Wall clock time and date at job start Tue Mar 31 2020 05:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 119.99724 * 2 1 4 4 H 1.48499 * 109.47302 * 269.99794 * 3 2 1 5 5 H 1.48504 * 109.47121 * 29.99923 * 3 2 1 6 6 H 1.48494 * 109.47289 * 149.99403 * 3 2 1 7 7 C 1.37876 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99463 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00231 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47068 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.47042 * 180.02562 * 10 9 7 12 12 C 1.35703 * 117.00299 * 179.97438 * 11 10 9 13 13 C 1.39041 * 119.90282 * 0.27439 * 12 11 10 14 14 C 1.37657 * 120.09100 * 180.28079 * 13 12 11 15 15 C 1.39817 * 119.90422 * 359.43995 * 14 13 12 16 16 C 1.47472 * 120.08972 * 180.25709 * 15 14 13 17 17 O 1.21512 * 119.99609 * 180.02562 * 16 15 14 18 18 O 1.34749 * 120.00349 * 0.02562 * 16 15 14 19 19 C 1.39774 * 119.81661 * 0.28430 * 15 14 13 20 20 C 1.37698 * 119.90376 * 359.97438 * 19 15 14 21 21 N 1.48018 * 119.95228 * 179.97438 * 20 19 15 22 22 O 1.21803 * 119.99914 * 359.97438 * 21 20 19 23 23 O 1.21799 * 120.00164 * 179.97438 * 21 20 19 24 24 H 0.96992 * 120.00289 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47024 * 59.99632 * 9 7 2 26 26 H 1.09000 * 109.46964 * 299.99315 * 9 7 2 27 27 H 1.09000 * 109.47249 * 60.00076 * 10 9 7 28 28 H 1.09000 * 109.47367 * 299.99358 * 10 9 7 29 29 H 1.07998 * 119.95290 * 359.97438 * 13 12 11 30 30 H 1.08002 * 120.04997 * 179.72513 * 14 13 12 31 31 H 0.96692 * 117.00272 * 179.97438 * 18 16 15 32 32 H 1.08000 * 120.04218 * 180.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0005 11 8 1.5311 -4.8995 -0.0001 12 6 2.2702 -6.0376 -0.0007 13 6 3.6585 -5.9625 0.0051 14 6 4.4121 -7.1145 -0.0014 15 6 3.7794 -8.3613 -0.0019 16 6 4.5827 -9.5980 -0.0030 17 8 4.0310 -10.6807 -0.0039 18 8 5.9283 -9.5275 -0.0031 19 6 2.3835 -8.4323 -0.0018 20 6 1.6372 -7.2750 -0.0008 21 7 0.1589 -7.3490 -0.0013 22 8 -0.3967 -8.4329 -0.0031 23 8 -0.5020 -6.3259 0.0001 24 1 -0.4850 0.8400 0.0004 25 1 0.6249 -2.5571 -0.8896 26 1 0.6243 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8905 28 1 2.8721 -3.6043 -0.8895 29 1 4.1464 -4.9990 0.0096 30 1 5.4905 -7.0553 -0.0014 31 1 6.4118 -10.3648 -0.0035 32 1 1.8909 -9.3935 -0.0018 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037295793.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:10 Heat of formation + Delta-G solvation = -112.456397 kcal Electronic energy + Delta-G solvation = -21055.810481 eV Core-core repulsion = 17371.193423 eV Total energy + Delta-G solvation = -3684.617058 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.082 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.04857 -40.82329 -39.97611 -37.78129 -36.47387 -36.20780 -33.59818 -32.41438 -31.28040 -30.12810 -26.51267 -25.76872 -24.44748 -22.99580 -21.78398 -20.85982 -19.61556 -18.62515 -18.25338 -17.90486 -17.35882 -16.97171 -16.31003 -16.07447 -15.97351 -15.83340 -14.90519 -14.60896 -14.19113 -13.80510 -13.36974 -13.00065 -12.41947 -12.21990 -12.12728 -11.83332 -11.31311 -11.28594 -11.09264 -11.04610 -10.83721 -10.82814 -10.73127 -10.24404 -9.97670 -9.87223 -9.44941 -8.86944 -8.54677 -6.19585 -4.26612 -0.12857 0.21898 1.29367 1.46828 2.07613 2.54691 2.93333 3.08107 3.20782 3.28124 3.29768 4.12238 4.23646 4.30901 4.40117 4.44630 4.66431 5.14219 5.16685 5.27576 5.46978 5.51912 5.62884 5.63539 5.85832 6.03146 6.33952 6.50083 7.00434 7.45213 7.47753 7.48412 7.78559 7.88375 8.07529 8.78497 9.38615 10.91423 Molecular weight = 281.08amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.003863 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.483213 B = 7246.925381 C = 8475.959580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.534 4.534 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.052 3.948 11 O -0.266 6.266 12 C 0.246 3.754 13 C -0.228 4.228 14 C 0.027 3.973 15 C -0.186 4.186 16 C 0.538 3.462 17 O -0.512 6.512 18 O -0.511 6.511 19 C 0.048 3.952 20 C -0.105 4.105 21 N 0.036 4.964 22 O -0.187 6.187 23 O -0.116 6.116 24 H 0.265 0.735 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.164 0.836 30 H 0.157 0.843 31 H 0.418 0.582 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.137 -15.696 0.003 19.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.021 4.021 11 O -0.174 6.174 12 C 0.192 3.808 13 C -0.247 4.247 14 C 0.009 3.991 15 C -0.189 4.189 16 C 0.383 3.617 17 O -0.401 6.401 18 O -0.323 6.323 19 C 0.029 3.971 20 C -0.190 4.190 21 N 0.555 4.445 22 O -0.394 6.394 23 O -0.341 6.341 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.182 0.818 30 H 0.175 0.825 31 H 0.277 0.723 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.084 -15.460 0.008 19.622 hybrid contribution 0.616 0.435 -0.013 0.755 sum 12.700 -15.025 -0.005 19.673 Atomic orbital electron populations 1.69972 1.06094 1.27236 1.48785 1.24986 0.94910 0.99419 0.94697 0.86472 0.79674 0.82871 0.78266 1.20445 1.20959 1.19775 1.20887 0.92954 0.89953 1.53372 0.92305 1.19169 0.93976 0.88201 0.99715 1.23850 0.97884 0.79735 1.00670 1.86540 1.36012 1.13091 1.81724 1.19252 0.90747 0.86711 0.84126 1.21488 0.91100 1.01511 1.10625 1.21617 1.01540 0.89974 0.85968 1.18579 0.91455 0.91905 1.16937 1.20337 0.80687 0.88532 0.72166 1.90939 1.72637 1.30170 1.46390 1.84521 1.19667 1.42207 1.85928 1.20816 0.92099 0.98084 0.86120 1.20295 0.81076 0.93494 1.24113 1.43205 1.02515 1.00750 0.98052 1.94512 1.72647 1.16772 1.55422 1.94699 1.63751 1.24357 1.51285 0.92481 0.94812 0.94795 0.91787 0.91800 0.81813 0.82508 0.72296 0.81327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.39 13.29 55.43 0.74 -24.65 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.53 -13.86 9.11 -34.44 -0.31 -14.17 16 8 H 0.06 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.03 0.64 5.34 -27.89 -0.15 0.49 16 10 C 0.05 0.94 4.67 37.15 0.17 1.11 16 11 O -0.27 -4.83 8.12 -40.99 -0.33 -5.16 16 12 C 0.25 3.61 6.68 -39.01 -0.26 3.35 16 13 C -0.23 -2.50 9.01 -39.50 -0.36 -2.86 16 14 C 0.03 0.24 9.61 -39.20 -0.38 -0.13 16 15 C -0.19 -1.91 5.87 -104.97 -0.62 -2.53 16 16 C 0.54 5.18 8.26 34.49 0.29 5.46 16 17 O -0.51 -6.40 17.13 -19.28 -0.33 -6.73 16 18 O -0.51 -3.13 12.67 -40.63 -0.51 -3.65 16 19 C 0.05 0.59 9.09 -39.20 -0.36 0.23 16 20 C -0.10 -1.56 6.86 -79.87 -0.55 -2.11 16 21 N 0.04 0.63 4.45 34.00 0.15 0.78 16 22 O -0.19 -3.23 18.44 -29.46 -0.54 -3.78 16 23 O -0.12 -2.32 17.23 -36.51 -0.63 -2.95 16 24 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 1.05 7.64 -51.93 -0.40 0.65 16 28 H 0.06 1.04 7.66 -51.93 -0.40 0.65 16 29 H 0.16 1.56 6.28 -52.49 -0.33 1.23 16 30 H 0.16 0.92 7.60 -52.49 -0.40 0.52 16 31 H 0.42 0.73 9.11 45.56 0.42 1.14 16 32 H 0.17 1.99 7.18 -52.49 -0.38 1.62 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -32.21 299.97 -6.45 -38.66 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: -1.87 Total: -2.76 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -2.62 Total: -9.54 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.89 Total: -23.87 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -2.35 Total: -22.27 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.21 -6.45 -38.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037295793.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.798 kcal (2) G-P(sol) polarization free energy of solvation -32.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds