Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 120.00118 * 2 1 4 4 H 1.48499 * 109.47591 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46957 * 300.00798 * 3 2 1 6 6 H 1.48497 * 109.47025 * 60.00292 * 3 2 1 7 7 C 1.38810 * 120.00236 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00366 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.34870 * 116.99977 * 180.02562 * 9 7 2 11 11 O 1.21634 * 119.99878 * 359.97438 * 10 9 7 12 12 C 1.46632 * 119.99574 * 179.97438 * 10 9 7 13 13 C 1.36486 * 125.56429 * 179.97438 * 12 10 9 14 14 C 1.40620 * 107.63376 * 180.02562 * 13 12 10 15 15 C 1.40394 * 107.34664 * 359.97438 * 14 13 12 16 16 C 1.40146 * 119.96146 * 180.02562 * 15 14 13 17 17 C 1.35465 * 121.68596 * 359.97265 * 16 15 14 18 18 C 1.40991 * 121.16944 * 0.02809 * 17 16 15 19 19 C 1.40354 * 121.18052 * 179.97438 * 18 17 16 20 20 C 1.36299 * 119.70232 * 180.02562 * 19 18 17 21 21 C 1.39112 * 120.92799 * 359.97366 * 20 19 18 22 22 C 1.36485 * 120.82417 * 0.10801 * 21 20 19 23 23 C 1.39721 * 119.68813 * 359.88220 * 22 21 20 24 24 N 1.37287 * 107.34535 * 359.97438 * 15 14 13 25 25 H 0.97000 * 125.59341 * 179.97438 * 24 15 14 26 26 H 0.97000 * 120.00351 * 359.97438 * 1 2 3 27 27 H 1.07994 * 126.18619 * 0.02562 * 13 12 10 28 28 H 1.07998 * 119.16157 * 179.97438 * 16 15 14 29 29 H 1.08004 * 119.41620 * 179.74437 * 17 16 15 30 30 H 1.08004 * 120.14640 * 0.02562 * 19 18 17 31 31 H 1.07996 * 119.53597 * 180.02562 * 20 19 18 32 32 H 1.07996 * 119.58696 * 180.02562 * 21 20 19 33 33 H 1.07998 * 120.15743 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3465 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8895 2.3964 1.2125 7 6 2.0082 -1.2021 -0.0005 8 1 3.0883 -1.2021 -0.0010 9 8 1.3342 -2.3698 -0.0005 10 6 2.0688 -3.5008 -0.0005 11 8 3.2834 -3.4371 -0.0010 12 6 1.4030 -4.8073 0.0000 13 6 2.0318 -6.0187 -0.0004 14 6 1.0387 -7.0142 -0.0002 15 6 -0.2057 -6.3641 0.0010 16 6 -1.3883 -7.1161 0.0020 17 6 -1.3701 -8.4706 0.0013 18 6 -0.1541 -9.1841 0.0001 19 6 -0.1350 -10.5875 0.0000 20 6 1.0579 -11.2468 -0.0006 21 6 2.2609 -10.5481 -0.0016 22 6 2.2770 -9.1833 0.0002 23 6 1.0715 -8.4770 0.0006 24 7 0.0384 -5.0131 0.0020 25 1 -0.6374 -4.3173 0.0026 26 1 -0.4851 0.8400 0.0004 27 1 3.0992 -6.1830 -0.0008 28 1 -2.3384 -6.6027 0.0033 29 1 -2.3037 -9.0136 0.0063 30 1 -1.0615 -11.1426 0.0003 31 1 1.0695 -12.3267 -0.0012 32 1 3.1936 -11.0924 -0.0025 33 1 3.2171 -8.6518 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000031405091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = -9.138286 kcal Electronic energy + Delta-G solvation = -20079.471994 eV Core-core repulsion = 16842.477160 eV Total energy + Delta-G solvation = -3236.994834 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.084 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.31013 -39.28697 -38.52673 -35.43481 -35.02000 -32.45631 -32.22868 -30.71063 -29.04002 -28.36957 -25.75332 -23.65411 -22.99641 -22.27893 -20.72420 -19.72128 -18.29131 -18.02577 -17.66609 -16.38214 -15.86475 -15.19732 -15.00258 -14.89055 -14.41346 -14.15076 -14.02002 -13.50706 -13.26946 -13.17881 -12.81588 -12.74661 -12.52221 -12.01906 -11.73491 -11.37253 -11.06267 -10.80010 -10.71585 -10.54974 -10.49279 -10.02889 -9.78352 -9.37466 -8.89022 -8.74334 -7.87903 -7.38828 -6.59938 -4.22839 0.58075 1.17552 1.78980 2.54239 3.08034 3.10785 3.14532 3.18431 3.25165 3.79256 3.94266 4.25554 4.35801 4.67671 4.87917 4.93420 5.00706 5.08044 5.12032 5.26588 5.36932 5.40236 5.71261 5.71787 5.94245 6.02127 6.07460 6.27836 6.32286 6.46891 6.55074 6.62671 6.81229 6.90892 7.01658 7.20413 7.25746 7.67360 7.76691 8.50733 8.89232 9.62313 10.57683 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.040051 B = 0.003580 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.940194 B = 7818.764176 C = 8507.863181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.042 3.958 3 Si 0.947 3.053 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.375 4.375 8 H 0.101 0.899 9 O -0.211 6.211 10 C 0.453 3.547 11 O -0.536 6.536 12 C 0.067 3.933 13 C -0.125 4.125 14 C -0.112 4.112 15 C 0.079 3.921 16 C -0.092 4.092 17 C -0.101 4.101 18 C -0.066 4.066 19 C -0.101 4.101 20 C -0.132 4.132 21 C -0.118 4.118 22 C -0.107 4.107 23 C 0.005 3.995 24 N -0.539 5.539 25 H 0.429 0.571 26 H 0.272 0.728 27 H 0.153 0.847 28 H 0.122 0.878 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -17.474 0.007 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.451 4.451 8 H 0.119 0.881 9 O -0.118 6.118 10 C 0.300 3.700 11 O -0.432 6.432 12 C -0.045 4.045 13 C -0.149 4.149 14 C -0.117 4.117 15 C -0.034 4.034 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.067 4.067 19 C -0.119 4.119 20 C -0.150 4.150 21 C -0.136 4.136 22 C -0.125 4.125 23 C 0.004 3.996 24 N -0.138 5.138 25 H 0.269 0.731 26 H 0.082 0.918 27 H 0.170 0.830 28 H 0.140 0.860 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.127 -17.077 0.008 17.361 hybrid contribution -0.024 1.199 0.000 1.199 sum -3.151 -15.879 0.008 16.188 Atomic orbital electron populations 1.69961 1.06148 1.28069 1.45448 1.25416 0.95907 0.99073 0.95908 0.85539 0.79572 0.79509 0.78256 1.18689 1.20007 1.20003 1.21387 0.92707 0.79360 1.51608 0.88107 1.83893 1.39381 1.13463 1.75040 1.19577 0.85760 0.83937 0.80709 1.90716 1.14060 1.87016 1.51442 1.19590 0.81793 0.93316 1.09788 1.20523 0.99197 0.88581 1.06646 1.18758 0.92317 0.91613 1.09060 1.18255 0.95417 0.83053 1.06691 1.19709 0.95283 0.93587 1.02548 1.20514 0.96898 0.93026 1.01670 1.17881 0.92614 0.93317 1.02858 1.20923 0.98193 0.92749 1.00040 1.20734 0.92571 0.99715 1.02016 1.20834 0.98011 0.94213 1.00525 1.20863 0.97405 0.94181 1.00058 1.18284 0.92843 0.90194 0.98267 1.42145 1.07279 1.06037 1.58340 0.73109 0.91811 0.82976 0.86009 0.85380 0.85896 0.86414 0.86236 0.85577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.13 13.67 55.49 0.76 -23.37 16 2 C 0.04 1.14 5.50 -17.52 -0.10 1.04 16 3 Si 0.95 20.62 29.55 -169.99 -5.02 15.59 16 4 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.37 -10.78 9.65 30.94 0.30 -10.48 16 8 H 0.10 2.92 6.86 -52.48 -0.36 2.56 16 9 O -0.21 -5.87 9.75 -21.94 -0.21 -6.09 16 10 C 0.45 11.43 7.87 34.12 0.27 11.70 16 11 O -0.54 -14.54 16.10 -19.37 -0.31 -14.85 16 12 C 0.07 1.39 7.00 -82.33 -0.58 0.81 16 13 C -0.12 -2.31 10.43 -39.32 -0.41 -2.72 16 14 C -0.11 -1.89 6.20 -104.94 -0.65 -2.54 16 15 C 0.08 1.29 7.25 -83.90 -0.61 0.68 16 16 C -0.09 -1.20 9.91 -39.86 -0.40 -1.60 16 17 C -0.10 -1.20 9.67 -39.53 -0.38 -1.58 16 18 C -0.07 -0.87 5.74 -106.82 -0.61 -1.48 16 19 C -0.10 -1.08 9.77 -39.48 -0.39 -1.46 16 20 C -0.13 -1.33 9.95 -39.96 -0.40 -1.73 16 21 C -0.12 -1.27 9.96 -39.89 -0.40 -1.67 16 22 C -0.11 -1.38 9.74 -39.66 -0.39 -1.77 16 23 C 0.00 0.07 5.89 -104.86 -0.62 -0.55 16 24 N -0.54 -9.65 6.17 -7.31 -0.05 -9.70 16 25 H 0.43 7.22 8.96 -40.82 -0.37 6.85 16 26 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.15 2.62 8.06 -52.49 -0.42 2.20 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.50 8.04 -52.49 -0.42 1.08 16 LS Contribution 301.60 15.07 4.55 4.55 Total: -1.00 -32.32 301.60 -8.46 -40.78 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -2.82 Total: 6.43 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -5.35 Total: -13.33 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.71 Total: -33.07 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.53 Total: -20.94 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.32 -8.46 -40.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000031405091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.638 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds