Wall clock time and date at job start Tue Mar 31 2020 05:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86800 * 119.99932 * 2 1 4 4 H 1.48500 * 109.47276 * 275.26941 * 3 2 1 5 5 H 1.48505 * 109.47386 * 35.27272 * 3 2 1 6 6 H 1.48505 * 109.47199 * 155.26897 * 3 2 1 7 7 C 1.39882 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00038 * 347.24533 * 7 2 1 9 9 C 1.41153 * 120.00251 * 167.25115 * 7 2 1 10 10 C 1.40891 * 120.15220 * 331.10183 * 9 7 2 11 11 C 1.36383 * 119.84584 * 179.97438 * 10 9 7 12 12 C 1.39459 * 120.17907 * 359.97438 * 11 10 9 13 13 N 1.39280 * 119.83919 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99632 * 338.69650 * 13 12 11 15 15 O 1.21571 * 120.00242 * 354.44388 * 14 13 12 16 16 N 1.34774 * 119.99304 * 174.44981 * 14 13 12 17 17 C 1.46504 * 119.99617 * 179.97438 * 16 14 13 18 18 H 1.09003 * 110.53695 * 323.83815 * 17 16 14 19 19 C 1.54788 * 110.61666 * 201.21148 * 17 16 14 20 20 C 1.54484 * 101.69020 * 266.39848 * 19 17 16 21 21 N 1.46758 * 105.47228 * 334.39289 * 20 19 17 22 22 C 1.46507 * 124.34544 * 196.99963 * 21 20 19 23 23 C 1.53780 * 113.61050 * 217.49581 * 22 21 20 24 24 C 1.53787 * 87.08046 * 220.01724 * 23 22 21 25 25 C 1.53780 * 113.61478 * 119.99757 * 22 21 20 26 26 C 1.34418 * 111.30472 * 17.01340 * 21 20 19 27 27 O 1.21278 * 124.93992 * 179.55744 * 26 21 20 28 28 C 1.39580 * 120.32350 * 0.25830 * 12 11 10 29 29 Cl 1.73600 * 119.92827 * 179.74725 * 28 12 11 30 30 C 1.36473 * 120.14645 * 359.48210 * 28 12 11 31 31 H 0.97003 * 119.99687 * 359.97438 * 1 2 3 32 32 H 1.08001 * 120.08219 * 0.02562 * 10 9 7 33 33 H 1.08004 * 119.90576 * 180.02562 * 11 10 9 34 34 H 0.97002 * 119.99966 * 158.69166 * 13 12 11 35 35 H 0.96995 * 120.00759 * 359.97438 * 16 14 13 36 36 H 1.08994 * 111.17337 * 148.23139 * 19 17 16 37 37 H 1.09003 * 110.86573 * 24.43312 * 19 17 16 38 38 H 1.08994 * 110.24072 * 215.38839 * 20 19 17 39 39 H 1.09004 * 110.24108 * 93.38925 * 20 19 17 40 40 H 1.08999 * 112.84773 * 348.79465 * 22 21 20 41 41 H 1.08999 * 113.61441 * 334.55991 * 23 22 21 42 42 H 1.08993 * 113.61748 * 105.46868 * 23 22 21 43 43 H 1.08996 * 113.61228 * 270.88829 * 24 23 22 44 44 H 1.08993 * 113.61733 * 139.98026 * 24 23 22 45 45 H 1.08999 * 113.60811 * 254.52408 * 25 22 21 46 46 H 1.08995 * 113.61626 * 25.34423 * 25 22 21 47 47 H 1.07998 * 120.09479 * 180.23707 * 30 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3790 2.1107 -1.3941 5 1 1.5004 2.6180 0.8085 6 1 3.5916 1.4106 0.5857 7 6 2.0083 -1.2114 0.0005 8 1 1.4883 -2.1351 0.2074 9 6 3.3937 -1.2266 -0.2692 10 6 3.9644 -0.2395 -1.0968 11 6 5.3039 -0.2599 -1.3529 12 6 6.1088 -1.2542 -0.7975 13 7 7.4757 -1.2685 -1.0641 14 6 7.9569 -0.6332 -2.1510 15 8 7.1909 -0.1341 -2.9522 16 7 9.2875 -0.5513 -2.3495 17 6 9.8106 0.1388 -3.5312 18 1 9.1635 -0.0320 -4.3915 19 6 11.2541 -0.3271 -3.8399 20 6 12.0921 0.7357 -3.0952 21 7 11.2379 1.9269 -3.0218 22 6 11.7253 3.2765 -2.7263 23 6 10.7658 4.0999 -1.8510 24 6 11.1137 5.3050 -2.7408 25 6 11.4474 4.2911 -3.8479 26 6 9.9510 1.6204 -3.2602 27 8 9.0351 2.4153 -3.2537 28 6 5.5502 -2.2384 0.0195 29 17 6.5607 -3.4751 0.7002 30 6 4.2123 -2.2276 0.2888 31 1 -0.4850 0.8401 0.0004 32 1 3.3429 0.5320 -1.5268 33 1 5.7425 0.4966 -1.9868 34 1 8.0814 -1.7357 -0.4676 35 1 9.8987 -0.9492 -1.7101 36 1 11.4552 -0.3022 -4.9109 37 1 11.4361 -1.3222 -3.4339 38 1 13.0017 0.9575 -3.6531 39 1 12.3392 0.3864 -2.0926 40 1 12.7568 3.2864 -2.3742 41 1 9.7250 3.7856 -1.9291 42 1 11.1000 4.2081 -0.8192 43 1 11.9778 5.8704 -2.3918 44 1 10.2575 5.9384 -2.9724 45 1 12.3320 4.5536 -4.4282 46 1 10.5939 4.0283 -4.4728 47 1 3.7817 -2.9874 0.9241 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000952885651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:08 Heat of formation + Delta-G solvation = -29.688559 kcal Electronic energy + Delta-G solvation = -32179.631040 eV Core-core repulsion = 27774.320032 eV Total energy + Delta-G solvation = -4405.311008 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 377.129 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.21763 -41.35285 -39.70199 -38.77103 -37.58461 -37.42634 -36.20985 -35.35537 -34.90133 -31.94062 -31.63693 -30.91316 -28.22383 -26.75280 -26.62936 -25.93214 -23.88642 -23.44697 -22.71722 -21.98077 -21.47596 -19.91300 -19.76224 -19.45002 -18.82082 -17.92323 -17.63138 -17.08459 -16.75534 -16.51441 -16.21303 -16.08347 -15.82197 -15.54216 -15.28669 -15.04863 -14.72214 -14.68291 -14.53896 -14.36091 -14.28745 -14.24718 -13.69935 -13.47212 -13.43069 -13.12495 -12.91612 -12.74739 -12.41523 -12.40346 -12.36799 -12.12240 -12.06740 -11.84340 -11.69068 -11.60307 -11.50740 -11.47540 -11.12924 -11.04152 -10.78937 -9.99802 -9.62202 -9.58123 -8.97978 -8.93419 -6.49323 0.45719 0.62907 1.10428 1.20827 1.24186 1.34115 1.42398 1.84800 1.93096 2.06038 2.12001 2.54316 3.20035 3.32272 3.36914 3.41578 3.62461 3.67746 3.84311 3.91941 4.00070 4.09328 4.18770 4.32839 4.47913 4.56454 4.70380 4.70720 4.71888 4.75985 4.82868 4.91134 4.94568 4.96259 4.97859 5.05314 5.08912 5.11582 5.28751 5.31689 5.35927 5.39563 5.67522 5.76630 5.80917 5.92121 6.01748 6.17609 6.25652 6.55335 6.72883 6.96081 7.17097 7.49229 8.11769 Molecular weight = 377.13amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.002684 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.712071 B =10430.977053 C =12439.128971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.053 3.947 3 Si 0.956 3.044 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.463 4.463 8 H 0.071 0.929 9 C 0.073 3.927 10 C -0.228 4.228 11 C -0.086 4.086 12 C 0.054 3.946 13 N -0.654 5.654 14 C 0.694 3.306 15 O -0.604 6.604 16 N -0.707 5.707 17 C 0.129 3.871 18 H 0.095 0.905 19 C -0.122 4.122 20 C 0.094 3.906 21 N -0.604 5.604 22 C 0.138 3.862 23 C -0.172 4.172 24 C -0.133 4.133 25 C -0.148 4.148 26 C 0.490 3.510 27 O -0.561 6.561 28 C -0.009 4.009 29 Cl -0.066 7.066 30 C -0.187 4.187 31 H 0.295 0.705 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.415 0.585 35 H 0.419 0.581 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.153 0.847 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.051 0.949 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.621 1.579 -4.066 33.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.162 4.162 3 Si 0.782 3.218 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.493 4.493 8 H 0.089 0.911 9 C 0.070 3.930 10 C -0.248 4.248 11 C -0.107 4.107 12 C -0.042 4.042 13 N -0.302 5.302 14 C 0.394 3.606 15 O -0.482 6.482 16 N -0.366 5.366 17 C 0.019 3.981 18 H 0.113 0.887 19 C -0.159 4.159 20 C -0.027 4.027 21 N -0.337 5.337 22 C 0.035 3.965 23 C -0.210 4.210 24 C -0.170 4.170 25 C -0.186 4.186 26 C 0.276 3.724 27 O -0.438 6.438 28 C -0.039 4.039 29 Cl -0.038 7.038 30 C -0.207 4.207 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.146 0.854 34 H 0.253 0.747 35 H 0.257 0.743 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.170 0.830 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.069 0.931 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 32.373 2.486 -4.695 32.806 hybrid contribution -0.461 0.370 0.508 0.780 sum 31.912 2.856 -4.187 32.311 Atomic orbital electron populations 1.69680 1.08690 1.31461 1.36937 1.26647 0.95360 1.03592 0.90617 0.85637 0.79868 0.77452 0.78892 1.19857 1.20085 1.17479 1.19409 0.92071 0.95348 1.42455 0.91088 1.17741 0.93206 0.91886 0.90209 1.20777 0.95373 1.03505 1.05111 1.20815 0.93198 0.97485 0.99176 1.16649 0.83358 0.98054 1.06118 1.41844 1.05947 1.56062 1.26349 1.16135 0.83458 0.79531 0.81455 1.90891 1.57166 1.52990 1.47169 1.44549 1.03938 1.60399 1.27703 1.21572 0.99220 0.88309 0.89000 0.88705 1.23044 0.87730 1.01097 1.04065 1.22527 0.94440 0.82989 1.02750 1.48441 1.07607 1.09331 1.68356 1.22809 0.99485 0.78270 0.95906 1.23441 1.00753 0.97523 0.99323 1.22681 1.02081 0.95820 0.96468 1.23260 1.01786 0.96525 0.97049 1.21794 0.82810 0.91706 0.76098 1.90700 1.44665 1.56569 1.51885 1.20032 0.91412 0.91249 1.01164 1.98270 1.68674 1.52750 1.84078 1.20624 0.90828 1.03536 1.05712 0.89403 0.88664 0.85427 0.74690 0.74274 0.86575 0.85200 0.86755 0.88772 0.82959 0.91939 0.90470 0.87097 0.92818 0.88588 0.93051 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.76 13.93 21.82 0.30 -46.45 16 2 C 0.05 2.93 5.47 85.23 0.47 3.40 16 3 Si 0.96 45.75 24.36 68.60 1.67 47.42 16 4 H -0.27 -13.02 6.77 99.48 0.67 -12.35 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 6 H -0.25 -12.31 6.45 99.48 0.64 -11.66 16 7 C -0.46 -26.07 9.60 23.38 0.22 -25.84 16 8 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 9 C 0.07 3.82 5.19 -21.28 -0.11 3.71 16 10 C -0.23 -11.86 6.84 22.49 0.15 -11.71 16 11 C -0.09 -4.22 8.68 22.13 0.19 -4.03 16 12 C 0.05 2.27 6.50 38.58 0.25 2.52 16 13 N -0.65 -21.23 5.21 -316.71 -1.65 -22.89 16 14 C 0.69 23.22 8.38 179.06 1.50 24.72 16 15 O -0.60 -26.83 12.99 -3.94 -0.05 -26.88 16 16 N -0.71 -14.82 5.14 -457.60 -2.35 -17.17 16 17 C 0.13 2.54 3.22 45.04 0.15 2.68 16 18 H 0.09 2.41 7.67 -2.39 -0.02 2.39 16 19 C -0.12 -0.68 6.79 31.71 0.22 -0.46 16 20 C 0.09 0.43 7.35 86.83 0.64 1.07 16 21 N -0.60 -9.30 3.15 -791.13 -2.49 -11.79 16 22 C 0.14 1.93 4.62 45.52 0.21 2.14 16 23 C -0.17 -3.54 7.46 31.12 0.23 -3.31 16 24 C -0.13 -2.20 8.08 31.12 0.25 -1.94 16 25 C -0.15 -2.40 7.61 31.12 0.24 -2.16 16 26 C 0.49 12.64 7.06 87.90 0.62 13.26 16 27 O -0.56 -21.53 14.61 -3.02 -0.04 -21.58 16 28 C -0.01 -0.38 6.30 22.18 0.14 -0.24 16 29 Cl -0.07 -2.01 27.70 -2.72 -0.08 -2.08 16 30 C -0.19 -8.55 9.50 22.49 0.21 -8.34 16 31 H 0.30 14.84 8.30 -92.71 -0.77 14.07 16 32 H 0.10 5.07 4.19 -2.91 -0.01 5.05 16 33 H 0.13 6.61 5.50 -2.91 -0.02 6.59 16 34 H 0.42 10.17 7.66 -92.71 -0.71 9.46 16 35 H 0.42 4.97 8.60 -92.71 -0.80 4.17 16 36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.13 0.03 8.04 -2.39 -0.02 0.01 16 38 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 40 H 0.15 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 1.96 5.58 -2.39 -0.01 1.94 16 42 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.05 1.24 7.35 -2.39 -0.02 1.22 16 47 H 0.13 5.46 8.06 -2.91 -0.02 5.44 16 Total: -1.00 -81.55 390.19 0.34 -81.21 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -0.55 Total: 24.73 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 5.58 Total: -4.53 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -6.18 Total: -98.30 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -0.10 Total: -48.46 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 1.67 Total: 47.42 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.08 Total: -2.08 kcal Total: -81.55 0.34 -81.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952885651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.522 kcal (2) G-P(sol) polarization free energy of solvation -81.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds