Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86799 * 119.99986 * 2 1 4 4 H 1.48497 * 109.47257 * 239.99449 * 3 2 1 5 5 H 1.48505 * 109.47172 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47176 * 119.99825 * 3 2 1 7 7 C 1.38803 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99823 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99827 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99999 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47262 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99930 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00064 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99842 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.46908 * 180.02562 * 14 13 11 16 16 O 1.42902 * 109.47386 * 65.00040 * 15 14 13 17 17 C 1.35898 * 116.99694 * 180.02562 * 16 15 14 18 18 C 1.38735 * 120.05254 * 179.97438 * 17 16 15 19 19 C 1.38144 * 119.94607 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.05233 * 0.02562 * 19 18 17 21 21 C 1.38269 * 120.11595 * 359.95530 * 20 19 18 22 22 C 1.38142 * 120.04935 * 0.04230 * 21 20 19 23 23 H 0.96998 * 119.99779 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47354 * 59.99400 * 10 9 7 25 25 H 1.09008 * 109.46611 * 299.99899 * 10 9 7 26 26 H 0.97004 * 120.00117 * 359.97438 * 13 11 10 27 27 H 1.08997 * 109.46959 * 60.00151 * 14 13 11 28 28 H 1.09000 * 109.47126 * 299.99797 * 14 13 11 29 29 H 1.08999 * 109.46920 * 304.99793 * 15 14 13 30 30 H 1.08998 * 109.47220 * 185.00164 * 15 14 13 31 31 H 1.08002 * 120.02704 * 359.70561 * 18 17 16 32 32 H 1.08001 * 119.97447 * 179.97438 * 19 18 17 33 33 H 1.08000 * 119.94089 * 179.97438 * 20 19 18 34 34 H 1.07992 * 119.97577 * 180.02562 * 21 20 19 35 35 H 1.08005 * 120.02748 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8442 -6.3431 0.0022 14 6 2.3304 -7.7151 0.0024 15 6 3.5025 -8.6985 0.0036 16 8 4.2325 -8.5681 1.2251 17 6 5.3131 -9.3761 1.3872 18 6 6.0680 -9.3021 2.5489 19 6 7.1657 -10.1248 2.7116 20 6 7.5126 -11.0211 1.7177 21 6 6.7618 -11.0971 0.5591 22 6 5.6631 -10.2766 0.3917 23 1 -0.4850 0.8400 -0.0004 24 1 3.1238 -3.7309 0.8924 25 1 3.1251 -3.7317 -0.8876 26 1 3.8010 -6.1835 0.0025 27 1 1.7221 -7.8753 -0.8877 28 1 1.7215 -7.8750 0.8922 29 1 4.1602 -8.4809 -0.8378 30 1 3.1228 -9.7164 -0.0859 31 1 5.8001 -8.5987 3.3236 32 1 7.7539 -10.0672 3.6156 33 1 8.3714 -11.6632 1.8466 34 1 7.0346 -11.7983 -0.2156 35 1 5.0771 -10.3360 -0.5136 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041766229.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -53.701556 kcal Electronic energy + Delta-G solvation = -18156.050196 eV Core-core repulsion = 15052.566906 eV Total energy + Delta-G solvation = -3103.483291 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45995 -39.12291 -37.73300 -34.65200 -32.41497 -31.47929 -30.89077 -29.79114 -28.18645 -25.47719 -23.93173 -22.72878 -21.75754 -20.45508 -18.67409 -17.86461 -16.64973 -16.59395 -16.28730 -15.87795 -15.28393 -15.12642 -14.78977 -14.72291 -13.92359 -13.79063 -13.67975 -13.28349 -12.94878 -12.89235 -12.53708 -12.08648 -11.88901 -11.76600 -11.33720 -11.10556 -11.03185 -11.02526 -10.75485 -9.81328 -9.41829 -9.34164 -9.05230 -8.91813 -8.52857 -8.22759 -6.48604 -6.20177 -3.90732 1.00140 1.12195 2.81465 3.04006 3.10794 3.24718 3.28548 3.32278 3.46585 3.72451 4.21937 4.37527 4.52126 4.62746 4.71308 4.78345 4.89607 5.04921 5.11711 5.14828 5.17609 5.26742 5.49544 5.59527 5.67301 5.77982 5.91373 5.97647 6.07145 6.16386 6.20329 6.43439 6.56716 7.09637 7.60735 7.69355 8.36541 8.60512 9.24958 10.87221 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029655 B = 0.002717 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.956951 B =10303.031508 C =10974.948198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.736 5.736 14 C 0.124 3.876 15 C 0.048 3.952 16 O -0.310 6.310 17 C 0.132 3.868 18 C -0.152 4.152 19 C -0.081 4.081 20 C -0.162 4.162 21 C -0.081 4.081 22 C -0.211 4.211 23 H 0.269 0.731 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.401 0.599 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.626 -22.355 1.172 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.393 6.393 13 N -0.392 5.392 14 C 0.000 4.000 15 C -0.027 4.027 16 O -0.223 6.223 17 C 0.086 3.914 18 C -0.171 4.171 19 C -0.099 4.099 20 C -0.180 4.180 21 C -0.100 4.100 22 C -0.230 4.230 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.235 0.765 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.347 -22.438 1.293 25.643 hybrid contribution 2.481 1.150 -0.225 2.744 sum 14.827 -21.288 1.068 25.965 Atomic orbital electron populations 1.70009 1.05948 1.27554 1.46811 1.24994 0.95035 0.99023 0.94544 0.86220 0.79228 0.81225 0.78799 1.19955 1.20814 1.19930 1.22830 0.94887 0.91664 1.59020 0.90969 1.85379 1.04950 0.96308 1.96727 1.23526 1.06565 0.95291 1.04988 1.20312 0.86466 0.86306 0.75030 1.90702 1.15345 1.85620 1.47621 1.45947 1.10170 1.05100 1.77975 1.21323 0.94271 0.80675 1.03709 1.23150 0.93560 1.00341 0.85695 1.86161 1.38681 1.57920 1.39556 1.19061 0.87495 0.90377 0.94448 1.20525 0.96653 1.02835 0.97050 1.20999 0.95574 0.94469 0.98873 1.21077 1.01284 1.00957 0.94714 1.20957 0.94024 0.97620 0.97351 1.21290 1.01318 1.00262 1.00096 0.92135 0.89136 0.89221 0.76514 0.89296 0.90372 0.91130 0.90346 0.85043 0.85368 0.85995 0.85863 0.85443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.39 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 11 C 0.53 10.06 7.85 -10.99 -0.09 9.97 16 12 O -0.52 -11.82 15.86 5.56 0.09 -11.73 16 13 N -0.74 -10.03 5.50 -60.29 -0.33 -10.36 16 14 C 0.12 1.39 6.06 -4.04 -0.02 1.36 16 15 C 0.05 0.40 4.87 37.16 0.18 0.58 16 16 O -0.31 -3.29 10.08 -19.42 -0.20 -3.49 16 17 C 0.13 1.31 6.69 -39.22 -0.26 1.05 16 18 C -0.15 -1.43 9.99 -39.43 -0.39 -1.82 16 19 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 20 C -0.16 -1.19 10.04 -39.56 -0.40 -1.58 16 21 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 22 C -0.21 -1.77 9.04 -39.44 -0.36 -2.12 16 23 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 25 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 26 H 0.40 4.55 8.47 -40.82 -0.35 4.20 16 27 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.50 7.66 -51.93 -0.40 0.10 16 30 H 0.08 0.50 7.66 -51.93 -0.40 0.11 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 34 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.13 0.84 6.30 -52.48 -0.33 0.51 16 LS Contribution 322.89 15.07 4.87 4.87 Total: -1.00 -35.07 322.89 -8.19 -43.26 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -4.40 Total: 1.01 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -1.71 Total: -10.60 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.40 Total: -35.96 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.11 Total: -15.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.07 -8.19 -43.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041766229.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.438 kcal (2) G-P(sol) polarization free energy of solvation -35.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds