Wall clock time and date at job start Tue Mar 31 2020 05:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46509 * 109.47284 * 327.54092 * 3 2 1 5 5 C 1.36936 * 119.99650 * 274.86059 * 4 3 2 6 6 H 1.07998 * 119.99639 * 147.01261 * 5 4 3 7 7 C 1.38802 * 120.00096 * 327.00495 * 5 4 3 8 8 N 1.31623 * 119.99936 * 156.22375 * 7 5 4 9 9 Si 1.86807 * 120.00341 * 336.22381 * 7 5 4 10 10 H 1.48499 * 109.47029 * 95.52685 * 9 7 5 11 11 H 1.48503 * 109.47182 * 215.52693 * 9 7 5 12 12 H 1.48505 * 109.46731 * 335.52713 * 9 7 5 13 13 S 1.65595 * 119.99797 * 94.85911 * 4 3 2 14 14 O 1.42104 * 106.40782 * 336.45987 * 13 4 3 15 15 O 1.42103 * 106.40308 * 203.54087 * 13 4 3 16 16 C 1.76198 * 107.22100 * 90.00317 * 13 4 3 17 17 N 1.31957 * 126.02349 * 329.97046 * 16 13 4 18 18 C 1.32591 * 109.86852 * 180.02562 * 17 16 13 19 19 C 1.41810 * 125.57188 * 179.97438 * 18 17 16 20 20 O 1.21697 * 119.99559 * 180.02562 * 19 18 17 21 21 O 1.34990 * 120.00325 * 0.02562 * 19 18 17 22 22 C 1.42898 * 117.00044 * 180.02562 * 21 19 18 23 23 C 1.52995 * 109.46960 * 180.02562 * 22 21 19 24 24 N 1.37100 * 108.84950 * 0.22624 * 18 17 16 25 25 C 1.36142 * 133.01769 * 180.35730 * 24 18 17 26 26 C 1.35194 * 120.60382 * 179.65813 * 25 24 18 27 27 C 1.40299 * 120.38507 * 359.79811 * 26 25 24 28 28 C 1.36361 * 119.57493 * 359.97340 * 27 26 25 29 29 C 1.37204 * 106.73826 * 359.64191 * 24 18 17 30 30 H 4.40649 * 5.51426 * 179.97438 * 4 1 2 31 31 H 1.08997 * 109.47396 * 207.53877 * 3 2 1 32 32 H 1.09006 * 109.47354 * 87.53939 * 3 2 1 33 33 H 0.97002 * 120.00270 * 179.97438 * 8 7 5 34 34 H 1.08996 * 109.47446 * 299.99989 * 22 21 19 35 35 H 1.08997 * 109.47139 * 60.00233 * 22 21 19 36 36 H 1.08998 * 109.47641 * 299.99851 * 23 22 21 37 37 H 1.08999 * 109.47512 * 59.99925 * 23 22 21 38 38 H 1.09007 * 109.47344 * 179.97438 * 23 22 21 39 39 H 1.08008 * 119.69759 * 359.43608 * 25 24 18 40 40 H 1.08000 * 119.80848 * 179.77206 * 26 25 24 41 41 H 1.07998 * 120.21041 * 179.97438 * 27 26 25 42 42 H 1.07994 * 120.39977 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.1646 0.7413 5 6 3.2683 -1.1032 2.1028 6 1 3.1008 -1.9859 2.7021 7 6 3.6190 0.0934 2.7125 8 7 3.3061 0.3061 3.9732 9 14 4.5351 1.4020 1.7440 10 1 3.5646 2.3858 1.2006 11 1 5.4967 2.0967 2.6373 12 1 5.2723 0.7635 0.6240 13 16 3.5260 -2.5558 -0.0672 14 8 2.7983 -2.5290 -1.2875 15 8 3.4205 -3.6121 0.8775 16 6 5.2300 -2.4452 -0.5016 17 7 5.8961 -1.3343 -0.7538 18 6 7.1568 -1.6216 -1.0472 19 6 8.1638 -0.6775 -1.3724 20 8 9.2925 -1.0551 -1.6263 21 8 7.8704 0.6398 -1.4004 22 6 8.9330 1.5342 -1.7363 23 6 8.4139 2.9732 -1.7163 24 7 7.3262 -2.9809 -0.9903 25 6 8.4005 -3.7922 -1.1926 26 6 8.2851 -5.1328 -1.0607 27 6 7.0548 -5.7079 -0.7086 28 6 5.9724 -4.9057 -0.4987 29 6 6.1123 -3.5160 -0.6401 30 1 -1.0499 -0.0002 0.0003 31 1 3.0089 0.9120 0.4751 32 1 3.0093 -0.0433 -1.0268 33 1 3.5515 1.1421 4.3995 34 1 9.7395 1.4291 -1.0107 35 1 9.3070 1.2962 -2.7321 36 1 7.6073 3.0787 -2.4418 37 1 8.0402 3.2109 -0.7204 38 1 9.2246 3.6555 -1.9722 39 1 9.3529 -3.3613 -1.4644 40 1 9.1449 -5.7647 -1.2278 41 1 6.9657 -6.7792 -0.6044 42 1 5.0189 -5.3342 -0.2276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000952991990.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:40 Heat of formation + Delta-G solvation = 15.139328 kcal Electronic energy + Delta-G solvation = -33174.889203 eV Core-core repulsion = 28637.732690 eV Total energy + Delta-G solvation = -4537.156513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 377.092 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.03050 -40.40688 -37.67669 -36.85734 -36.45292 -35.89861 -34.59513 -33.55819 -32.68915 -32.00705 -31.51572 -31.08528 -28.96253 -26.75482 -25.17959 -24.14045 -23.97036 -22.92506 -22.80251 -21.18494 -18.68922 -18.46629 -18.17759 -17.77859 -17.05495 -17.02648 -16.71986 -16.47526 -16.23691 -15.99504 -15.68661 -15.60182 -15.41823 -14.60086 -14.20736 -14.10076 -13.73619 -13.58411 -13.19442 -12.92597 -12.88920 -12.62070 -12.58997 -12.27112 -12.10284 -12.01318 -11.70926 -11.20423 -11.12036 -11.02377 -10.94464 -10.82464 -10.81742 -10.74754 -10.63455 -10.59860 -10.29752 -10.04349 -9.66653 -9.51804 -9.47258 -9.02502 -8.39953 -7.85940 -6.75221 -4.15159 0.50874 0.55983 1.44943 1.83304 1.90725 3.00226 3.01835 3.10248 3.18876 3.25306 3.39717 3.43654 3.60645 3.98757 4.05543 4.22761 4.46419 4.49290 4.54713 4.64849 4.69567 4.80047 4.80327 4.85893 4.95034 5.11816 5.15680 5.38124 5.42945 5.60580 5.66479 5.71986 5.77000 5.86597 5.88708 5.96279 5.99755 6.11058 6.23757 6.34439 6.56209 6.77253 6.82184 7.31586 7.37745 7.76125 8.13808 8.34561 8.76291 8.81374 10.29330 Molecular weight = 377.09amu Principal moments of inertia in cm(-1) A = 0.007647 B = 0.005239 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3660.825626 B = 5343.757300 C = 7572.584371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.163 4.163 3 C 0.225 3.775 4 N -0.804 5.804 5 C -0.240 4.240 6 H 0.130 0.870 7 C 0.067 3.933 8 N -0.814 5.814 9 Si 0.852 3.148 10 H -0.266 1.266 11 H -0.286 1.286 12 H -0.215 1.215 13 S 2.546 3.454 14 O -0.988 6.988 15 O -0.967 6.967 16 C -0.505 4.505 17 N -0.284 5.284 18 C 0.058 3.942 19 C 0.573 3.427 20 O -0.527 6.527 21 O -0.323 6.323 22 C 0.062 3.938 23 C -0.153 4.153 24 N -0.313 5.313 25 C 0.060 3.940 26 C -0.132 4.132 27 C -0.094 4.094 28 C -0.086 4.086 29 C 0.114 3.886 30 H 0.214 0.786 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.284 0.716 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.180 0.820 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.466 -2.094 -9.120 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.165 4.165 3 C 0.100 3.900 4 N -0.627 5.627 5 C -0.391 4.391 6 H 0.147 0.853 7 C -0.150 4.150 8 N -0.450 5.450 9 Si 0.677 3.323 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.137 1.137 13 S 2.644 3.356 14 O -0.977 6.977 15 O -0.956 6.956 16 C -0.722 4.722 17 N -0.002 5.002 18 C -0.185 4.185 19 C 0.420 3.580 20 O -0.418 6.418 21 O -0.237 6.237 22 C -0.013 4.013 23 C -0.210 4.210 24 N 0.017 4.983 25 C -0.064 4.064 26 C -0.152 4.152 27 C -0.116 4.116 28 C -0.105 4.105 29 C -0.001 4.001 30 H 0.231 0.769 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.197 0.803 40 H 0.176 0.824 41 H 0.168 0.832 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 10.354 -1.932 -9.648 14.284 hybrid contribution 1.766 0.187 -0.285 1.799 sum 12.120 -1.746 -9.933 15.767 Atomic orbital electron populations 1.24645 0.95594 1.00807 1.02359 1.23393 0.94573 0.99800 0.98779 1.18231 0.84337 0.90615 0.96855 1.53958 1.64993 1.30392 1.13392 1.19480 1.40927 1.00271 0.78436 0.85307 1.25785 0.94772 0.98932 0.95528 1.69833 1.37526 1.25810 1.11815 0.87285 0.81028 0.81539 0.82437 1.19326 1.21235 1.13703 1.11989 0.73353 0.77373 0.72921 1.93388 1.69962 1.87293 1.47060 1.93379 1.85595 1.55660 1.60952 1.36328 1.27295 0.90049 1.18517 1.70111 0.99905 1.26937 1.03241 1.19851 0.94949 0.79975 1.23746 1.17379 0.84844 0.81848 0.73957 1.90853 1.22040 1.80643 1.48218 1.86310 1.41510 1.15596 1.80287 1.22734 0.88717 0.88819 1.01016 1.21822 1.02507 0.92610 1.04097 1.42503 1.09245 1.06912 1.39601 1.22151 0.91807 0.90995 1.01438 1.21056 0.99645 0.92947 1.01594 1.21310 0.91651 1.01275 0.97399 1.21008 1.02036 0.88675 0.98811 1.19721 0.84801 0.94750 1.00812 0.76941 0.89964 0.88278 0.90612 0.91335 0.91360 0.91136 0.91135 0.90161 0.80313 0.82445 0.83199 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -4.05 19.25 29.55 0.57 -3.48 16 2 C -0.16 -3.53 13.64 -37.12 -0.51 -4.03 16 3 C 0.22 4.97 4.79 -6.83 -0.03 4.94 16 4 N -0.80 -19.39 2.52 -62.77 -0.16 -19.55 16 5 C -0.24 -6.20 9.60 -15.06 -0.14 -6.34 16 6 H 0.13 3.55 7.52 -52.49 -0.39 3.16 16 7 C 0.07 1.70 5.32 -17.43 -0.09 1.61 16 8 N -0.81 -21.25 13.97 55.49 0.78 -20.47 16 9 Si 0.85 18.88 24.93 -169.99 -4.24 14.64 16 10 H -0.27 -5.62 6.68 56.52 0.38 -5.24 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.22 -4.72 6.41 56.52 0.36 -4.35 16 13 S 2.55 60.35 5.74 -107.50 -0.62 59.73 16 14 O -0.99 -24.49 16.99 -57.17 -0.97 -25.46 16 15 O -0.97 -23.99 16.18 -57.17 -0.92 -24.92 16 16 C -0.50 -11.08 7.18 -17.05 -0.12 -11.20 16 17 N -0.28 -6.19 10.44 -11.03 -0.12 -6.30 16 18 C 0.06 1.14 7.64 -155.65 -1.19 -0.05 16 19 C 0.57 10.22 7.73 32.10 0.25 10.47 16 20 O -0.53 -9.00 14.96 -19.42 -0.29 -9.29 16 21 O -0.32 -5.40 10.05 -41.29 -0.42 -5.82 16 22 C 0.06 0.75 6.10 37.15 0.23 0.98 16 23 C -0.15 -1.50 10.28 37.15 0.38 -1.12 16 24 N -0.31 -5.54 2.95 -60.23 -0.18 -5.72 16 25 C 0.06 0.80 10.47 -16.72 -0.18 0.62 16 26 C -0.13 -1.32 9.98 -39.89 -0.40 -1.72 16 27 C -0.09 -1.02 10.08 -39.48 -0.40 -1.42 16 28 C -0.09 -1.30 9.92 -39.45 -0.39 -1.70 16 29 C 0.11 2.18 6.70 -84.21 -0.56 1.61 16 30 H 0.21 2.96 7.80 -54.10 -0.42 2.54 16 31 H 0.08 1.79 2.58 -51.93 -0.13 1.66 16 32 H 0.10 2.02 7.62 -51.93 -0.40 1.62 16 33 H 0.28 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 35 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.18 2.09 6.71 -52.48 -0.35 1.73 16 40 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.17 2.43 7.55 -52.49 -0.40 2.03 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -33.80 382.51 -8.21 -42.01 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.25 Total: 6.21 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: -2.59 Total: -10.83 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.32 Total: -52.04 kcal Atomic # 8 Polarization: -62.88 SS G_CDS: -2.60 Total: -65.49 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.24 Total: 14.64 kcal Atomic # 16 Polarization: 60.35 SS G_CDS: -0.62 Total: 59.73 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.80 -8.21 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000952991990.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.149 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds