Wall clock time and date at job start Tue Mar 31 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00251 * 2 1 4 4 H 1.48507 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46997 * 300.00052 * 3 2 1 6 6 H 1.48493 * 109.47516 * 60.00221 * 3 2 1 7 7 C 1.38803 * 119.99646 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00045 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99993 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99887 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.46929 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00053 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00131 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00064 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46937 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.46886 * 60.00211 * 15 14 13 17 17 O 1.42902 * 109.47015 * 300.00031 * 15 14 13 18 18 C 1.50700 * 109.47004 * 180.02562 * 15 14 13 19 19 C 1.38231 * 119.99825 * 84.86843 * 18 15 14 20 20 C 1.38243 * 120.00070 * 180.02562 * 19 18 15 21 21 C 1.38235 * 119.99602 * 0.07188 * 20 19 18 22 22 C 1.38230 * 120.00326 * 359.97438 * 21 20 19 23 23 C 1.38234 * 120.00292 * 264.99981 * 18 15 14 24 24 H 0.97005 * 119.99473 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47001 * 60.00044 * 10 9 7 26 26 H 1.08993 * 109.46948 * 299.99741 * 10 9 7 27 27 H 0.97000 * 119.99343 * 359.97438 * 13 11 10 28 28 H 1.08999 * 109.47160 * 60.00289 * 14 13 11 29 29 H 1.08998 * 109.47148 * 300.00167 * 14 13 11 30 30 H 0.96699 * 114.00101 * 299.99987 * 17 15 14 31 31 H 1.08001 * 120.00367 * 0.10906 * 19 18 15 32 32 H 1.08000 * 119.99728 * 180.34119 * 20 19 18 33 33 H 1.08000 * 119.99297 * 179.97438 * 21 20 19 34 34 H 1.08001 * 120.00350 * 179.97438 * 22 21 20 35 35 H 1.08007 * 119.99474 * 359.97438 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8915 -0.0005 11 6 1.9871 -5.3027 0.0001 12 8 0.7908 -5.5022 0.0000 13 7 2.8437 -6.3432 -0.0003 14 6 2.3299 -7.7152 0.0009 15 6 3.5019 -8.6987 -0.0005 16 1 4.1118 -8.5384 0.8885 17 8 4.2981 -8.4892 -1.1686 18 6 2.9733 -10.1100 0.0000 19 6 2.6292 -10.7196 -1.1919 20 6 2.1438 -12.0140 -1.1914 21 6 2.0012 -12.6981 0.0013 22 6 2.3444 -12.0882 1.1933 23 6 2.8300 -10.7939 1.1927 24 1 -0.4849 0.8401 0.0004 25 1 3.1242 -3.7314 0.8894 26 1 3.1242 -3.7314 -0.8905 27 1 3.8005 -6.1836 -0.0014 28 1 1.7204 -7.8756 -0.8884 29 1 1.7222 -7.8747 0.8915 30 1 3.8189 -8.6152 -1.9990 31 1 2.7408 -10.1852 -2.1238 32 1 1.8802 -12.4922 -2.1232 33 1 1.6216 -13.7092 0.0017 34 1 2.2326 -12.6225 2.1252 35 1 3.0973 -10.3169 2.1242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035609388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:25 Heat of formation + Delta-G solvation = -68.295233 kcal Electronic energy + Delta-G solvation = -18375.361161 eV Core-core repulsion = 15271.245041 eV Total energy + Delta-G solvation = -3104.116120 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.14695 -39.01754 -37.27717 -34.13357 -32.42177 -32.07303 -31.20158 -29.84626 -27.52948 -25.47762 -23.75961 -22.92621 -21.43177 -20.32528 -18.07167 -17.87631 -16.63908 -16.32285 -16.24875 -15.51604 -15.10851 -15.05079 -14.79679 -14.29798 -14.04189 -13.92016 -13.70285 -13.17095 -12.99323 -12.81316 -12.54654 -12.12400 -11.73351 -11.55405 -11.32093 -11.06350 -11.01073 -10.76981 -10.53370 -9.79842 -9.44048 -9.27295 -9.08941 -9.07234 -8.90988 -8.22397 -6.49299 -6.21156 -3.91498 0.94500 1.05248 3.00734 3.09774 3.22289 3.27858 3.32261 3.41845 3.70387 4.07914 4.21117 4.34968 4.47276 4.57374 4.68599 4.77103 4.87641 5.13232 5.14162 5.18713 5.21925 5.54493 5.56696 5.59620 5.69319 5.78176 5.91097 6.09058 6.16119 6.16517 6.19655 6.56869 6.62695 7.21507 7.60863 7.71925 8.36384 8.61239 9.24396 10.86370 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.049685 B = 0.002697 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.417687 B =10380.777257 C =10579.151520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.072 3.928 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.519 6.519 13 N -0.734 5.734 14 C 0.096 3.904 15 C 0.138 3.862 16 H 0.115 0.885 17 O -0.551 6.551 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.107 4.107 24 H 0.268 0.732 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.403 0.597 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.377 0.623 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.241 -23.862 -0.305 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.092 0.908 9 S 0.165 5.835 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.393 6.393 13 N -0.389 5.389 14 C -0.029 4.029 15 C 0.079 3.921 16 H 0.133 0.867 17 O -0.357 6.357 18 C -0.115 4.115 19 C -0.127 4.127 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.136 4.136 23 C -0.125 4.125 24 H 0.077 0.923 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.237 0.763 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.226 0.774 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.526 -23.964 0.135 24.837 hybrid contribution 1.881 1.129 -0.363 2.223 sum 8.407 -22.835 -0.228 24.335 Atomic orbital electron populations 1.70034 1.05958 1.27326 1.47007 1.25003 0.95041 0.99065 0.94563 0.86106 0.79591 0.81841 0.77883 1.19603 1.20576 1.20575 1.22911 0.94956 0.91612 1.58758 0.90849 1.85392 1.05014 0.96388 1.96719 1.23522 1.06526 0.95234 1.05022 1.20340 0.86481 0.86313 0.75111 1.90705 1.15404 1.85628 1.47607 1.45892 1.10305 1.04864 1.77875 1.21926 0.95860 0.81710 1.03423 1.21055 0.91830 0.89141 0.90085 0.86740 1.86623 1.40401 1.92821 1.15841 1.20389 1.00501 0.96494 0.94132 1.20900 0.98806 0.95506 0.97474 1.21140 0.99368 0.94671 0.98319 1.21210 0.99794 1.00044 0.92691 1.21168 0.99021 0.95127 0.98295 1.21028 0.99252 0.94769 0.97466 0.92252 0.89180 0.89130 0.76271 0.91217 0.90539 0.77440 0.86032 0.85835 0.85991 0.85817 0.85676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -15.31 9.50 30.94 0.29 -15.01 16 8 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 11 C 0.53 10.01 7.85 -10.98 -0.09 9.92 16 12 O -0.52 -11.90 15.86 5.56 0.09 -11.81 16 13 N -0.73 -9.90 5.45 -60.29 -0.33 -10.23 16 14 C 0.10 1.10 5.32 -4.04 -0.02 1.08 16 15 C 0.14 1.22 3.30 -27.88 -0.09 1.13 16 16 H 0.11 0.94 8.05 -51.93 -0.42 0.52 16 17 O -0.55 -5.00 12.88 -35.23 -0.45 -5.46 16 18 C -0.11 -1.00 5.00 -104.63 -0.52 -1.52 16 19 C -0.11 -0.89 9.33 -39.58 -0.37 -1.25 16 20 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 21 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 22 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 23 C -0.11 -0.89 9.68 -39.58 -0.38 -1.27 16 24 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 25 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 26 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 27 H 0.40 4.51 8.35 -40.82 -0.34 4.17 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.38 2.48 7.39 45.56 0.34 2.82 16 31 H 0.12 0.77 6.61 -52.49 -0.35 0.42 16 32 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 LS Contribution 321.94 15.07 4.85 4.85 Total: -1.00 -35.47 321.94 -8.29 -43.76 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.70 Total: 3.55 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -2.25 Total: -11.69 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.41 Total: -35.79 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.37 Total: -17.27 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.47 -8.29 -43.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035609388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.538 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds