Wall clock time and date at job start Tue Mar 31 2020 05:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 119.99521 * 2 1 4 4 H 1.48505 * 109.46871 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47401 * 300.00234 * 3 2 1 6 6 H 1.48498 * 109.47406 * 60.00256 * 3 2 1 7 7 C 1.38788 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00460 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00333 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47269 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99767 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99804 * 180.02562 * 11 10 9 14 14 N 1.40091 * 119.99647 * 180.02562 * 13 11 10 15 15 C 1.34781 * 119.99647 * 179.97438 * 14 13 11 16 16 O 1.21506 * 120.00219 * 359.97438 * 15 14 13 17 17 C 1.48175 * 119.99968 * 179.97438 * 15 14 13 18 18 C 1.39302 * 119.72239 * 180.02562 * 17 15 14 19 19 C 1.38596 * 119.05902 * 180.02562 * 18 17 15 20 20 C 1.38630 * 118.48529 * 359.97438 * 19 18 17 21 21 C 1.38563 * 119.35180 * 0.28231 * 20 19 18 22 22 N 1.31523 * 120.90439 * 359.44093 * 21 20 19 23 23 H 0.97005 * 120.00231 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46680 * 59.99662 * 10 9 7 25 25 H 1.09001 * 109.47051 * 300.00643 * 10 9 7 26 26 H 0.97001 * 119.99816 * 0.02562 * 13 11 10 27 27 H 0.97001 * 120.00537 * 359.97438 * 14 13 11 28 28 H 1.07999 * 120.47509 * 0.02562 * 18 17 15 29 29 H 1.07991 * 120.75611 * 180.02562 * 19 18 17 30 30 H 1.08002 * 120.31909 * 179.97438 * 20 19 18 31 31 H 1.08000 * 119.54141 * 179.72806 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2019 -0.0005 8 1 3.0903 -1.2019 -0.0010 9 16 1.1294 -2.7279 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3026 0.0001 12 8 0.7913 -5.5022 0.0000 13 7 2.8444 -6.3430 0.0007 14 7 2.3532 -7.6550 0.0008 15 6 3.2100 -8.6954 0.0009 16 8 4.4085 -8.4954 0.0005 17 6 2.6905 -10.0830 0.0015 18 6 3.5813 -11.1540 0.0022 19 6 3.0803 -12.4463 0.0022 20 6 1.7053 -12.6223 0.0021 21 6 0.8782 -11.5107 -0.0039 22 7 1.3803 -10.2951 0.0014 23 1 -0.4851 0.8401 0.0004 24 1 3.1246 -3.7312 0.8894 25 1 3.1247 -3.7312 -0.8905 26 1 3.8012 -6.1833 0.0012 27 1 1.3964 -7.8147 0.0007 28 1 4.6471 -10.9799 0.0026 29 1 3.7460 -13.2966 0.0031 30 1 1.2829 -13.6163 0.0017 31 1 -0.1935 -11.6443 -0.0085 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000046018665.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:22 Heat of formation + Delta-G solvation = 1.189871 kcal Electronic energy + Delta-G solvation = -17967.239458 eV Core-core repulsion = 14762.596095 eV Total energy + Delta-G solvation = -3204.643363 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 281.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.00792 -39.78669 -38.54709 -35.30357 -33.22036 -32.46092 -32.15139 -31.27125 -28.63397 -25.54613 -24.93697 -23.90213 -21.56155 -21.20225 -18.64588 -17.94466 -17.59538 -16.93082 -16.29300 -16.02242 -15.78768 -15.09179 -14.93330 -14.82840 -14.50067 -14.15070 -13.88501 -13.65180 -13.39822 -12.66123 -12.43731 -12.35588 -11.19920 -11.07935 -11.05938 -10.84142 -10.73367 -10.44237 -10.04137 -9.86045 -9.71630 -9.67764 -9.10283 -8.33128 -8.30453 -6.55318 -6.25037 -3.96538 0.20752 0.76460 1.73627 2.31598 2.90859 3.15800 3.20983 3.29184 3.38355 3.47794 3.57124 4.09657 4.16572 4.36428 4.50706 4.53785 4.59720 4.91191 5.06262 5.10700 5.27630 5.49395 5.55514 5.63958 5.77606 6.05065 6.09926 6.61472 6.67394 7.28106 7.56560 7.58026 7.82385 8.32601 8.47217 9.20706 10.82403 Molecular weight = 281.06amu Principal moments of inertia in cm(-1) A = 0.055928 B = 0.002763 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.525366 B =10130.191248 C =10615.572437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.075 0.925 9 S -0.051 6.051 10 C -0.145 4.145 11 C 0.534 3.466 12 O -0.512 6.512 13 N -0.531 5.531 14 N -0.496 5.496 15 C 0.568 3.432 16 O -0.538 6.538 17 C 0.088 3.912 18 C -0.107 4.107 19 C -0.081 4.081 20 C -0.149 4.149 21 C 0.102 3.898 22 N -0.459 5.459 23 H 0.269 0.731 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.430 0.570 27 H 0.442 0.558 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.092 -24.886 -0.004 25.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.747 3.253 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.685 4.685 8 H 0.094 0.906 9 S 0.175 5.825 10 C -0.296 4.296 11 C 0.321 3.679 12 O -0.384 6.384 13 N -0.283 5.283 14 N -0.242 5.242 15 C 0.352 3.648 16 O -0.414 6.414 17 C -0.051 4.051 18 C -0.128 4.128 19 C -0.107 4.107 20 C -0.169 4.169 21 C -0.058 4.058 22 N -0.170 5.170 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.272 0.728 27 H 0.286 0.714 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.221 -24.178 -0.002 24.543 hybrid contribution 2.436 0.437 0.002 2.475 sum 6.657 -23.741 0.000 24.656 Atomic orbital electron populations 1.70022 1.05968 1.27467 1.46802 1.24999 0.95050 0.99098 0.94436 0.86087 0.79603 0.81723 0.77910 1.19550 1.20549 1.20545 1.22909 0.95060 0.91418 1.59066 0.90640 1.85454 1.04109 0.96186 1.96776 1.23488 1.07236 0.93080 1.05843 1.20731 0.86456 0.85287 0.75434 1.90739 1.14959 1.84916 1.47742 1.45240 1.10592 0.94013 1.78487 1.44658 1.11099 0.95508 1.72963 1.17886 0.85739 0.83145 0.77986 1.90805 1.14383 1.84781 1.51429 1.20770 0.89875 0.93073 1.01403 1.22108 1.02023 0.91951 0.96755 1.21662 0.95752 0.97157 0.96139 1.22445 0.94446 1.01034 0.98962 1.22868 1.01035 0.86795 0.95062 1.67587 1.13269 1.26164 1.10004 0.92161 0.88386 0.88377 0.72770 0.71356 0.83143 0.83802 0.83968 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.23 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -15.01 9.50 30.94 0.29 -14.72 16 8 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.05 -1.36 20.57 -107.50 -2.21 -3.57 16 10 C -0.14 -2.84 6.16 36.01 0.22 -2.62 16 11 C 0.53 9.97 7.96 -10.98 -0.09 9.89 16 12 O -0.51 -11.29 15.70 5.56 0.09 -11.20 16 13 N -0.53 -8.12 6.26 31.22 0.20 -7.92 16 14 N -0.50 -7.20 6.25 30.61 0.19 -7.01 16 15 C 0.57 7.72 7.93 -12.18 -0.10 7.63 16 16 O -0.54 -8.20 16.16 5.36 0.09 -8.11 16 17 C 0.09 0.99 6.75 -83.01 -0.56 0.43 16 18 C -0.11 -0.92 9.63 -39.05 -0.38 -1.30 16 19 C -0.08 -0.47 10.17 -39.30 -0.40 -0.87 16 20 C -0.15 -0.78 10.11 -39.32 -0.40 -1.18 16 21 C 0.10 0.74 11.18 -17.56 -0.20 0.55 16 22 N -0.46 -4.87 9.54 -9.80 -0.09 -4.96 16 23 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 25 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 26 H 0.43 5.74 8.00 -182.60 -1.46 4.28 16 27 H 0.44 6.48 7.33 -182.60 -1.34 5.14 16 28 H 0.15 1.19 7.64 -52.49 -0.40 0.79 16 29 H 0.14 0.41 8.06 -52.49 -0.42 -0.02 16 30 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 31 H 0.17 0.76 8.06 -52.49 -0.42 0.33 16 LS Contribution 303.01 15.07 4.57 4.57 Total: -1.00 -35.17 303.01 -8.02 -43.19 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -4.86 Total: 4.17 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -1.69 Total: -0.22 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: 1.03 Total: -45.02 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.17 Total: -19.31 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.36 SS G_CDS: -2.21 Total: -3.57 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.17 -8.02 -43.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000046018665.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.376 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds