Wall clock time and date at job start Tue Mar 31 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99885 * 2 1 4 4 H 1.48507 * 109.47184 * 270.00379 * 3 2 1 5 5 H 1.48506 * 109.47016 * 30.00265 * 3 2 1 6 6 H 1.48494 * 109.47228 * 150.00535 * 3 2 1 7 7 C 1.37877 * 120.00435 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00483 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99323 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46747 * 180.02562 * 9 7 2 11 11 S 1.81394 * 109.46964 * 179.97438 * 10 9 7 12 12 O 1.42105 * 110.54406 * 68.37865 * 11 10 9 13 13 O 1.42095 * 110.54337 * 291.62409 * 11 10 9 14 14 N 1.65600 * 104.44776 * 180.02562 * 11 10 9 15 15 C 1.46541 * 124.95532 * 269.97184 * 14 11 10 16 16 C 1.53751 * 105.18445 * 180.02562 * 15 14 11 17 17 C 1.51228 * 104.53667 * 0.02562 * 16 15 14 18 18 C 1.38170 * 130.98412 * 180.02562 * 17 16 15 19 19 C 1.38229 * 120.14875 * 180.02562 * 18 17 16 20 20 C 1.38297 * 119.83451 * 359.91669 * 19 18 17 21 21 C 1.37832 * 120.23283 * 0.10593 * 20 19 18 22 22 C 1.38592 * 108.53772 * 359.97438 * 17 16 15 23 23 H 0.96998 * 120.00038 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47338 * 60.00622 * 9 7 2 25 25 H 1.08992 * 109.47400 * 300.00068 * 9 7 2 26 26 H 1.08999 * 109.46801 * 60.00162 * 10 9 7 27 27 H 1.09005 * 109.46973 * 300.00328 * 10 9 7 28 28 H 1.08994 * 110.29754 * 61.11956 * 15 14 11 29 29 H 1.09001 * 110.30001 * 298.97021 * 15 14 11 30 30 H 1.08996 * 110.42683 * 241.24024 * 16 15 14 31 31 H 1.08992 * 110.42431 * 118.76286 * 16 15 14 32 32 H 1.07997 * 119.92289 * 359.97438 * 18 17 16 33 33 H 1.08000 * 120.08199 * 180.02562 * 19 18 17 34 34 H 1.08004 * 119.88320 * 180.02562 * 20 19 18 35 35 H 1.07997 * 119.86102 * 180.21246 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3384 -5.2330 0.0002 12 8 0.6640 -5.4200 -1.2365 13 8 0.6649 -5.4193 1.2375 14 7 2.5206 -6.3926 0.0009 15 6 3.1196 -6.9816 -1.1998 16 6 4.1522 -7.9948 -0.6792 17 6 4.0535 -7.8976 0.8267 18 6 4.7360 -8.5665 1.8247 19 6 4.4622 -8.2984 3.1528 20 6 3.5039 -7.3570 3.4813 21 6 2.8200 -6.6875 2.4894 22 6 3.0912 -6.9524 1.1451 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8895 27 1 2.8721 -3.6042 -0.8905 28 1 3.6120 -6.2114 -1.7934 29 1 2.3581 -7.4881 -1.7928 30 1 5.1536 -7.7232 -1.0133 31 1 3.8990 -9.0012 -1.0123 32 1 5.4844 -9.3010 1.5664 33 1 4.9966 -8.8216 3.9320 34 1 3.2896 -7.1467 4.5188 35 1 2.0753 -5.9510 2.7528 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020180185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:17 Heat of formation + Delta-G solvation = -69.151232 kcal Electronic energy + Delta-G solvation = -19793.331090 eV Core-core repulsion = 16689.177851 eV Total energy + Delta-G solvation = -3104.153239 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36754 -38.46770 -37.39024 -37.23080 -35.97438 -33.23965 -33.19341 -30.46791 -29.82705 -27.68010 -24.15941 -24.00541 -23.15913 -22.33081 -20.30366 -19.24072 -18.45473 -17.56058 -17.46898 -16.70240 -16.57166 -16.55486 -16.34823 -15.56390 -15.29034 -14.70095 -14.52058 -13.88352 -13.82200 -13.67466 -13.63527 -13.40596 -13.30595 -13.20716 -12.97780 -12.87403 -12.73419 -12.37865 -12.33937 -12.20447 -11.84030 -11.68381 -11.48788 -11.09987 -10.68465 -9.70522 -8.86044 -8.29859 -6.44827 -1.01404 0.46068 0.48677 1.39328 1.41295 1.42395 1.52691 2.35238 2.58937 2.87649 2.89503 3.03614 3.25583 3.69596 3.87584 3.95052 4.03271 4.18661 4.20516 4.36111 4.53784 4.60874 4.63964 4.67835 4.88043 5.03541 5.05576 5.17165 5.17632 5.25281 5.38360 5.53592 5.63108 5.63639 5.69299 5.99866 6.15061 6.67970 7.25776 8.82417 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023809 B = 0.004676 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.732798 B = 5987.177208 C = 6317.002417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.022 3.978 10 C -0.579 4.579 11 S 2.612 3.388 12 O -0.979 6.979 13 O -0.979 6.979 14 N -0.943 5.943 15 C 0.094 3.906 16 C -0.072 4.072 17 C -0.141 4.141 18 C -0.076 4.076 19 C -0.143 4.143 20 C -0.095 4.095 21 C -0.184 4.184 22 C 0.133 3.867 23 H 0.269 0.731 24 H 0.010 0.990 25 H 0.008 0.992 26 H 0.137 0.863 27 H 0.146 0.854 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.144 0.856 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.745 -18.045 1.701 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.580 4.580 8 H 0.093 0.907 9 C -0.017 4.017 10 C -0.712 4.712 11 S 2.713 3.287 12 O -0.969 6.969 13 O -0.969 6.969 14 N -0.767 5.767 15 C -0.029 4.029 16 C -0.109 4.109 17 C -0.146 4.146 18 C -0.094 4.094 19 C -0.162 4.162 20 C -0.114 4.114 21 C -0.206 4.206 22 C 0.036 3.964 23 H 0.078 0.922 24 H 0.028 0.972 25 H 0.026 0.974 26 H 0.155 0.845 27 H 0.164 0.836 28 H 0.118 0.882 29 H 0.106 0.894 30 H 0.134 0.866 31 H 0.128 0.872 32 H 0.176 0.824 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.523 -18.048 1.570 22.024 hybrid contribution -0.049 1.593 0.021 1.594 sum 12.474 -16.455 1.592 20.710 Atomic orbital electron populations 1.70097 1.08088 1.28486 1.50581 1.26117 0.95865 1.03885 0.94139 0.85285 0.78580 0.77470 0.78761 1.19376 1.20681 1.18261 1.21466 0.93942 0.90613 1.52023 0.90685 1.18839 0.93448 0.92767 0.96610 1.30319 1.12807 1.15715 1.12342 1.04979 0.74346 0.76252 0.73145 1.93512 1.71651 1.85611 1.46130 1.93494 1.72162 1.85401 1.45841 1.56215 1.55616 1.52715 1.12142 1.22336 0.97067 0.97955 0.85498 1.21162 1.00243 1.00252 0.89279 1.20536 0.98201 0.98644 0.97172 1.20812 0.98738 0.98692 0.91206 1.21416 0.98818 0.98917 0.97003 1.21155 0.95422 0.95643 0.99155 1.21165 1.03812 1.04833 0.90810 1.18392 0.95294 0.95986 0.86719 0.92249 0.97153 0.97360 0.84460 0.83625 0.88174 0.89388 0.86568 0.87163 0.82364 0.82481 0.83802 0.86425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 2 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 3 Si 0.98 43.30 29.54 68.60 2.03 45.33 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 8 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 9 C 0.02 1.19 4.98 29.85 0.15 1.34 16 10 C -0.58 -23.03 6.12 71.98 0.44 -22.59 16 11 S 2.61 101.15 5.56 -56.49 -0.31 100.84 16 12 O -0.98 -42.26 17.56 -127.65 -2.24 -44.50 16 13 O -0.98 -43.31 15.25 -127.65 -1.95 -45.25 16 14 N -0.94 -28.52 3.40 -337.78 -1.15 -29.67 16 15 C 0.09 2.06 7.08 86.62 0.61 2.67 16 16 C -0.07 -1.11 6.94 30.27 0.21 -0.90 16 17 C -0.14 -3.04 6.23 -19.63 -0.12 -3.16 16 18 C -0.08 -1.28 10.04 22.25 0.22 -1.06 16 19 C -0.14 -2.48 10.06 22.28 0.22 -2.25 16 20 C -0.10 -2.18 10.02 22.19 0.22 -1.96 16 21 C -0.18 -5.61 9.37 22.52 0.21 -5.40 16 22 C 0.13 3.87 6.59 38.34 0.25 4.12 16 23 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 24 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.01 0.46 8.14 -2.39 -0.02 0.45 16 26 H 0.14 5.00 8.14 -2.39 -0.02 4.98 16 27 H 0.15 5.00 8.14 -2.39 -0.02 4.98 16 28 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 33 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 34 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.12 4.13 6.11 -2.91 -0.02 4.11 16 Total: -1.00 -76.81 309.37 0.86 -75.94 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.08 Total: 12.79 kcal Atomic # 6 Polarization: -61.98 SS G_CDS: 3.12 Total: -58.86 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -0.86 Total: -86.27 kcal Atomic # 8 Polarization: -85.57 SS G_CDS: -4.19 Total: -89.76 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: 101.15 SS G_CDS: -0.31 Total: 100.84 kcal Total: -76.81 0.86 -75.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020180185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.790 kcal (2) G-P(sol) polarization free energy of solvation -76.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds