Wall clock time and date at job start Tue Mar 31 2020 05:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99885 * 2 1 4 4 H 1.48507 * 109.47184 * 270.00379 * 3 2 1 5 5 H 1.48506 * 109.47016 * 30.00265 * 3 2 1 6 6 H 1.48494 * 109.47228 * 150.00535 * 3 2 1 7 7 C 1.37877 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00483 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99323 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46747 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.46964 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54406 * 68.37865 * 11 10 9 13 13 O 1.42095 * 110.54337 * 291.62409 * 11 10 9 14 14 N 1.65600 * 104.44776 * 180.02562 * 11 10 9 15 15 C 1.46541 * 124.95532 * 269.97184 * 14 11 10 16 16 C 1.53751 * 105.18445 * 180.02562 * 15 14 11 17 17 C 1.51228 * 104.53667 * 0.02562 * 16 15 14 18 18 C 1.38170 * 130.98412 * 180.02562 * 17 16 15 19 19 C 1.38229 * 120.14875 * 180.02562 * 18 17 16 20 20 C 1.38297 * 119.83451 * 359.91669 * 19 18 17 21 21 C 1.37832 * 120.23283 * 0.10593 * 20 19 18 22 22 C 1.38592 * 108.53772 * 359.97438 * 17 16 15 23 23 H 0.96998 * 120.00038 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47338 * 60.00622 * 9 7 2 25 25 H 1.08992 * 109.47400 * 300.00068 * 9 7 2 26 26 H 1.08999 * 109.46801 * 60.00162 * 10 9 7 27 27 H 1.09005 * 109.46973 * 300.00328 * 10 9 7 28 28 H 1.08994 * 110.29754 * 61.11956 * 15 14 11 29 29 H 1.09001 * 110.30001 * 298.97021 * 15 14 11 30 30 H 1.08996 * 110.42683 * 241.24024 * 16 15 14 31 31 H 1.08992 * 110.42431 * 118.76286 * 16 15 14 32 32 H 1.07997 * 119.92289 * 359.97438 * 18 17 16 33 33 H 1.08000 * 120.08199 * 180.02562 * 19 18 17 34 34 H 1.08004 * 119.88320 * 180.02562 * 20 19 18 35 35 H 1.07997 * 119.86102 * 180.21246 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3384 -5.2330 0.0002 12 8 0.6640 -5.4200 -1.2365 13 8 0.6649 -5.4193 1.2375 14 7 2.5206 -6.3926 0.0009 15 6 3.1196 -6.9816 -1.1998 16 6 4.1522 -7.9948 -0.6792 17 6 4.0535 -7.8976 0.8267 18 6 4.7360 -8.5665 1.8247 19 6 4.4622 -8.2984 3.1528 20 6 3.5039 -7.3570 3.4813 21 6 2.8200 -6.6875 2.4894 22 6 3.0912 -6.9524 1.1451 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8721 -3.6042 -0.8905 28 1 3.6120 -6.2114 -1.7934 29 1 2.3581 -7.4881 -1.7928 30 1 5.1536 -7.7232 -1.0133 31 1 3.8990 -9.0012 -1.0123 32 1 5.4844 -9.3010 1.5664 33 1 4.9966 -8.8216 3.9320 34 1 3.2896 -7.1467 4.5188 35 1 2.0753 -5.9510 2.7528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020180185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:18 Heat of formation + Delta-G solvation = -46.539731 kcal Electronic energy + Delta-G solvation = -19792.350582 eV Core-core repulsion = 16689.177851 eV Total energy + Delta-G solvation = -3103.172731 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42386 -36.92689 -36.39020 -35.63931 -33.96668 -32.27834 -31.23965 -29.51289 -28.93990 -25.68149 -23.17897 -22.77485 -21.48888 -21.43648 -18.98413 -17.71891 -16.69655 -16.33781 -16.09055 -15.77943 -15.23996 -15.12252 -14.65883 -14.43355 -13.77785 -13.50809 -12.96876 -12.71255 -12.62941 -12.60138 -12.39791 -11.84994 -11.83318 -11.72917 -11.67025 -11.45501 -11.12296 -11.04224 -10.72377 -10.61798 -10.45473 -10.39403 -9.78184 -9.26350 -8.80696 -8.54717 -7.85809 -6.16830 -4.22950 0.48051 1.36164 1.43555 2.74195 3.23796 3.30172 3.33054 3.74069 4.12940 4.20509 4.22833 4.34206 4.65115 4.89984 4.95925 5.02622 5.15750 5.18351 5.32816 5.46552 5.51468 5.54094 5.62513 5.76048 5.77039 5.85843 6.15230 6.31083 6.37712 6.44597 6.56555 6.63902 7.05131 7.21997 7.27553 7.75917 8.11178 8.80245 9.42220 10.94158 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.004676 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.732798 B = 5987.177208 C = 6317.002417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.581 4.581 11 S 2.586 3.414 12 O -0.952 6.952 13 O -0.949 6.949 14 N -0.944 5.944 15 C 0.113 3.887 16 C -0.080 4.080 17 C -0.142 4.142 18 C -0.079 4.079 19 C -0.152 4.152 20 C -0.086 4.086 21 C -0.153 4.153 22 C 0.171 3.829 23 H 0.266 0.734 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.123 0.877 27 H 0.122 0.878 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.339 -16.571 1.782 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.716 4.716 11 S 2.687 3.313 12 O -0.942 6.942 13 O -0.939 6.939 14 N -0.765 5.765 15 C -0.012 4.012 16 C -0.118 4.118 17 C -0.146 4.146 18 C -0.098 4.098 19 C -0.171 4.171 20 C -0.105 4.105 21 C -0.174 4.174 22 C 0.073 3.927 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.141 0.859 27 H 0.140 0.860 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 9.108 -16.575 1.651 18.984 hybrid contribution 0.966 1.279 -0.061 1.604 sum 10.074 -15.296 1.590 18.384 Atomic orbital electron populations 1.69952 1.06133 1.27312 1.49389 1.25064 0.94981 0.99569 0.94773 0.86449 0.79721 0.82724 0.78284 1.20410 1.20935 1.19717 1.20975 0.93094 0.89583 1.52434 0.91964 1.19000 0.92626 0.90395 0.99032 1.30450 1.13721 1.16918 1.10472 1.06122 0.74375 0.76374 0.74447 1.93558 1.70412 1.85132 1.45119 1.93534 1.70716 1.84975 1.44695 1.56682 1.55717 1.53689 1.10386 1.21891 0.96193 0.96667 0.86409 1.21062 0.99678 0.99821 0.91263 1.20129 0.99415 0.99816 0.95288 1.20338 0.98854 0.98888 0.91726 1.20969 1.00102 1.00258 0.95799 1.20878 0.95219 0.95463 0.98928 1.21121 1.02937 1.03859 0.89488 1.18099 0.93397 0.94025 0.87138 0.92446 0.94729 0.94661 0.85869 0.85974 0.89930 0.89500 0.89338 0.89457 0.86076 0.85873 0.85385 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.04 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.58 -11.27 6.12 37.16 0.23 -11.05 16 11 S 2.59 48.12 5.56 -107.50 -0.60 47.52 16 12 O -0.95 -19.85 17.56 -57.54 -1.01 -20.86 16 13 O -0.95 -19.71 15.25 -57.54 -0.88 -20.59 16 14 N -0.94 -14.38 3.40 -58.12 -0.20 -14.57 16 15 C 0.11 1.33 7.08 -3.63 -0.03 1.30 16 16 C -0.08 -0.77 6.94 -27.23 -0.19 -0.96 16 17 C -0.14 -1.74 6.23 -104.26 -0.65 -2.39 16 18 C -0.08 -0.83 10.04 -39.61 -0.40 -1.23 16 19 C -0.15 -1.59 10.06 -39.56 -0.40 -1.98 16 20 C -0.09 -1.04 10.02 -39.71 -0.40 -1.43 16 21 C -0.15 -2.27 9.37 -39.19 -0.37 -2.64 16 22 C 0.17 2.54 6.59 -83.66 -0.55 1.99 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 24 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.12 2.19 8.14 -51.92 -0.42 1.77 16 27 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.15 2.36 6.11 -52.49 -0.32 2.03 16 LS Contribution 309.37 15.07 4.66 4.66 Total: -1.00 -34.00 309.37 -10.12 -44.12 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.51 Total: 0.10 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: -3.30 Total: -30.89 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.54 Total: -40.11 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.89 Total: -41.45 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: 48.12 SS G_CDS: -0.60 Total: 47.52 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.00 -10.12 -44.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.421 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds