7 11.2379 1.9269 -3.0218 22 6 11.7253 3.2765 -2.7263 23 6 10.7658 4.0999 -1.8510 24 6 11.1137 5.3050 -2.7408 25 6 11.4474 4.2911 -3.8479 26 6 9.9510 1.6204 -3.2602 27 8 9.0351 2.4153 -3.2537 28 6 5.5502 -2.2384 0.0195 29 17 6.5607 -3.4751 0.7002 30 6 4.2123 -2.2276 0.2888 31 1 -0.4850 0.8401 0.0004 32 1 3.3429 0.5320 -1.5268 33 1 5.7425 0.4966 -1.9868 34 1 8.0814 -1.7357 -0.4676 35 1 9.8987 -0.9492 -1.7101 36 1 11.4552 -0.3022 -4.9109 37 1 11.4361 -1.3222 -3.4339 38 1 13.0017 0.9575 -3.6531 39 1 12.3392 0.3864 -2.0926 40 1 12.7568 3.2864 -2.3742 41 1 9.7250 3.7856 -1.9291 42 1 11.1000 4.2081 -0.8192 43 1 11.9778 5.8704 -2.3918 44 1 10.2575 5.9384 -2.9724 45 1 12.3320 4.5536 -4.4282 46 1 10.5939 4.0283 -4.4728 47 1 3.7817 -2.9874 0.9241 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952885651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:09 Heat of formation + Delta-G solvation = -6.629120 kcal Electronic energy + Delta-G solvation = -32178.631108 eV Core-core repulsion = 27774.320032 eV Total energy + Delta-G solvation = -4404.311076 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.129 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.28789 -39.99607 -38.33269 -37.62698 -36.62619 -35.81284 -34.58694 -34.14342 -33.13290 -30.86541 -29.78093 -29.44086 -27.36588 -25.87738 -25.44818 -24.80667 -22.37171 -22.01410 -21.57359 -20.73931 -20.36731 -19.03244 -18.29619 -17.68161 -17.49212 -16.88653 -16.55796 -15.89062 -15.57207 -15.26988 -14.92115 -14.57523 -14.42154 -14.33340 -14.14746 -13.92728 -13.76865 -13.52859 -13.01803 -12.87090 -12.83762 -12.69144 -12.61983 -12.47394 -12.29172 -11.93492 -11.71232 -11.57900 -11.39162 -11.05033 -11.03000 -10.85231 -10.79596 -10.57715 -10.41547 -10.25086 -10.08568 -9.78462 -9.67445 -9.31522 -8.97965 -8.93945 -8.86513 -7.75141 -7.18014 -6.98064 -4.49179 2.12702 2.31432 2.52914 2.66131 2.86598 3.06506 3.14094 3.23375 3.32729 3.49135 3.97531 3.98027 4.06554 4.28857 4.34759 4.39099 4.44245 4.46564 4.55602 4.63920 4.69115 4.98627 5.11572 5.28532 5.31066 5.34260 5.41430 5.47317 5.57584 5.67026 5.75231 5.86727 5.91442 6.01035 6.21537 6.27447 6.47464 6.50410 6.56411 6.72940 6.87764 6.92957 6.98999 7.23354 7.38820 7.50807 7.77572 7.89041 8.05088 8.22633 8.27148 8.50097 8.71251 8.86331 10.03078 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.002684 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.712071 B =10430.977053 C =12439.128971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.082 3.918 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.240 1.240 7 C -0.432 4.432 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.218 4.218 11 C -0.068 4.068 12 C 0.027 3.973 13 N -0.661 5.661 14 C 0.697 3.303 15 O -0.557 6.557 16 N -0.733 5.733 17 C 0.137 3.863 18 H 0.122 0.878 19 C -0.141 4.141 20 C 0.100 3.900 21 N -0.613 5.613 22 C 0.132 3.868 23 C -0.159 4.159 24 C -0.138 4.138 25 C -0.149 4.149 26 C 0.506 3.494 27 O -0.496 6.496 28 C -0.006 4.006 29 Cl -0.116 7.116 30 C -0.189 4.189 31 H 0.287 0.713 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.396 0.604 35 H 0.396 0.604 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.596 2.730 -4.557 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.138 4.138 3 Si 0.739 3.261 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.163 1.163 7 C -0.461 4.461 8 H 0.112 0.888 9 C 0.086 3.914 10 C -0.238 4.238 11 C -0.088 4.088 12 C -0.067 4.067 13 N -0.307 5.307 14 C 0.398 3.602 15 O -0.432 6.432 16 N -0.392 5.392 17 C 0.027 3.973 18 H 0.139 0.861 19 C -0.179 4.179 20 C -0.023 4.023 21 N -0.348 5.348 22 C 0.030 3.970 23 C -0.197 4.197 24 C -0.176 4.176 25 C -0.187 4.187 26 C 0.290 3.710 27 O -0.368 6.368 28 C -0.035 4.035 29 Cl -0.087 7.087 30 C -0.210 4.210 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.157 0.843 34 H 0.230 0.770 35 H 0.231 0.769 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 26.213 3.681 -5.212 26.978 hybrid contribution 1.059 0.120 0.708 1.279 sum 27.272 3.802 -4.505 27.902 Atomic orbital electron populations 1.69669 1.08006 1.30463 1.34764 1.26188 0.94880 1.01823 0.90863 0.86318 0.81245 0.79448 0.79109 1.19442 1.21958 1.16302 1.19452 0.91146 0.95769 1.39682 0.88821 1.17661 0.93373 0.90784 0.89614 1.20763 0.94803 1.03452 1.04786 1.20806 0.93231 0.96448 0.98321 1.16595 0.81685 0.99799 1.08606 1.41993 1.07317 1.55703 1.25718 1.15878 0.81915 0.80290 0.82159 1.90904 1.55289 1.51437 1.45597 1.44813 1.05829 1.61526 1.27002 1.21383 0.96090 0.89195 0.90633 0.86065 1.22961 0.92703 0.99652 1.02581 1.22111 0.94338 0.85067 1.00806 1.48317 1.08331 1.07671 1.70527 1.22602 0.98340 0.78923 0.97182 1.23521 1.02745 0.95491 0.97932 1.22631 1.01694 0.96318 0.96925 1.23360 1.02184 0.96110 0.97074 1.21337 0.82065 0.91178 0.76409 1.90721 1.42320 1.54792 1.48935 1.20096 0.91373 0.90363 1.01626 1.98258 1.70422 1.55111 1.84949 1.20456 0.89987 1.04240 1.06280 0.90228 0.87676 0.84309 0.76952 0.76950 0.88293 0.88238 0.90098 0.91106 0.87327 0.87160 0.91555 0.90228 0.90796 0.91365 0.89300 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.45 13.93 55.54 0.77 -20.67 16 2 C 0.08 2.15 5.47 -17.34 -0.09 2.06 16 3 Si 0.91 21.34 24.36 -169.99 -4.14 17.20 16 4 H -0.27 -6.24 6.77 56.52 0.38 -5.85 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.24 -5.74 6.45 56.52 0.36 -5.38 16 7 C -0.43 -11.58 9.60 -37.86 -0.36 -11.94 16 8 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 9 C 0.09 2.27 5.19 -106.80 -0.55 1.72 16 10 C -0.22 -5.48 6.84 -39.25 -0.27 -5.75 16 11 C -0.07 -1.62 8.68 -39.80 -0.35 -1.97 16 12 C 0.03 0.59 6.50 -83.52 -0.54 0.04 16 13 N -0.66 -11.34 5.21 -14.07 -0.07 -11.41 16 14 C 0.70 11.93 8.38 -86.92 -0.73 11.20 16 15 O -0.56 -12.02 12.99 5.30 0.07 -11.95 16 16 N -0.73 -8.48 5.14 -58.61 -0.30 -8.78 16 17 C 0.14 1.45 3.22 -67.86 -0.22 1.23 16 18 H 0.12 1.51 7.67 -51.93 -0.40 1.12 16 19 C -0.14 -0.72 6.79 -25.01 -0.17 -0.89 16 20 C 0.10 0.50 7.35 -3.12 -0.02 0.48 16 21 N -0.61 -5.51 3.15 -163.92 -0.52 -6.03 16 22 C 0.13 1.11 4.62 -67.12 -0.31 0.80 16 23 C -0.16 -1.65 7.46 -25.92 -0.19 -1.85 16 24 C -0.14 -1.19 8.08 -25.91 -0.21 -1.40 16 25 C -0.15 -1.30 7.61 -25.92 -0.20 -1.50 16 26 C 0.51 6.53 7.06 -10.86 -0.08 6.45 16 27 O -0.50 -8.83 14.61 5.56 0.08 -8.75 16 28 C -0.01 -0.13 6.30 -39.72 -0.25 -0.38 16 29 Cl -0.12 -1.94 27.70 -51.86 -1.44 -3.37 16 30 C -0.19 -4.35 9.50 -39.23 -0.37 -4.72 16 31 H 0.29 6.95 8.30 -40.82 -0.34 6.61 16 32 H 0.11 2.66 4.19 -52.49 -0.22 2.44 16 33 H 0.14 3.43 5.50 -52.48 -0.29 3.14 16 34 H 0.40 5.52 7.66 -40.82 -0.31 5.21 16 35 H 0.40 3.17 8.60 -40.82 -0.35 2.82 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 0.33 8.04 -51.93 -0.42 -0.09 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.11 1.59 5.58 -51.93 -0.29 1.30 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 1.01 7.35 -51.93 -0.38 0.63 16 47 H 0.12 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 390.19 15.07 5.88 5.88 Total: -1.00 -33.10 390.19 -10.66 -43.76 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -6.08 Total: 10.54 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -4.92 Total: -6.41 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.12 Total: -46.89 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.15 Total: -20.70 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.14 Total: 17.20 kcal Atomic # 17 Polarization: -1.94 SS G_CDS: -1.44 Total: -3.37 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.10 -10.66 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952885651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.131 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds