Wall clock time and date at job start Tue Mar 31 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 S 1.76198 * 119.99742 * 0.02562 * 7 2 1 10 10 O 1.42099 * 106.40257 * 293.53753 * 9 7 2 11 11 O 1.42096 * 106.40041 * 66.46100 * 9 7 2 12 12 N 1.65602 * 107.21304 * 179.97438 * 9 7 2 13 13 C 1.47029 * 125.64568 * 90.03121 * 12 9 7 14 14 C 1.54327 * 107.26775 * 181.01781 * 13 12 9 15 15 C 1.55156 * 102.94352 * 22.19255 * 14 13 12 16 16 H 1.09002 * 111.00565 * 82.57392 * 15 14 13 17 17 C 1.50704 * 111.00236 * 206.42094 * 15 14 13 18 18 C 1.38235 * 119.99480 * 58.27308 * 17 15 14 19 19 C 1.38243 * 119.99714 * 179.76777 * 18 17 15 20 20 C 1.38233 * 119.99546 * 0.48069 * 19 18 17 21 21 C 1.38236 * 120.00478 * 359.79175 * 20 19 18 22 22 C 1.38230 * 120.00063 * 238.54537 * 17 15 14 23 23 C 1.47424 * 125.65230 * 269.71503 * 12 9 7 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.88116 * 300.43206 * 13 12 9 26 26 H 1.08992 * 109.88633 * 61.44517 * 13 12 9 27 27 H 1.09003 * 110.71504 * 140.55045 * 14 13 12 28 28 H 1.09001 * 110.72042 * 263.82443 * 14 13 12 29 29 H 1.07997 * 120.00557 * 359.97438 * 18 17 15 30 30 H 1.07997 * 120.00011 * 180.25474 * 19 18 17 31 31 H 1.08007 * 120.00172 * 179.77134 * 20 19 18 32 32 H 1.07999 * 120.00406 * 179.97438 * 21 20 19 33 33 H 1.07997 * 119.99720 * 0.02562 * 22 17 15 34 34 H 1.09003 * 110.36397 * 274.75152 * 23 12 9 35 35 H 1.09000 * 110.36201 * 37.07242 * 23 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 16 1.1235 -2.7200 0.0005 10 8 0.4510 -2.7950 1.2500 11 8 0.4519 -2.7955 -1.2494 12 7 2.2484 -3.9354 0.0005 13 6 2.8299 -4.5647 1.1953 14 6 3.8440 -5.6214 0.7089 15 6 4.1919 -5.1359 -0.7230 16 1 4.9541 -4.3571 -0.6972 17 6 4.6283 -6.2869 -1.5925 18 6 3.7814 -7.3607 -1.7939 19 6 4.1798 -8.4144 -2.5953 20 6 5.4289 -8.3986 -3.1871 21 6 6.2780 -7.3274 -2.9812 22 6 5.8776 -6.2714 -2.1840 23 6 2.8277 -4.5700 -1.1974 24 1 -0.4850 0.8401 0.0004 25 1 3.3384 -3.8134 1.7996 26 1 2.0453 -5.0427 1.7816 27 1 4.7316 -5.6239 1.3416 28 1 3.3866 -6.6104 0.6804 29 1 2.8072 -7.3751 -1.3279 30 1 3.5165 -9.2514 -2.7560 31 1 5.7416 -9.2235 -3.8103 32 1 7.2540 -7.3153 -3.4433 33 1 6.5410 -5.4347 -2.0227 34 1 2.1824 -5.3748 -1.5499 35 1 2.9770 -3.8303 -1.9838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050600522.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:05 Heat of formation + Delta-G solvation = -69.250802 kcal Electronic energy + Delta-G solvation = -19784.780123 eV Core-core repulsion = 16680.622566 eV Total energy + Delta-G solvation = -3104.157557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.087 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.68965 -37.50228 -35.22093 -33.94762 -33.09483 -32.32804 -30.93390 -29.36989 -27.82500 -26.11175 -23.18857 -22.43404 -21.61893 -19.98960 -18.71447 -17.55936 -16.84783 -16.31616 -15.74430 -15.10143 -14.87893 -14.60497 -14.08640 -13.84002 -13.42827 -13.25780 -12.94763 -12.93485 -12.68490 -12.47927 -11.96659 -11.58618 -11.24022 -11.20471 -11.17053 -11.10216 -10.76353 -10.60116 -10.45385 -10.30775 -10.26083 -10.17173 -9.24238 -8.96080 -8.91006 -8.65554 -8.13461 -6.68807 -5.31039 1.32064 1.37440 2.24700 3.07108 3.13632 3.20150 3.73711 4.06317 4.49990 4.64109 4.76135 4.82134 4.95361 4.99248 5.11090 5.14899 5.32152 5.46664 5.49835 5.65139 5.75753 5.85362 5.93129 5.99035 6.02729 6.09828 6.17887 6.30597 6.36767 6.39825 6.45515 6.47762 6.70000 6.90519 6.97799 7.34132 7.48572 7.99018 8.89687 10.24759 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027634 B = 0.004669 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.993551 B = 5995.029306 C = 6361.269193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.132 3.868 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.263 1.263 7 C -1.020 5.020 8 H 0.102 0.898 9 S 2.727 3.273 10 O -1.001 7.001 11 O -1.001 7.001 12 N -1.022 6.022 13 C 0.123 3.877 14 C -0.119 4.119 15 C -0.067 4.067 16 H 0.093 0.907 17 C -0.063 4.063 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.116 4.116 23 C 0.136 3.864 24 H 0.291 0.709 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.061 0.939 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.999 -12.933 -2.869 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.085 4.085 3 Si 0.745 3.255 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.187 1.187 7 C -1.154 5.154 8 H 0.120 0.880 9 S 2.829 3.171 10 O -0.992 6.992 11 O -0.992 6.992 12 N -0.858 5.858 13 C -0.003 4.003 14 C -0.157 4.157 15 C -0.087 4.087 16 H 0.112 0.888 17 C -0.064 4.064 18 C -0.132 4.132 19 C -0.137 4.137 20 C -0.147 4.147 21 C -0.139 4.139 22 C -0.134 4.134 23 C 0.009 3.991 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.140 0.860 34 H 0.079 0.921 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.791 -12.927 -2.850 17.078 hybrid contribution 1.007 1.240 -0.057 1.598 sum 11.798 -11.687 -2.908 16.859 Atomic orbital electron populations 1.69896 1.06789 1.30741 1.40199 1.24763 0.94470 1.00806 0.88499 0.86159 0.80166 0.80032 0.79168 1.19182 1.19941 1.18672 1.30628 1.06169 1.11829 1.66726 0.87978 1.00153 0.71628 0.72553 0.72746 1.93355 1.72489 1.87519 1.45804 1.93360 1.72518 1.87524 1.45783 1.59207 1.61967 1.53920 1.10666 1.21530 0.95610 0.95011 0.88120 1.22736 0.98995 0.98872 0.95125 1.21485 0.98100 0.95118 0.93959 0.88841 1.19752 0.94104 0.95238 0.97282 1.21106 0.99786 0.93575 0.98734 1.21133 0.96413 0.98556 0.97594 1.21110 0.94571 0.98583 1.00472 1.21109 0.99620 0.94252 0.98912 1.21091 0.95964 0.98695 0.97640 1.21888 0.91636 0.97187 0.88342 0.89872 0.91826 0.91798 0.90454 0.90775 0.85735 0.86215 0.86454 0.86312 0.86016 0.92079 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.16 13.19 55.43 0.73 -24.43 16 2 C 0.13 3.74 5.46 -17.82 -0.10 3.64 16 3 Si 0.92 20.73 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -1.02 -28.48 9.75 30.60 0.30 -28.19 16 8 H 0.10 2.61 7.81 -52.48 -0.41 2.20 16 9 S 2.73 74.05 5.22 -107.50 -0.56 73.49 16 10 O -1.00 -29.73 17.60 -57.17 -1.01 -30.73 16 11 O -1.00 -29.81 17.60 -57.17 -1.01 -30.82 16 12 N -1.02 -21.16 3.70 -111.29 -0.41 -21.57 16 13 C 0.12 2.09 6.99 -3.06 -0.02 2.07 16 14 C -0.12 -1.52 6.36 -24.90 -0.16 -1.68 16 15 C -0.07 -0.91 3.28 -89.50 -0.29 -1.20 16 16 H 0.09 1.21 7.96 -51.93 -0.41 0.80 16 17 C -0.06 -0.78 5.00 -104.62 -0.52 -1.30 16 18 C -0.11 -1.34 8.29 -39.58 -0.33 -1.67 16 19 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 20 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 21 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.12 -1.28 9.69 -39.58 -0.38 -1.66 16 23 C 0.14 2.36 6.39 -2.41 -0.02 2.34 16 24 H 0.29 7.75 8.31 -40.82 -0.34 7.41 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.07 0.87 7.08 -51.93 -0.37 0.50 16 29 H 0.12 1.42 7.00 -52.49 -0.37 1.05 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 1.17 7.99 -52.49 -0.42 0.75 16 34 H 0.06 1.01 6.75 -51.93 -0.35 0.66 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 309.14 15.07 4.66 4.66 Total: -1.00 -35.17 309.14 -9.75 -44.93 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -4.42 Total: 1.32 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: -2.71 Total: -32.55 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.32 Total: -46.01 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -2.01 Total: -61.55 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 74.05 SS G_CDS: -0.56 Total: 73.49 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.17 -9.75 -44.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050600522.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.323 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds